writing sdrf to CHOL.merger.sdrf.txt

------------------------------------------------------------------
2016-02-12 16:36:27.736845
. ['/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutationPackagerCoverage/CHOL/22213553/infile3.input.tsv']

Make a softlink......

Flag: True.
Processing input file to make a softlink...: /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutationPackagerCoverage/CHOL/22213553/infile3.input.tsv

md5sum /xchip/gdac_data/normalized/diced/chol/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_CHOL.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-3X-AAV9-01.wig.txt
('', None)
0
89be1b3dbbea7f08135eb207b61ea26b
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/chol/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_CHOL.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-3X-AAVA-01.wig.txt
('', None)
0
f87f8d05f0be0c12dbc37a68a2405cbe
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/chol/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_CHOL.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-3X-AAVB-01.wig.txt
('', None)
0
cc5b697beca8bf4828c06640f04a076b
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/chol/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_CHOL.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-3X-AAVC-01.wig.txt
('', None)
0
dd201f092eb1f389f164b3403476aea5
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/chol/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_CHOL.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-3X-AAVE-01.wig.txt
('', None)
0
33ae26d3b23223e87150159f407db1c3
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/chol/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_CHOL.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-4G-AAZO-01.wig.txt
('', None)
0
9ec9acb887808da938725af80ddadb40
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/chol/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_CHOL.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-4G-AAZT-01.wig.txt
('', None)
0
35af14f715cf0d8e615523496c570c3d
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/chol/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_CHOL.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-W5-AA2G-01.wig.txt
('', None)
0
e5677bfc7c4d818e78e919e8e7e28a01
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/chol/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_CHOL.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-W5-AA2H-01.wig.txt
('', None)
0
a96368f585232fd2bfad6d23e5dbbfbd
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/chol/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_CHOL.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-W5-AA2I-01.wig.txt
('', None)
0
21b6a9ae62c3f9f753e014f360a4efa5
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/chol/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_CHOL.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-W5-AA2O-01.wig.txt
('', None)
0
d8162aa91434c1231b67c1e821d3488b
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/chol/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_CHOL.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-W5-AA2Q-01.wig.txt
('', None)
0
07c31f4993e04416de87d12d4fa7a9c3
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/chol/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_CHOL.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-W5-AA2R-01.wig.txt
('', None)
0
fc51f5d288eff40f5b6b9db412dd23c3
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/chol/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_CHOL.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-W5-AA2T-01.wig.txt
('', None)
0
453feb4acb13da41c0eeac7db9b23736
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/chol/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_CHOL.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-W5-AA2U-01.wig.txt
('', None)
0
2e560e93cee1bd293edfe09435fe772a
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/chol/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_CHOL.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-W5-AA2W-01.wig.txt
('', None)
0
44158ed49f170ad34d2f5b3ca6c4aadb
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/chol/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_CHOL.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-W5-AA2X-01.wig.txt
('', None)
0
aa274a7591760010d8ca261dacc3e3ca
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/chol/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_CHOL.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-W5-AA2Z-01.wig.txt
('', None)
0
4b252e0ff2e9e659d84582868ef1ddc3
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/chol/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_CHOL.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-W5-AA30-01.wig.txt
('', None)
0
5b67c59ae54806c5a1e08f2ed5fe99d8
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/chol/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_CHOL.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-W5-AA31-01.wig.txt
('', None)
0
338548f72226ed61a6bbc1ad02b25271
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/chol/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_CHOL.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-W5-AA33-01.wig.txt
('', None)
0
46c33f3988431c48137723de997bec89
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/chol/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_CHOL.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-W5-AA34-01.wig.txt
('', None)
0
2971249178c9d1702a4edacf327dbc15
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/chol/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_CHOL.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-W5-AA38-01.wig.txt
('', None)
0
4b464d877d1d6677fd4235fdc0c6e8d4
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/chol/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_CHOL.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-W5-AA39-01.wig.txt
('', None)
0
9f5fc5ea6405d11e358d6520087a2c25
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/chol/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_CHOL.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-W6-AA0S-01.wig.txt
('', None)
0
0cc98c2c40c5249456cde917fc7bf514
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/chol/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_CHOL.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-WD-A7RX-01.wig.txt
('', None)
0
1597ec95d12d36bef24862059f567818
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/chol/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_CHOL.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-YR-A95A-01.wig.txt
('', None)
0
ec7f5c4659d5aaccb6b0a06978344fc7
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/chol/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_CHOL.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ZD-A8I3-01.wig.txt
('', None)
0
5b766cc920a97affd1cb163b4095c52c
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/chol/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_CHOL.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ZH-A8Y1-01.wig.txt
('', None)
0
e9421f3a456adf40947313d701844b1c
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/chol/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_CHOL.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ZH-A8Y2-01.wig.txt
('', None)
0
e6a157d91f75f344b6d51d0cc8f8b6a8
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/chol/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_CHOL.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ZH-A8Y4-01.wig.txt
('', None)
0
d957e603736d89046733379cace6f40c
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/chol/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_CHOL.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ZH-A8Y5-01.wig.txt
('', None)
0
4b8bd3e34f160e66946d429a8b540848
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/chol/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_CHOL.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ZH-A8Y6-01.wig.txt
('', None)
0
d58d27475aba1de392e25a8406a2e933
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/chol/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_CHOL.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ZH-A8Y8-01.wig.txt
('', None)
0
944636447992d136e470c0056f92bbfa
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/chol/tracerel__illuminaga_dnaseq__bcm_edu__Level_2__Coverage_Calculation__wig/bcm.edu_CHOL.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ZU-A8S4-01.wig.txt
('', None)
0
4f9e971b0a9d2be5b0050749965ce3c2
It is not in the dictionary
Make a softlink is done.