Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
ZNF804B	219578	hgsc.bcm.edu	36	7	88801689	88801689	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3517-01A-01W-0831-10	TCGA-AA-3517-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_181646	exon4	c.G1457A	p.R486Q	.	.	.
SAMD9L	219285	hgsc.bcm.edu	36	7	92599690	92599690	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3517-01A-01W-0831-10	TCGA-AA-3517-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152703	exon5	c.C3531T	p.T1177T	.	.	.
SLC8A3	6547	hgsc.bcm.edu	36	14	69703888	69703888	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3517-01A-01W-0831-10	TCGA-AA-3517-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033262	exon2	c.G1005A	p.L335L	.	.	.
CNN1	1264	hgsc.bcm.edu	36	19	11521430	11521430	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3517-01A-01W-0831-10	TCGA-AA-3517-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001299	exon7	c.C714T	p.C238C	.	.	.
C5AR1	728	hgsc.bcm.edu	36	19	52515556	52515556	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3517-01A-01W-0831-10	TCGA-AA-3517-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001736	exon2	c.C681T	p.S227S	.	.	.
VRK3	51231	hgsc.bcm.edu	36	19	55202789	55202789	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3517-01A-01W-0831-10	TCGA-AA-3517-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001025778	exon4	c.G246T	p.K82N	.	.	.
EXT1	2131	hgsc.bcm.edu	36	8	118899916	118899916	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3517-01A-01W-0831-10	TCGA-AA-3517-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000127	exon7	c.C1571A	p.P524Q	.	.	.
TEX15	56154	hgsc.bcm.edu	36	8	30824927	30824927	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3517-01A-01W-0831-10	TCGA-AA-3517-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031271	exon1	c.G1149A	p.P383P	.	.	.
SLC26A7	115111	hgsc.bcm.edu	36	8	92448025	92448025	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3517-01A-01W-0831-10	TCGA-AA-3517-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_134266	exon14	c.G1530A	p.P510P	.	.	.
BCAN	63827	hgsc.bcm.edu	36	1	154888739	154888739	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3517-01A-01W-0831-10	TCGA-AA-3517-10A-01W-0831-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_021948	exon8	c.A1373T	p.K458I	.	.	.
ARHGEF11	9826	hgsc.bcm.edu	36	1	155195261	155195261	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3517-01A-01W-0831-10	TCGA-AA-3517-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_198236	exon17	c.C1399A	p.L467M	.	.	.
RNASEL	6041	hgsc.bcm.edu	36	1	180822024	180822024	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3517-01A-01W-0831-10	TCGA-AA-3517-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_021133	exon2	c.G541A	p.V181I	.	.	.
GPATCH2	55105	hgsc.bcm.edu	36	1	215671237	215671237	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3517-01A-01W-0831-10	TCGA-AA-3517-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018040	exon10	c.G1460A	p.G487E	.	.	.
STIL	6491	hgsc.bcm.edu	36	1	47519072	47519072	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3517-01A-01W-0831-10	TCGA-AA-3517-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001048166	exon12	c.G1645A	p.E549K	.	.	.
OR6T1	219874	hgsc.bcm.edu	36	11	123318974	123318974	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3517-01A-01W-0831-10	TCGA-AA-3517-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001005187	exon1	c.G782A	p.R261H	.	.	.
JARID2	3720	hgsc.bcm.edu	36	6	15605221	15605221	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3517-01A-01W-0831-10	TCGA-AA-3517-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004973	exon7	c.C1786T	p.R596W	.	.	.
EFTUD2	9343	hgsc.bcm.edu	36	17	40293432	40293432	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3517-01A-01W-0831-10	TCGA-AA-3517-10A-01W-0831-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004247	exon17	c.A1613T	p.H538L	.	.	.
SLC16A5	9121	hgsc.bcm.edu	36	17	70605865	70605865	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3517-01A-01W-0831-10	TCGA-AA-3517-10A-01W-0831-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004695	exon4	c.A337T	p.I113F	.	.	.
TP53	7157	hgsc.bcm.edu	36	17	7517578	7517578	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3517-01A-01W-0831-10	TCGA-AA-3517-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon9	c.G993C	p.Q331H	TP53,lung,NS,Substitution - Nonsense,-2	.	.
IGSF5	150084	hgsc.bcm.edu	36	21	40065001	40065001	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3517-01A-01W-0831-10	TCGA-AA-3517-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001080444	exon4	c.G707A	p.R236Q	.	.	.
BCHE	590	hgsc.bcm.edu	36	3	167030275	167030275	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3517-01A-01W-0831-10	TCGA-AA-3517-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000055	exon2	c.G1241A	p.R414H	.	.	.
RBMS3	27303	hgsc.bcm.edu	36	3	29885404	29885404	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3517-01A-01W-0831-10	TCGA-AA-3517-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001003793	exon7	c.G689A	p.R230Q	.	.	.
VILL	50853	hgsc.bcm.edu	36	3	38018305	38018305	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3517-01A-01W-0831-10	TCGA-AA-3517-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015873	exon12	c.G1429A	p.E477K	.	.	.
SCN11A	11280	hgsc.bcm.edu	36	3	38937582	38937582	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3517-01A-01W-0831-10	TCGA-AA-3517-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014139	exon6	c.C881T	p.P294L	.	.	.
ATXN2	6311	hgsc.bcm.edu	36	12	110432601	110432601	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3517-01A-01W-0831-10	TCGA-AA-3517-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002973	exon12	c.C2207T	p.S736L	.	.	.
CCDC60	160777	hgsc.bcm.edu	36	12	118427297	118427297	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3517-01A-01W-0831-10	TCGA-AA-3517-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_178499	exon7	c.G689A	p.R230H	.	.	.
DIP2B	57609	hgsc.bcm.edu	36	12	49398782	49398782	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3517-01A-01W-0831-10	TCGA-AA-3517-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_173602	exon24	c.G2875T	p.V959F	.	.	.
ISLR2	57611	hgsc.bcm.edu	36	15	72212304	72212304	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3517-01A-01W-0831-10	TCGA-AA-3517-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020851	exon3	c.C156T	p.N52N	.	.	.
SH3RF1	57630	hgsc.bcm.edu	36	4	170254305	170254305	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3517-01A-01W-0831-10	TCGA-AA-3517-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020870	exon12	c.C2607A	p.G869G	.	.	.
EPHA5	2044	hgsc.bcm.edu	36	4	66038820	66038820	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3517-01A-01W-0831-10	TCGA-AA-3517-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004439	exon5	c.C1272T	p.T424T	.	.	.
AMTN	401138	hgsc.bcm.edu	36	4	71431499	71431499	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3517-01A-01W-0831-10	TCGA-AA-3517-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_212557	exon8	c.G512A	p.R171H	.	.	.
UTP14A	10813	hgsc.bcm.edu	36	X	128872705	128872705	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3517-01A-01W-0831-10	TCGA-AA-3517-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006649	exon5	c.T279C	p.P93P	.	.	.
PDE11A	50940	hgsc.bcm.edu	36	2	178587433	178587433	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3517-01A-01W-0831-10	TCGA-AA-3517-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001077197	exon3	c.G163T	p.D55Y	.	.	.
CASP10	843	hgsc.bcm.edu	36	2	201782232	201782232	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3517-01A-01W-0831-10	TCGA-AA-3517-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_032974	exon9	c.C1117G	p.P373A	.	.	.
ADAM23	8745	hgsc.bcm.edu	36	2	207130409	207130409	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3517-01A-01W-0831-10	TCGA-AA-3517-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003812	exon10	c.G947A	p.R316H	.	.	.
PCDH20	64881	hgsc.bcm.edu	36	13	60885744	60885744	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3517-01A-01W-0831-10	TCGA-AA-3517-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_022843	exon2	c.C489T	p.S163S	.	.	.
ABLIM1	3983	hgsc.bcm.edu	36	10	116325217	116325217	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3517-01A-01W-0831-10	TCGA-AA-3517-10A-01W-0831-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002313	exon3	c.A511T	p.T171S	.	.	.
SLIT3	6586	hgsc.bcm.edu	36	5	168113480	168113480	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3517-01A-01W-0831-10	TCGA-AA-3517-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003062	exon17	c.G1796A	p.R599H	.	.	.