Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
C10orf118	55088	broad.mit.edu	36	10	115881821	115881821	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018017	exon11	c.C1768T	p.L590L	.	.	.
MTG1	92170	broad.mit.edu	36	10	135062704	135062704	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_138384	exon5	c.G404A	p.R135H	.	.	.
ARMC4	55130	broad.mit.edu	36	10	28324052	28324052	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018076	exon2	c.C26T	p.T9M	.	.	.
C10orf71	118461	broad.mit.edu	36	10	50202663	50202663	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001135196	exon3	c.G2067A	p.Q689Q	.	.	.
PCDH15	65217	broad.mit.edu	36	10	55296446	55296446	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001142767	exon26	c.G3568A	p.D1190N	.	.	.
GRID1	2894	broad.mit.edu	36	10	87474306	87474306	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017551	exon11	c.G1641T	p.K547N	.	.	.
GRIK4	2900	broad.mit.edu	36	11	120281214	120281214	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014619	exon11	c.C1278T	p.N426N	.	.	.
OR4A15	81328	broad.mit.edu	36	11	54892170	54892170	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001005275	exon1	c.G235A	p.A79T	.	.	.
OR4A15	81328	broad.mit.edu	36	11	54892945	54892945	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001005275	exon1	c.C1010G	p.A337G	.	.	.
C11orf16	56673	broad.mit.edu	36	11	8905104	8905104	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020643	exon4	c.G518A	p.G173D	.	.	.
EID3	493861	broad.mit.edu	36	12	103222594	103222594	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001008394	exon1	c.C752A	p.S251Y	.	.	.
NCOR2	9612	broad.mit.edu	36	12	123387649	123387649	+	Silent	SNP	C	T	T	rs2229842	byFrequency;by1000genomes	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006312	exon40	c.G5739A	p.P1913P	.	.	.
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35A	p.G12D	 KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.
MLL2	8085	broad.mit.edu	36	12	47733673	47733673	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003482	exon6	c.T692G	p.V231G	.	.	.
KRT1	3848	broad.mit.edu	36	12	51358622	51358622	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006121	exon2	c.G777A	p.M259I	.	.	.
CDK4	1019	broad.mit.edu	36	12	56429252	56429252	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000075	exon7	c.T799C	p.S267P	.	.	.
CRYL1	51084	broad.mit.edu	36	13	19885513	19885513	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015974	exon6	c.C647T	p.S216F	.	.	.
FRY	10129	broad.mit.edu	36	13	31574113	31574113	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_023037	exon3	c.C284T	p.T95I	.	.	.
MYH6	4624	broad.mit.edu	36	14	22927999	22927999	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002471	exon29	c.G4084A	p.V1362I	.	.	.
SYT16	83851	broad.mit.edu	36	14	61637048	61637048	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_031914	exon6	c.G1808A	p.R603H	.	.	.
PGF	5228	broad.mit.edu	36	14	74484975	74484975	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002632	exon4	c.G380A	p.R127H	.	.	.
OCA2	4948	broad.mit.edu	36	15	25933664	25933664	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000275	exon9	c.G897A	p.T299T	.	.	.
DUOX2	50506	broad.mit.edu	36	15	43174975	43174975	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014080	exon31	c.A4191C	p.K1397N	.	.	.
MYO1E	4643	broad.mit.edu	36	15	57288306	57288306	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004998	exon14	c.G1396T	p.V466L	.	.	.
BNC1	646	broad.mit.edu	36	15	81723872	81723872	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001717	exon4	c.G1135A	p.V379I	.	.	.
CHSY1	22856	broad.mit.edu	36	15	99536115	99536115	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014918	exon3	c.C1410T	p.H470H	.	.	.
NGRN	51335	broad.mit.edu	36	15	88615651	88615660	+	Frame_Shift_Del	DEL	CTGTATCAGG	-	-	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	CTGTATCAGG	CTGTATCAGG	CTGTATCAGG	-	CTGTATCAGG	CTGTATCAGG	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001033088	exon3	c.503_512del	p.168_171del	.	.	.
CACNG3	10368	broad.mit.edu	36	16	24273772	24273772	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006539	exon3	c.C413T	p.A138V	.	.	.
ZNF668	79759	broad.mit.edu	36	16	30980835	30980835	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001172669	exon4	c.G984A	p.V328V	.	.	.
SLX4	84464	broad.mit.edu	36	16	3587606	3587606	+	Silent	SNP	A	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032444	exon7	c.T1458A	p.R486R	.	.	.
ADCY9	115	broad.mit.edu	36	16	4103981	4103981	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001116	exon2	c.C1464T	p.V488V	.	.	.
WDR90	197335	broad.mit.edu	36	16	643388	643388	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145294	exon11	c.C1169A	p.A390E	.	.	.
B3GNT9	84752	broad.mit.edu	36	16	65741154	65741154	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033309	exon2	c.C736T	p.R246W	.	.	.
PKD1L2	114780	broad.mit.edu	36	16	79754803	79754803	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_052892	exon21	c.G3380A	p.R1127Q	.	.	.
PRPF8	10594	broad.mit.edu	36	17	1506772	1506772	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006445	exon35	c.G5539A	p.A1847T	.	.	.
OR3A1	4994	broad.mit.edu	36	17	3142152	3142152	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002550	exon1	c.G475A	p.A159T	.	.	.
XYLT2	64132	broad.mit.edu	36	17	45787334	45787334	+	Silent	SNP	C	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022167	exon4	c.C925A	p.R309R	.	.	.
SDK2	54549	broad.mit.edu	36	17	68909797	68909797	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001144952	exon19	c.G2563A	p.V855M	.	.	.
CDH2	1000	broad.mit.edu	36	18	23797410	23797410	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001792	exon15	c.G2423A	p.R808Q	.	.	.
DSG2	1829	broad.mit.edu	36	18	27375186	27375186	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001943	exon13	c.G1912A	p.G638R	.	.	.
ATP13A1	57130	broad.mit.edu	36	19	19625641	19625641	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020410	exon15	c.C2052T	p.R684R	.	.	.
PAPL	390928	broad.mit.edu	36	19	44281099	44281099	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004318	exon3	c.C283T	p.R95X	.	.	.
BCKDHA	593	broad.mit.edu	36	19	46608512	46608512	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001164783	exon2	c.G239A	p.R80H	.	.	.
TPRX1	284355	broad.mit.edu	36	19	52997199	52997199	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198479	exon2	c.G881A	p.R294Q	.	.	.
MUC16	94025	broad.mit.edu	36	19	8923338	8923338	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024690	exon3	c.C25108A	p.L8370I	.	.	.
FLG	2312	broad.mit.edu	36	1	150547754	150547754	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002016	exon3	c.G6232A	p.G2078S	.	.	.
TMEM79	84283	broad.mit.edu	36	1	154522807	154522807	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032323	exon3	c.A890G	p.N297S	.	.	.
AGMAT	79814	broad.mit.edu	36	1	15772736	15772736	+	Silent	SNP	G	C	C	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024758	exon7	c.C1056G	p.V352V	.	.	.
RASSF5	83593	broad.mit.edu	36	1	204778189	204778189	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182663	exon2	c.G523C	p.G175R	.	.	.
GNL2	29889	broad.mit.edu	36	1	37825576	37825576	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013285	exon5	c.C492T	p.I164I	.	.	.
RRAGC	64121	broad.mit.edu	36	1	39089906	39089906	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022157	exon5	c.C867T	p.I289I	.	.	.
ABCA4	24	broad.mit.edu	36	1	94278209	94278209	+	Silent	SNP	T	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000350	exon24	c.A3585T	p.L1195L	.	.	.
SPTLC3	55304	broad.mit.edu	36	20	13003067	13003067	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018327	exon4	c.T529C	p.Y177H	.	.	.
GGT7	2686	broad.mit.edu	36	20	32908279	32908279	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178026	exon8	c.G1093A	p.V365M	.	.	.
ACSS2	55902	broad.mit.edu	36	20	32978566	32978566	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018677	exon18	c.G1994T	p.R665L	.	.	.
SAMHD1	25939	broad.mit.edu	36	20	34996921	34996921	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015474	exon4	c.G434A	p.R145Q	.	.	.
PRDM15	63977	broad.mit.edu	36	21	42140352	42140352	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_022115	exon13	c.A1654G	p.N552D	.	.	.
KRTAP10-7	386675	broad.mit.edu	36	21	44845658	44845658	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198689	exon2	c.G694A	p.V232I	.	.	.
HPS4	89781	broad.mit.edu	36	22	25183923	25183923	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152841	exon11	c.G1842A	p.P614P	.	.	.
MCHR1	2847	broad.mit.edu	36	22	39407182	39407182	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005297	exon2	c.G573A	p.M191I	.	.	.
TTN	7273	broad.mit.edu	36	2	179148241	179148241	+	Missense_Mutation	SNP	C	T	T	rs72646892	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003319	exon154	c.G43668A	p.P14556P	.	.	.
FN1	2335	broad.mit.edu	36	2	215964728	215964728	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_212476	exon25	c.G3851A	p.R1284H	.	.	.
ZNF142	7701	broad.mit.edu	36	2	219215682	219215682	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001105537	exon8	c.C3801A	p.Y1267X	.	.	.
TRIP12	9320	broad.mit.edu	36	2	230364871	230364871	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004238	exon28	c.A4145G	p.N1382S	.	.	.
C2orf84	653140	broad.mit.edu	36	2	24266842	24266842	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001040710	exon6	c.C459T	p.A153A	.	.	.
KCNK3	3777	broad.mit.edu	36	2	26804515	26804515	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002246	exon2	c.G760A	p.E254K	.	.	.
LHCGR	3973	broad.mit.edu	36	2	48768828	48768828	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000233	exon11	c.G1612T	p.A538S	.	.	.
CCDC142	84865	broad.mit.edu	36	2	74562960	74562960	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032779	exon1	c.C513G	p.I171M	.	.	.
FILIP1L	11259	broad.mit.edu	36	3	101050387	101050387	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182909	exon5	c.G2823A	p.T941T	.	.	.
GSK3B	2932	broad.mit.edu	36	3	121065136	121065136	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002093	exon10	c.C955T	p.R319X	.	.	.
PLXND1	23129	broad.mit.edu	36	3	130758194	130758194	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015103	exon35	c.G5617A	p.A1873T	.	.	.
COL6A6	131873	broad.mit.edu	36	3	131768502	131768503	+	Missense_Mutation	DNP	GC	TT	TT	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	GC	GC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001102608	exon4	c.1549_1550TT	.	.	.	.
TRPC1	7220	broad.mit.edu	36	3	143986538	143986538	+	Silent	SNP	A	G	G	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003304	exon6	c.A1161G	p.E387E	.	.	.
PIK3CA	5290	broad.mit.edu	36	3	180434779	180434779	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006218	exon21	c.A3140G	p.H1047R	 PIK3CA,breast,NS,Substitution - Missense,0 	.	.
FXR1	8087	broad.mit.edu	36	3	182163378	182163378	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001013438	exon12	c.T1091C	p.L364P	.	.	.
ZNF385D	79750	broad.mit.edu	36	3	21437769	21437769	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024697	exon8	c.C1129T	p.R377W	.	.	.
TGFBR2	7048	broad.mit.edu	36	3	30690668	30690668	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003242	exon5	c.C1322T	p.S441F	.	.	.
CCR3	1232	broad.mit.edu	36	3	46282558	46282558	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_178328	exon3	c.C968A	p.A323D	.	.	.
IMPDH2	3615	broad.mit.edu	36	3	49040258	49040258	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000884	exon5	c.C420T	p.C140C	.	.	.
KIAA1109	84162	broad.mit.edu	36	4	123411769	123411769	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015312	exon45	c.G7640A	p.R2547Q	.	.	.
SLC7A11	23657	broad.mit.edu	36	4	139325786	139325786	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014331	exon7	c.A854T	p.N285I	.	.	.
EDNRA	1909	broad.mit.edu	36	4	148673262	148673262	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001957	exon4	c.C703G	p.Q235E	.	.	.
FNIP2	57600	broad.mit.edu	36	4	160009220	160009220	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020840	exon13	c.G1982A	p.G661D	.	.	.
LIMCH1	22998	broad.mit.edu	36	4	41316058	41316058	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001112720	exon3	c.C317T	p.P106L	.	.	.
FAM190A	401145	broad.mit.edu	36	4	91448634	91448634	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001145065	exon2	c.G176A	p.R59Q	.	.	.
APC	324	broad.mit.edu	36	5	112201603	112201603	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.C2359T	p.R787X	 APC,large_intestine,right,Substitution - Nonsense,0 	.	.
CTNND2	1501	broad.mit.edu	36	5	11417829	11417829	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001332	exon8	c.G1351A	p.G451S	.	.	.
JAKMIP2	9832	broad.mit.edu	36	5	147003852	147003852	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014790	exon7	c.G1186T	p.V396F	.	.	.
LSM11	134353	broad.mit.edu	36	5	157111017	157111017	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173491	exon2	c.C490T	p.R164C	.	.	.
MRPS36	92259	broad.mit.edu	36	5	68560792	68560792	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033281	exon4	c.G296A	p.R99H	.	.	.
GRIK2	2898	broad.mit.edu	36	6	102240920	102240920	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_021956	exon6	c.C950T	p.T317M	.	.	.
PKIB	5570	broad.mit.edu	36	6	123080715	123080715	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032471	exon3	c.G77A	p.R26H	.	.	.
PCMT1	5110	broad.mit.edu	36	6	150112752	150112752	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005389	exon1	c.G196C	p.A66P	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152749907	152749907	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033071	exon54	c.T8501G	p.V2834G	.	.	.
AGPAT4	56895	broad.mit.edu	36	6	161494418	161494418	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020133	exon5	c.T614C	p.L205S	.	.	.
T	6862	broad.mit.edu	36	6	166500951	166500951	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003181	exon2	c.G119A	p.R40H	.	.	.
THBS2	7058	broad.mit.edu	36	6	169382484	169382484	+	Silent	SNP	C	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003247	exon7	c.G1020T	p.T340T	.	.	.
CUL9	23113	broad.mit.edu	36	6	43298300	43298300	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015089	exon37	c.G6975A	p.P2325P	.	.	.
DST	667	broad.mit.edu	36	6	56500337	56500337	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015548	exon49	c.G9966A	p.W3322X	.	.	.
OR2A14	135941	broad.mit.edu	36	7	143458033	143458033	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001659	exon1	c.G895A	p.A299T	.	.	.
HDAC9	9734	broad.mit.edu	36	7	18841688	18841688	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_178423	exon20	c.G2531A	p.R844H	.	.	.
INHBA	3624	broad.mit.edu	36	7	41696411	41696411	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002192	exon3	c.A643G	p.K215E	.	.	.
FOXK1	221937	broad.mit.edu	36	7	4768466	4768466	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001037165	exon9	c.A2047C	p.T683P	.	.	.
CHCHD2	51142	broad.mit.edu	36	7	56137046	56137046	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016139	exon4	c.T448G	p.L150V	.	.	.
GTF2IRD1	9569	broad.mit.edu	36	7	73582156	73582156	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005685	exon9	c.G1247A	p.R416H	.	.	.
PCLO	27445	broad.mit.edu	36	7	82622458	82622458	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033026	exon2	c.C1435T	p.P479S	.	.	.
ASNS	440	broad.mit.edu	36	7	97326502	97326502	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_183356	exon6	c.C632T	p.P211L	.	.	.
STAG3	10734	broad.mit.edu	36	7	99618348	99618348	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012447	exon4	c.C286A	p.P96T	.	.	.
ZNF517	340385	broad.mit.edu	36	8	146003488	146003489	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_213605	exon5	c.383_384insG	p.V128fs	.	.	.
TMEM74	157753	broad.mit.edu	36	8	109866130	109866130	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_153015	exon2	c.G374A	p.R125Q	.	.	.
USP17L2	377630	broad.mit.edu	36	8	12032273	12032273	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_201402	exon1	c.C1406A	p.S469X	.	.	.
ZNF34	80778	broad.mit.edu	36	8	145970195	145970195	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_030580	exon6	c.A943G	p.T315A	.	.	.
CSMD1	64478	broad.mit.edu	36	8	2800629	2800629	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033225	exon64	c.G9884A	p.R3295Q	.	.	.
CSMD1	64478	broad.mit.edu	36	8	3843012	3843012	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033225	exon5	c.C639T	p.R213R	.	.	.
C8orf86	389649	broad.mit.edu	36	8	38489237	38489237	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_207412	exon3	c.G497A	p.S166N	.	.	.
CYP7A1	1581	broad.mit.edu	36	8	59573457	59573457	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000780	exon2	c.G206A	p.C69Y	.	.	.
TNKS	8658	broad.mit.edu	36	8	9625883	9625883	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003747	exon14	c.C2075T	p.A692V	.	.	.
MPDZ	8777	broad.mit.edu	36	9	13140632	13140632	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003829	exon24	c.C3508T	p.R1170X	.	.	.
MPDZ	8777	broad.mit.edu	36	9	13211378	13211378	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003829	exon6	c.C869A	p.A290D	.	.	.
ECM2	1842	broad.mit.edu	36	9	94302864	94302864	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001393	exon9	c.C1897A	p.L633I	.	.	.
C9orf102	375748	broad.mit.edu	36	9	97723359	97723359	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001010895	exon7	c.C1273T	p.Q425X	.	.	.
ARL13A	392509	broad.mit.edu	36	X	100129183	100129183	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001012990	exon6	c.A635G	p.E212G	.	.	.
AFF2	2334	broad.mit.edu	36	X	147551217	147551217	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002025	exon3	c.C277T	p.H93Y	.	.	.
FAM123B	139285	broad.mit.edu	36	X	63328043	63328043	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152424	exon2	c.G1849T	p.E617X	.	.	.