Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
OSBPL3	26031	hgsc.bcm.edu	36	7	24858727	24858728	+	Frame_Shift_Ins	INS	-	-	TC	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145320	exon10	c.986_987insGA	p.K329fs	.	.	.
ZNF616	90317	hgsc.bcm.edu	36	19	57309999	57310000	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178523	exon4	c.2230_2231insA	p.P744fs	.	.	.
ZNF558	148156	hgsc.bcm.edu	36	19	8793732	8793733	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144693	exon2	c.67_68insA	p.G23fs	.	.	.
NEK7	140609	hgsc.bcm.edu	36	1	196488920	196488921	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133494	exon3	c.185_186insA	p.L62fs	.	.	.
GBP3	2635	hgsc.bcm.edu	36	1	89251627	89251628	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018284	exon6	c.697_698insA	p.C233fs	.	.	.
SCAND3	114821	hgsc.bcm.edu	36	6	28650686	28650687	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052923	exon3	c.1775_1776insA	p.S592fs	.	.	.
F13A1	2162	hgsc.bcm.edu	36	6	6142469	6142470	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000129	exon9	c.1202_1203insC	p.Q401fs	.	.	.
CTSD	1509	hgsc.bcm.edu	36	11	1737405	1737406	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001909	exon3	c.269_270insC	p.Q90fs	.	.	.
FGD6	55785	hgsc.bcm.edu	36	12	94055445	94055446	+	In_Frame_Ins	INS	-	-	CAG	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018351	exon7	c.2978_2979insCTG	p.V993delinsAV	.	.	.
ZFP106	64397	hgsc.bcm.edu	36	15	40531284	40531285	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022473	exon2	c.409_410insA	p.D137fs	.	.	.
FAM47C	442444	hgsc.bcm.edu	36	X	36936670	36936671	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001013736	exon1	c.266_267insC	p.D89fs	.	.	.
TIGD4	201798	hgsc.bcm.edu	36	4	153910739	153910740	+	Frame_Shift_Ins	INS	-	-	TT	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145720	exon2	c.868_869insAA	p.F290fs	.	.	.
DYSF	8291	hgsc.bcm.edu	36	2	71583922	71583923	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001130981	exon4	c.307_308insC	p.A103fs	.	.	.
C2orf3	6936	hgsc.bcm.edu	36	2	75746663	75746664	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003203	exon16	c.2128_2129insA	p.W710fs	.	.	.
SECISBP2	79048	hgsc.bcm.edu	36	9	91133437	91133438	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024077	exon5	c.617_618insA	p.A206fs	.	.	.
SYCE1	93426	hgsc.bcm.edu	36	10	135221664	135221665	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001143764	exon5	c.316_317insA	p.Q106fs	.	.	.
PCDHB11	56125	hgsc.bcm.edu	36	5	140560334	140560335	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018931	exon1	c.803_804insT	p.D268fs	.	.	.
LARP1	23367	hgsc.bcm.edu	36	5	154153582	154153583	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015315	exon6	c.667_668insC	p.A223fs	.	.	.
ZNF800	168850	hgsc.bcm.edu	36	7	126801037	126801037	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_176814	exon5	c.G1589A	p.R530Q	.	.	.
KLF14	136259	hgsc.bcm.edu	36	7	130068574	130068574	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138693	exon1	c.G827A	p.R276H	.	.	.
DGKI	9162	hgsc.bcm.edu	36	7	136801245	136801245	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004717	exon27	c.C2585T	p.P862L	.	.	.
TBXAS1	6916	hgsc.bcm.edu	36	7	139282460	139282460	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001061	exon5	c.C338T	p.A113V	.	.	.
CLCN1	1180	hgsc.bcm.edu	36	7	142739636	142739636	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000083	exon11	c.G1169A	p.R390H	.	.	.
OR2F1	26211	hgsc.bcm.edu	36	7	143288479	143288479	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012369	exon1	c.T483C	p.A161A	.	.	.
NOS3	4846	hgsc.bcm.edu	36	7	150340408	150340408	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000603	exon24	c.G3021A	p.L1007L	.	.	.
HOXA2	3199	hgsc.bcm.edu	36	7	27106960	27106960	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006735	exon2	c.C1041A	p.S347S	.	.	.
HOXA4	3201	hgsc.bcm.edu	36	7	27135488	27135488	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002141	exon2	c.C844T	p.R282X	.	.	.
GNA12	2768	hgsc.bcm.edu	36	7	2801211	2801211	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007353	exon2	c.C402T	p.F134F	.	.	.
AQP1	358	hgsc.bcm.edu	36	7	30929684	30929684	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001185060	exon5	c.T476C	p.V159A	.	.	.
SDK1	221935	hgsc.bcm.edu	36	7	4155545	4155545	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152744	exon30	c.C4549T	p.R1517X	.	.	.
FIGNL1	63979	hgsc.bcm.edu	36	7	50482055	50482055	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001042762	exon4	c.A425C	p.E142A	.	.	.
COBL	23242	hgsc.bcm.edu	36	7	51061742	51061742	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015198	exon11	c.A3499T	p.R1167W	.	.	.
COBL	23242	hgsc.bcm.edu	36	7	51064453	51064453	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015198	exon10	c.C1834T	p.R612C	.	.	.
EGFR	1956	hgsc.bcm.edu	36	7	55226960	55226960	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005228	exon21	c.A2524C	p.N842H	EGFR,stomach,NS,Substitution - Missense,0	.	.
ZNF713	349075	hgsc.bcm.edu	36	7	55974804	55974804	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182633	exon4	c.A904G	p.I302V	.	.	.
EIF2AK1	27102	hgsc.bcm.edu	36	7	6034819	6034819	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001134335	exon13	c.C1480A	p.L494M	.	.	.
LIMK1	3984	hgsc.bcm.edu	36	7	73160190	73160190	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002314	exon9	c.C1119T	p.F373F	.	.	.
CACNA2D1	781	hgsc.bcm.edu	36	7	81434848	81434848	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000722	exon30	c.G2463A	p.P821P	.	.	.
C7orf62	219557	hgsc.bcm.edu	36	7	88261861	88261861	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152706	exon2	c.T332C	p.L111P	.	.	.
PTCD1	26024	hgsc.bcm.edu	36	7	98855673	98855673	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015545	exon8	c.C1956T	p.D652D	.	.	.
TAF6	6878	hgsc.bcm.edu	36	7	99547287	99547287	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005641	exon9	c.C900T	p.Y300Y	.	.	.
AGFG2	3268	hgsc.bcm.edu	36	7	99991220	99991220	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006076	exon6	c.G803A	p.G268D	.	.	.
ZKSCAN1	7586	hgsc.bcm.edu	36	7	99469685	99469686	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	AG	AG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003439	exon6	c.1621_1622del	p.541_541del	.	.	.
DEFB128	245939	hgsc.bcm.edu	36	20	118261	118261	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001037732	exon1	c.A4C	p.K2Q	.	.	.
KIF16B	55614	hgsc.bcm.edu	36	20	16444283	16444283	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024704	exon4	c.C258T	p.V86V	.	.	.
C20orf96	140680	hgsc.bcm.edu	36	20	218299	218299	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153269	exon3	c.C88T	p.Q30X	.	.	.
ENTPD6	955	hgsc.bcm.edu	36	20	25154149	25154149	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001114089	exon14	c.T1320C	p.I440I	.	.	.
CPXM1	56265	hgsc.bcm.edu	36	20	2723070	2723070	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001184699	exon14	c.C1749T	p.G583G	.	.	.
PXMP4	11264	hgsc.bcm.edu	36	20	31762131	31762131	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007238	exon3	c.G266A	p.R89H	.	.	.
PXMP4	11264	hgsc.bcm.edu	36	20	31762141	31762141	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007238	exon3	c.A256G	p.K86E	.	.	.
TRPC4AP	26133	hgsc.bcm.edu	36	20	33057233	33057233	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_199368	exon16	c.T1838C	p.L613P	.	.	.
ATRN	8455	hgsc.bcm.edu	36	20	3523196	3523196	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_139322	exon20	c.C3393T	p.G1131G	.	.	.
KIAA1755	85449	hgsc.bcm.edu	36	20	36303675	36303675	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001029864	exon3	c.A272G	p.H91R	.	.	.
DHX35	60625	hgsc.bcm.edu	36	20	37045791	37045791	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001190809	exon3	c.A210T	p.R70S	.	.	.
TTPAL	79183	hgsc.bcm.edu	36	20	42542316	42542316	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001039199	exon2	c.G263A	p.R88H	.	.	.
ZSWIM3	140831	hgsc.bcm.edu	36	20	43939796	43939796	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_080752	exon2	c.G1192A	p.V398I	.	.	.
C20orf165	128497	hgsc.bcm.edu	36	20	43948771	43948771	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_080608	exon2	c.T476A	p.M159K	.	.	.
MMP9	4318	hgsc.bcm.edu	36	20	44073035	44073035	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004994	exon4	c.C588T	p.P196P	.	.	.
SLC12A5	57468	hgsc.bcm.edu	36	20	44113798	44113798	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020708	exon18	c.C2259T	p.G753G	.	.	.
ZNF334	55713	hgsc.bcm.edu	36	20	44563482	44563482	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018102	exon5	c.A1903G	p.K635E	.	.	.
SULF2	55959	hgsc.bcm.edu	36	20	45798923	45798923	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198596	exon3	c.C346T	p.P116S	.	.	.
SLC23A2	9962	hgsc.bcm.edu	36	20	4790674	4790674	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_203327	exon15	c.G1544A	p.R515Q	.	.	.
NFATC2	4773	hgsc.bcm.edu	36	20	49482473	49482473	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012340	exon9	c.C2260T	p.R754W	.	.	.
BCAS1	8537	hgsc.bcm.edu	36	20	52003481	52003481	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003657	exon11	c.C1577T	p.T526I	.	.	.
GNAS	2778	hgsc.bcm.edu	36	20	56912234	56912234	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_080426	exon4	c.T383A	p.F128Y	.	.	.
CDH26	60437	hgsc.bcm.edu	36	20	58002710	58002710	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_177980	exon11	c.G1437A	p.P479P	.	.	.
CHGB	1114	hgsc.bcm.edu	36	20	5851381	5851381	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001819	exon4	c.T591C	p.A197A	.	.	.
ANGPT4	51378	hgsc.bcm.edu	36	20	803020	803020	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015985	exon8	c.C1258A	p.Q420K	.	.	.
DYNC1H1	1778	hgsc.bcm.edu	36	14	101541219	101541219	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001376	exon26	c.G5326A	p.A1776T	.	.	.
TEP1	7011	hgsc.bcm.edu	36	14	19934682	19934682	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007110	exon10	c.C1597A	p.L533M	.	.	.
ACIN1	22985	hgsc.bcm.edu	36	14	22619490	22619490	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001164814	exon6	c.G1068A	p.Q356Q	.	.	.
AP1G2	8906	hgsc.bcm.edu	36	14	23100636	23100636	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003917	exon18	c.G1782T	p.Q594H	.	.	.
AP1G2	8906	hgsc.bcm.edu	36	14	23102836	23102836	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003917	exon12	c.G1161T	p.Q387H	.	.	.
NOVA1	4857	hgsc.bcm.edu	36	14	25987533	25987533	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002515	exon5	c.A996G	p.L332L	.	.	.
KTN1	3895	hgsc.bcm.edu	36	14	55208087	55208087	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004986	exon35	c.G3312T	p.Q1104H	.	.	.
C14orf101	54916	hgsc.bcm.edu	36	14	56142060	56142060	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017799	exon5	c.T542G	p.F181C	.	.	.
GPHN	10243	hgsc.bcm.edu	36	14	66459347	66459347	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001024218	exon7	c.G668C	p.G223A	.	.	.
SLC39A9	55334	hgsc.bcm.edu	36	14	68978735	68978735	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018375	exon3	c.C402T	p.D134D	.	.	.
SLC8A3	6547	hgsc.bcm.edu	36	14	69703903	69703903	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033262	exon2	c.G990T	p.K330N	.	.	.
ZFYVE1	53349	hgsc.bcm.edu	36	14	72560840	72560840	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021260	exon2	c.C130T	p.R44C	.	.	.
C14orf43	91748	hgsc.bcm.edu	36	14	73275800	73275800	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001043318	exon2	c.G665T	p.G222V	.	.	.
PTPN21	11099	hgsc.bcm.edu	36	14	88005064	88005064	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007039	exon18	c.T3345C	p.T1115T	.	.	.
PTPN21	11099	hgsc.bcm.edu	36	14	88005744	88005744	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007039	exon17	c.G3087A	p.T1029T	.	.	.
TRIP11	9321	hgsc.bcm.edu	36	14	91541798	91541798	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004239	exon11	c.C2275T	p.L759L	.	.	.
SERPINA4	5267	hgsc.bcm.edu	36	14	94105583	94105583	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006215	exon5	c.C1182T	p.R394R	.	.	.
DAD1	1603	hgsc.bcm.edu	36	14	22127736	22127737	+	Frame_Shift_Del	DEL	AA	AA	-	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	AA	AA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001344	exon1	c.167_168del	p.56_56del	.	.	.
TFIP11	24144	hgsc.bcm.edu	36	22	25222749	25222749	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012143	exon11	c.A1543G	p.I515V	.	.	.
AP1B1	162	hgsc.bcm.edu	36	22	28075285	28075285	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001166019	exon11	c.C1359T	p.G453G	.	.	.
THOC5	8563	hgsc.bcm.edu	36	22	28255211	28255211	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003678	exon9	c.G865T	p.A289S	.	.	.
RBM9	23543	hgsc.bcm.edu	36	22	34485972	34485972	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001082579	exon10	c.G1015A	p.A339T	.	.	.
DDX17	10521	hgsc.bcm.edu	36	22	37213843	37213843	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001098504	exon12	c.C1671T	p.G557G	.	.	.
PARVB	29780	hgsc.bcm.edu	36	22	42885277	42885277	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001003828	exon12	c.C1025T	p.P342L	.	.	.
PARVB	29780	hgsc.bcm.edu	36	22	42891104	42891104	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001003828	exon13	c.C1078T	p.L360L	.	.	.
SAPS2	9701	hgsc.bcm.edu	36	22	49223152	49223152	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014678	exon16	c.G1715T	p.R572M	.	.	.
FDX1L	112812	hgsc.bcm.edu	36	19	10282251	10282251	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001031734	exon5	c.C463T	p.L155L	.	.	.
SMARCA4	6597	hgsc.bcm.edu	36	19	10984644	10984644	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003072	exon16	c.T2294G	p.L765R	.	.	.
KLF1	10661	hgsc.bcm.edu	36	19	12858903	12858903	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006563	exon1	c.G52T	p.G18C	.	.	.
IL27RA	9466	hgsc.bcm.edu	36	19	14022645	14022645	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004843	exon11	c.C1478T	p.T493I	.	.	.
OR7C1	26664	hgsc.bcm.edu	36	19	14771860	14771860	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198944	exon1	c.T89C	p.L30P	.	.	.
TMEM161A	54929	hgsc.bcm.edu	36	19	19104228	19104228	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017814	exon5	c.A376G	p.M126V	.	.	.
ZNF555	148254	hgsc.bcm.edu	36	19	2803634	2803634	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001172775	exon4	c.G568A	p.V190M	.	.	.
CD22	933	hgsc.bcm.edu	36	19	40524532	40524532	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001185100	exon9	c.C1859T	p.A620V	.	.	.
YIF1B	90522	hgsc.bcm.edu	36	19	43491310	43491310	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001145462	exon5	c.C408T	p.Y136Y	.	.	.
FCGBP	8857	hgsc.bcm.edu	36	19	45125041	45125041	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003890	exon2	c.C1068T	p.G356G	.	.	.
CEACAM6	4680	hgsc.bcm.edu	36	19	46952460	46952460	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002483	exon2	c.C177A	p.P59P	.	.	.
LYPD4	147719	hgsc.bcm.edu	36	19	47033880	47033880	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173506	exon4	c.G507A	p.T169T	.	.	.
C19orf61	56006	hgsc.bcm.edu	36	19	48940859	48940859	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_019108	exon6	c.T606C	p.T202T	.	.	.
KCNJ14	3770	hgsc.bcm.edu	36	19	53657006	53657006	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013348	exon2	c.G213A	p.A71A	.	.	.
GYS1	2997	hgsc.bcm.edu	36	19	54180634	54180634	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002103	exon5	c.A719G	p.H240R	.	.	.
LILRA5	353514	hgsc.bcm.edu	36	19	59510627	59510627	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021250	exon7	c.C783T	p.Y261Y	.	.	.
PPP1R12C	54776	hgsc.bcm.edu	36	19	60294677	60294677	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017607	exon22	c.G2324A	p.R775H	.	.	.
PTPRH	5794	hgsc.bcm.edu	36	19	60410007	60410007	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002842	exon3	c.G214A	p.G72S	.	.	.
ZNF71	58491	hgsc.bcm.edu	36	19	61825745	61825745	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021216	exon3	c.C1278T	p.I426I	.	.	.
ZIM2	23619	hgsc.bcm.edu	36	19	61985214	61985214	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001146326	exon10	c.G565T	p.E189X	.	.	.
ZNF551	90233	hgsc.bcm.edu	36	19	62890274	62890274	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138347	exon3	c.C771G	p.H257Q	.	.	.
HNRNPM	4670	hgsc.bcm.edu	36	19	8434546	8434546	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005968	exon5	c.C414T	p.S138S	.	.	.
KIAA0196	9897	hgsc.bcm.edu	36	8	126121244	126121244	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014846	exon24	c.G2929A	p.A977T	.	.	.
DLC1	10395	hgsc.bcm.edu	36	8	12996665	12996665	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182643	exon12	c.C3500T	p.S1167L	.	.	.
DLC1	10395	hgsc.bcm.edu	36	8	12996803	12996803	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182643	exon12	c.G3362A	p.R1121Q	.	.	.
ADCY8	114	hgsc.bcm.edu	36	8	132120975	132120975	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001115	exon1	c.G787A	p.G263S	.	.	.
KCNK9	51305	hgsc.bcm.edu	36	8	140700230	140700230	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016601	exon2	c.G578A	p.C193Y	.	.	.
TUSC3	7991	hgsc.bcm.edu	36	8	15552578	15552578	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178234	exon3	c.C310T	p.Q104X	.	.	.
ARHGEF10	9639	hgsc.bcm.edu	36	8	1844929	1844929	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014629	exon18	c.C2029A	p.L677M	.	.	.
WRN	7486	hgsc.bcm.edu	36	8	31088730	31088730	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000553	exon19	c.C2146T	p.R716C	.	.	.
FUT10	84750	hgsc.bcm.edu	36	8	33366535	33366535	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032664	exon4	c.C700T	p.L234L	.	.	.
FUT10	84750	hgsc.bcm.edu	36	8	33438441	33438441	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032664	exon2	c.C72T	p.V24V	.	.	.
DUSP26	78986	hgsc.bcm.edu	36	8	33570610	33570610	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024025	exon3	c.C419T	p.A140V	.	.	.
ANK1	286	hgsc.bcm.edu	36	8	41669808	41669808	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020475	exon30	c.G3601A	p.A1201T	.	.	.
ERICH1	157697	hgsc.bcm.edu	36	8	613504	613504	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_207332	exon4	c.C848T	p.T283I	.	.	.
PREX2	80243	hgsc.bcm.edu	36	8	69174608	69174608	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025170	exon23	c.T2691C	p.C897C	.	.	.
PREX2	80243	hgsc.bcm.edu	36	8	69179965	69179965	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025170	exon24	c.G2754A	p.R918R	.	.	.
CA1	759	hgsc.bcm.edu	36	8	86429322	86429322	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001128829	exon8	c.A517G	p.K173E	.	.	.
SLC26A7	115111	hgsc.bcm.edu	36	8	92424831	92424831	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_134266	exon9	c.A1101T	p.G367G	.	.	.
CCDC76	54482	hgsc.bcm.edu	36	1	100379072	100379072	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_019083	exon7	c.A578C	p.K193T	.	.	.
UBE4B	10277	hgsc.bcm.edu	36	1	10162124	10162124	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001105562	exon27	c.G3764A	p.R1255H	.	.	.
OLFM3	118427	hgsc.bcm.edu	36	1	102234901	102234901	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_058170	exon1	c.T60C	p.D20D	.	.	.
SORT1	6272	hgsc.bcm.edu	36	1	109695115	109695115	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002959	exon6	c.A741G	p.G247G	.	.	.
EPS8L3	79574	hgsc.bcm.edu	36	1	110096197	110096197	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_139053	exon15	c.C1380T	p.Y460Y	.	.	.
SLC6A17	388662	hgsc.bcm.edu	36	1	110542292	110542292	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001010898	exon12	c.G1887A	p.T629T	.	.	.
KCNC4	3749	hgsc.bcm.edu	36	1	110567214	110567214	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004978	exon2	c.C784T	p.R262C	.	.	.
DRAM2	128338	hgsc.bcm.edu	36	1	111462333	111462333	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178454	exon9	c.G773A	p.R258Q	.	.	.
CTTNBP2NL	55917	hgsc.bcm.edu	36	1	112793116	112793116	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018704	exon4	c.A129G	p.E43E	.	.	.
ST7L	54879	hgsc.bcm.edu	36	1	112942131	112942131	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138728	exon5	c.C607T	p.R203C	.	.	.
CSDE1	7812	hgsc.bcm.edu	36	1	115062812	115062812	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001130523	exon19	c.C2339T	p.A780V	.	.	.
TRIM45	80263	hgsc.bcm.edu	36	1	117462185	117462185	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025188	exon2	c.G1216T	p.G406X	.	.	.
POLR3GL	84265	hgsc.bcm.edu	36	1	144171023	144171023	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032305	exon3	c.C242T	p.A81V	.	.	.
LIX1L	128077	hgsc.bcm.edu	36	1	144203638	144203638	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153713	exon3	c.C503T	p.A168V	.	.	.
RFX5	5993	hgsc.bcm.edu	36	1	149582823	149582823	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001025603	exon9	c.C715T	p.R239X	.	.	.
HRNR	388697	hgsc.bcm.edu	36	1	150460364	150460364	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001009931	exon3	c.G365A	p.R122Q	.	.	.
LCE4A	199834	hgsc.bcm.edu	36	1	150948260	150948260	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178356	exon1	c.T85C	p.C29R	.	.	.
S100A14	57402	hgsc.bcm.edu	36	1	151854100	151854100	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020672	exon4	c.A200C	p.K67T	.	.	.
INTS3	65123	hgsc.bcm.edu	36	1	152012312	152012312	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_023015	exon30	c.C3071T	p.P1024L	.	.	.
CREB3L4	148327	hgsc.bcm.edu	36	1	152208032	152208032	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_130898	exon3	c.C177T	p.G59G	.	.	.
IQGAP3	128239	hgsc.bcm.edu	36	1	154788176	154788176	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178229	exon15	c.C1679A	p.P560H	.	.	.
NTRK1	4914	hgsc.bcm.edu	36	1	155078515	155078515	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001007792	exon2	c.G28A	p.A10T	.	.	.
INSRR	3645	hgsc.bcm.edu	36	1	155085815	155085815	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014215	exon6	c.G1291A	p.A431T	.	.	.
NTRK1	4914	hgsc.bcm.edu	36	1	155116463	155116463	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001012331	exon15	c.A2077G	p.I693V	.	.	.
PEAR1	375033	hgsc.bcm.edu	36	1	155146497	155146497	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001080471	exon13	c.C1651T	p.R551C	.	.	.
FCRL2	79368	hgsc.bcm.edu	36	1	156007004	156007004	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030764	exon3	c.C129T	p.N43N	.	.	.
DARC	2532	hgsc.bcm.edu	36	1	157442536	157442536	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002036	exon2	c.C683A	p.A228D	.	.	.
WDR42A	50717	hgsc.bcm.edu	36	1	158476295	158476295	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015726	exon4	c.T539C	p.V180A	.	.	.
ZNF648	127665	hgsc.bcm.edu	36	1	180292187	180292187	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001009992	exon2	c.G1582A	p.G528R	.	.	.
C1orf26	54823	hgsc.bcm.edu	36	1	183420071	183420071	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001105518	exon8	c.T1212A	p.V404V	.	.	.
PAX7	5081	hgsc.bcm.edu	36	1	18934751	18934751	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013945	exon8	c.G1188A	p.P396P	.	.	.
LHX9	56956	hgsc.bcm.edu	36	1	196157263	196157263	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020204	exon3	c.A584T	p.Y195F	.	.	.
PTPN7	5778	hgsc.bcm.edu	36	1	200395233	200395233	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_080588	exon1	c.A38C	p.E13A	.	.	.
PIK3C2B	5287	hgsc.bcm.edu	36	1	202668131	202668131	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002646	exon28	c.C3975T	p.G1325G	.	.	.
SLC26A9	115019	hgsc.bcm.edu	36	1	204157518	204157518	+	Silent	SNP	G	G	A	rs35339136	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_134325	exon17	c.C1854T	p.N618N	.	.	.
PIGR	5284	hgsc.bcm.edu	36	1	205179362	205179362	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002644	exon3	c.T113C	p.I38T	.	.	.
CD55	1604	hgsc.bcm.edu	36	1	205562510	205562510	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000574	exon2	c.G261A	p.W87X	.	.	.
C1orf74	148304	hgsc.bcm.edu	36	1	208023074	208023074	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152485	exon2	c.C529A	p.L177M	.	.	.
SYT14	255928	hgsc.bcm.edu	36	1	208339986	208339986	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153262	exon6	c.T721C	p.S241P	.	.	.
DDOST	1650	hgsc.bcm.edu	36	1	20853387	20853387	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005216	exon7	c.G761A	p.R254H	.	.	.
TRAF5	7188	hgsc.bcm.edu	36	1	209612252	209612252	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004619	exon11	c.C1259T	p.A420V	.	.	.
DUSP10	11221	hgsc.bcm.edu	36	1	219946093	219946093	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144728	exon2	c.C124T	p.R42W	.	.	.
HSPG2	3339	hgsc.bcm.edu	36	1	22046781	22046781	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005529	exon61	c.C8013T	p.P2671P	.	.	.
SUSD4	55061	hgsc.bcm.edu	36	1	221508634	221508634	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001037175	exon4	c.G368A	p.R123H	.	.	.
PGBD5	79605	hgsc.bcm.edu	36	1	228559533	228559533	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024554	exon2	c.G282A	p.T94T	.	.	.
IRF2BP2	359948	hgsc.bcm.edu	36	1	232810016	232810016	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182972	exon2	c.C1254T	p.A418A	.	.	.
NID1	4811	hgsc.bcm.edu	36	1	234278674	234278674	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002508	exon2	c.T464A	p.V155D	.	.	.
HEATR1	55127	hgsc.bcm.edu	36	1	234802700	234802700	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018072	exon25	c.G3511A	p.A1171T	.	.	.
WDR64	128025	hgsc.bcm.edu	36	1	239974363	239974363	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144625	exon12	c.C1486T	p.P496S	.	.	.
SDCCAG8	10806	hgsc.bcm.edu	36	1	241500961	241500961	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006642	exon3	c.G279A	p.P93P	.	.	.
IL22RA1	58985	hgsc.bcm.edu	36	1	24320089	24320089	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021258	exon7	c.C1518T	p.G506G	.	.	.
AHCTF1	25909	hgsc.bcm.edu	36	1	245072658	245072658	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015446	exon35	c.C6596T	p.A2199V	.	.	.
C1orf135	79000	hgsc.bcm.edu	36	1	26034472	26034472	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024037	exon3	c.C673T	p.P225S	.	.	.
ARID1A	8289	hgsc.bcm.edu	36	1	26972790	26972790	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006015	exon16	c.G3999A	p.Q1333Q	.	.	.
C1orf172	126695	hgsc.bcm.edu	36	1	27150660	27150660	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152365	exon2	c.G799A	p.V267M	.	.	.
SFRS4	6429	hgsc.bcm.edu	36	1	29347856	29347856	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005626	exon6	c.C1138T	p.R380X	.	.	.
ZCCHC17	51538	hgsc.bcm.edu	36	1	31582694	31582694	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016505	exon4	c.G210T	p.K70N	.	.	.
EIF2C4	192670	hgsc.bcm.edu	36	1	36079415	36079415	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017629	exon14	c.G1787T	p.G596V	.	.	.
DEM1	64789	hgsc.bcm.edu	36	1	40753635	40753635	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022774	exon3	c.T832A	p.S278T	.	.	.
TIE1	7075	hgsc.bcm.edu	36	1	43555854	43555854	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005424	exon16	c.G2653A	p.A885T	.	.	.
RNF220	55182	hgsc.bcm.edu	36	1	44888153	44888153	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018150	exon14	c.G1566A	p.S522S	.	.	.
TOE1	114034	hgsc.bcm.edu	36	1	45581436	45581436	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025077	exon8	c.G1008A	p.R336R	.	.	.
CYP4B1	1580	hgsc.bcm.edu	36	1	47056916	47056916	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001099772	exon12	c.T1382C	p.M461T	.	.	.
STIL	6491	hgsc.bcm.edu	36	1	47531796	47531796	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001048166	exon8	c.T793C	p.S265P	.	.	.
DOCK7	85440	hgsc.bcm.edu	36	1	62794119	62794119	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033407	exon21	c.G2561A	p.R854H	.	.	.
PIK3CD	5293	hgsc.bcm.edu	36	1	9703507	9703507	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005026	exon13	c.C1642T	p.R548W	.	.	.
PIGR	5284	hgsc.bcm.edu	36	1	205177270	205177271	+	Frame_Shift_Del	DEL	CA	CA	-	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	CA	CA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002644	exon4	c.837_838del	p.279_280del	.	.	.
CASP4	837	hgsc.bcm.edu	36	11	104324474	104324474	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033306	exon6	c.G753A	p.T251T	.	.	.
ATM	472	hgsc.bcm.edu	36	11	107628792	107628792	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000051	exon12	c.G1841A	p.S614N	.	.	.
CEP164	22897	hgsc.bcm.edu	36	11	116720146	116720146	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014956	exon4	c.T137C	p.L46P	.	.	.
CBL	867	hgsc.bcm.edu	36	11	118661449	118661449	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005188	exon11	c.C1904A	p.P635H	.	.	.
OR6M1	390261	hgsc.bcm.edu	36	11	123181927	123181927	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001005325	exon1	c.C341T	p.A114V	.	.	.
PANX3	116337	hgsc.bcm.edu	36	11	123995014	123995014	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052959	exon4	c.C1152A	p.T384T	.	.	.
DCPS	28960	hgsc.bcm.edu	36	11	125713441	125713441	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014026	exon4	c.C573T	p.F191F	.	.	.
NCAPD3	23310	hgsc.bcm.edu	36	11	133553954	133553954	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015261	exon21	c.C2647A	p.L883M	.	.	.
KRTAP5-2	440021	hgsc.bcm.edu	36	11	1575541	1575541	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001004325	exon1	c.C516A	p.C172X	.	.	.
SERGEF	26297	hgsc.bcm.edu	36	11	17984764	17984764	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012139	exon3	c.G302A	p.C101Y	.	.	.
OSBPL5	114879	hgsc.bcm.edu	36	11	3078048	3078048	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145638	exon13	c.G1333A	p.A445T	.	.	.
PRR5L	79899	hgsc.bcm.edu	36	11	36379277	36379277	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001160169	exon1	c.C30T	p.P10P	.	.	.
TTC17	55761	hgsc.bcm.edu	36	11	43429391	43429391	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018259	exon21	c.G3030T	p.K1010N	.	.	.
AMBRA1	55626	hgsc.bcm.edu	36	11	46525409	46525409	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017749	exon4	c.T208C	p.S70P	.	.	.
OR52R1	119695	hgsc.bcm.edu	36	11	4781559	4781559	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001005177	exon1	c.G628A	p.A210T	.	.	.
OR10Q1	219960	hgsc.bcm.edu	36	11	57752649	57752649	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001004471	exon1	c.C275T	p.A92V	.	.	.
MS4A14	84689	hgsc.bcm.edu	36	11	59927058	59927058	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032597	exon4	c.G416A	p.C139Y	.	.	.
MS4A12	54860	hgsc.bcm.edu	36	11	60021489	60021489	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001164470	exon2	c.A122C	p.N41T	.	.	.
PRPF19	27339	hgsc.bcm.edu	36	11	60415247	60415247	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014502	exon16	c.C1482T	p.G494G	.	.	.
TUT1	64852	hgsc.bcm.edu	36	11	62099176	62099176	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022830	exon9	c.T2705G	p.V902G	.	.	.
TAF6L	10629	hgsc.bcm.edu	36	11	62302157	62302157	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006473	exon4	c.T366C	p.C122C	.	.	.
CCKBR	887	hgsc.bcm.edu	36	11	6247963	6247963	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_176875	exon3	c.G473A	p.R158Q	.	.	.
CCKBR	887	hgsc.bcm.edu	36	11	6248471	6248471	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_176875	exon4	c.C673T	p.L225F	.	.	.
HRASLS5	117245	hgsc.bcm.edu	36	11	63014364	63014364	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001146728	exon2	c.G196A	p.A66T	.	.	.
MARK2	2011	hgsc.bcm.edu	36	11	63424007	63424007	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017490	exon8	c.T518C	p.L173P	.	.	.
MACROD1	28992	hgsc.bcm.edu	36	11	63524297	63524297	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014067	exon5	c.C642T	p.G214G	.	.	.
PYGM	5837	hgsc.bcm.edu	36	11	64275700	64275700	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001164716	exon13	c.T1508C	p.I503T	.	.	.
SPDYC	387778	hgsc.bcm.edu	36	11	64694304	64694304	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001008778	exon1	c.C22T	p.L8F	.	.	.
PACS1	55690	hgsc.bcm.edu	36	11	65745283	65745283	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018026	exon10	c.A1282G	p.T428A	.	.	.
DCHS1	8642	hgsc.bcm.edu	36	11	6604703	6604703	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003737	exon14	c.G6143A	p.R2048H	.	.	.
UCP2	7351	hgsc.bcm.edu	36	11	73366993	73366993	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003355	exon3	c.G79A	p.A27T	.	.	.
POLD3	10714	hgsc.bcm.edu	36	11	74024917	74024917	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006591	exon11	c.C1147T	p.R383X	.	.	.
IPO7	10527	hgsc.bcm.edu	36	11	9414474	9414474	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006391	exon20	c.G2253A	p.G751G	.	.	.
MYOD1	4654	hgsc.bcm.edu	36	11	17699595	17699595	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002478	exon3	c.G927C	p.A309A	MYOD1,breast,NS,Substitution - Missense,+1	.	.
ASCC3	10973	hgsc.bcm.edu	36	6	101160273	101160273	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006828	exon33	c.C5069T	p.A1690V	.	.	.
NEDD9	4739	hgsc.bcm.edu	36	6	11293494	11293494	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006403	exon7	c.G2392A	p.A798T	.	.	.
SERINC1	57515	hgsc.bcm.edu	36	6	122814814	122814814	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020755	exon6	c.G677A	p.C226Y	.	.	.
RLBP1L2	134829	hgsc.bcm.edu	36	6	123411531	123411531	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001010852	exon4	c.G630C	p.L210L	.	.	.
NCOA7	135112	hgsc.bcm.edu	36	6	126252356	126252356	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001199620	exon11	c.A1463G	p.E488G	.	.	.
L3MBTL3	84456	hgsc.bcm.edu	36	6	130496459	130496459	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032438	exon21	c.G2136T	p.E712D	.	.	.
SYNE1	23345	hgsc.bcm.edu	36	6	152569097	152569097	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015293	exon41	c.G6490T	p.E2164X	.	.	.
SYNE1	23345	hgsc.bcm.edu	36	6	152593407	152593407	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015293	exon30	c.G4735A	p.A1579T	.	.	.
SYNE1	23345	hgsc.bcm.edu	36	6	152828202	152828202	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033071	exon18	c.A1837C	p.S613R	.	.	.
PARK2	5071	hgsc.bcm.edu	36	6	161727871	161727871	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004562	exon10	c.C1112T	p.A371V	.	.	.
RPS6KA2	6196	hgsc.bcm.edu	36	6	166765906	166765906	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021135	exon15	c.G1395T	p.Q465H	.	.	.
GPLD1	2822	hgsc.bcm.edu	36	6	24537241	24537241	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001503	exon25	c.T2521G	p.X841G	.	.	.
BTN1A1	696	hgsc.bcm.edu	36	6	26616791	26616791	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001732	exon7	c.C991T	p.R331C	.	.	.
VARS2	57176	hgsc.bcm.edu	36	6	30990928	30990928	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020442	exon3	c.T218A	p.I73N	.	.	.
LST1	7940	hgsc.bcm.edu	36	6	31663064	31663064	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_205840	exon1	c.G9A	p.S3S	.	.	.
DDAH2	23564	hgsc.bcm.edu	36	6	31804434	31804434	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013974	exon3	c.C365T	p.A122V	.	.	.
ITPR3	3710	hgsc.bcm.edu	36	6	33763005	33763005	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002224	exon45	c.C6100A	p.L2034M	.	.	.
PIM1	5292	hgsc.bcm.edu	36	6	37249764	37249764	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002648	exon6	c.T861C	p.H287H	.	.	.
FAM50B	26240	hgsc.bcm.edu	36	6	3795835	3795835	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012135	exon2	c.C791T	p.P264L	.	.	.
DNAH8	1769	hgsc.bcm.edu	36	6	38926142	38926142	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001371	exon36	c.G4686A	p.L1562L	.	.	.
KCNK5	8645	hgsc.bcm.edu	36	6	39266925	39266925	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003740	exon5	c.G1219A	p.A407T	.	.	.
LRFN2	57497	hgsc.bcm.edu	36	6	40508488	40508488	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020737	exon2	c.C343A	p.L115I	.	.	.
PECI	10455	hgsc.bcm.edu	36	6	4061218	4061218	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_206836	exon10	c.A1074G	p.E358E	.	.	.
TREM2	54209	hgsc.bcm.edu	36	6	41237098	41237098	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018965	exon2	c.G272A	p.G91D	.	.	.
KIAA0240	23506	hgsc.bcm.edu	36	6	42904408	42904408	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015349	exon5	c.T359C	p.L120S	.	.	.
CUL7	9820	hgsc.bcm.edu	36	6	43120999	43120999	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014780	exon15	c.G2982T	p.Q994H	.	.	.
KLC4	89953	hgsc.bcm.edu	36	6	43147958	43147958	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_201521	exon12	c.G1475A	p.R492Q	.	.	.
ZNF318	24149	hgsc.bcm.edu	36	6	43414224	43414224	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014345	exon10	c.G5490A	p.M1830I	.	.	.
KCNQ5	56479	hgsc.bcm.edu	36	6	73961558	73961558	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001160133	exon15	c.A2556C	p.Q852H	.	.	.
LCA5	167691	hgsc.bcm.edu	36	6	80279821	80279821	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181714	exon4	c.C547T	p.R183W	.	.	.
MYH4	4622	hgsc.bcm.edu	36	17	10295472	10295472	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017533	exon28	c.G3761A	p.R1254H	.	.	.
SMG6	23293	hgsc.bcm.edu	36	17	2133674	2133674	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001170957	exon7	c.C2350T	p.R784W	.	.	.
SLFN13	146857	hgsc.bcm.edu	36	17	30793355	30793355	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144682	exon5	c.A1262G	p.E421G	.	.	.
FBXL20	84961	hgsc.bcm.edu	36	17	34684832	34684832	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032875	exon10	c.G744A	p.K248K	.	.	.
MED1	5469	hgsc.bcm.edu	36	17	34825039	34825039	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004774	exon15	c.T1377C	p.N459N	.	.	.
MED24	9862	hgsc.bcm.edu	36	17	35430061	35430061	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001079518	exon23	c.C2656A	p.R886R	.	.	.
ZZEF1	23140	hgsc.bcm.edu	36	17	3924376	3924376	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015113	exon24	c.G3502A	p.G1168S	.	.	.
CALCOCO2	10241	hgsc.bcm.edu	36	17	44285337	44285337	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005831	exon9	c.T876C	p.N292N	.	.	.
FAM117A	81558	hgsc.bcm.edu	36	17	45164954	45164954	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030802	exon2	c.T324G	p.A108A	.	.	.
RNF43	54894	hgsc.bcm.edu	36	17	53790178	53790178	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017763	exon9	c.A1958G	p.Q653R	.	.	.
WSCD1	23302	hgsc.bcm.edu	36	17	5953805	5953805	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015253	exon6	c.T1004C	p.V335A	.	.	.
SECTM1	6398	hgsc.bcm.edu	36	17	77873520	77873520	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003004	exon5	c.C553A	p.L185I	.	.	.
PRR11	55771	hgsc.bcm.edu	36	17	54601953	54601953	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018304	exon2	c.58delA	p.K20fs	.	.	.
CDC27	996	hgsc.bcm.edu	36	17	42571161	42571161	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001114091	exon13	c.T1665G	p.D555E	CDC27,lung,NS,Substitution - Missense,0	.	.
PRSS7	5651	hgsc.bcm.edu	36	21	18609346	18609346	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002772	exon17	c.G2020T	p.E674X	.	.	.
KRTAP27-1	643812	hgsc.bcm.edu	36	21	30631634	30631634	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001077711	exon1	c.G224A	p.C75Y	.	.	.
BRWD1	54014	hgsc.bcm.edu	36	21	39522338	39522338	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033656	exon27	c.C3166T	p.R1056C	.	.	.
HSF2BP	11077	hgsc.bcm.edu	36	21	43877601	43877601	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007031	exon5	c.G421A	p.V141I	.	.	.
TRPM2	7226	hgsc.bcm.edu	36	21	44635302	44635302	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003307	exon10	c.G1406A	p.R469H	.	.	.
C21orf56	84221	hgsc.bcm.edu	36	21	46412684	46412684	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001142854	exon3	c.C510T	p.T170T	.	.	.
PCNT	5116	hgsc.bcm.edu	36	21	46601352	46601352	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006031	exon13	c.G1972A	p.G658R	.	.	.
TEKT5	146279	hgsc.bcm.edu	36	16	10637161	10637161	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144674	exon6	c.G1202A	p.R401H	.	.	.
MKL2	57496	hgsc.bcm.edu	36	16	14259490	14259490	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014048	exon16	c.A2585G	p.D862G	.	.	.
MVP	9961	hgsc.bcm.edu	36	16	29752640	29752640	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017458	exon4	c.A407C	p.K136T	.	.	.
SRCAP	10847	hgsc.bcm.edu	36	16	30630691	30630691	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006662	exon12	c.T1527C	p.D509D	.	.	.
SRCAP	10847	hgsc.bcm.edu	36	16	30634951	30634951	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006662	exon17	c.T2557C	p.Y853H	.	.	.
STX1B	112755	hgsc.bcm.edu	36	16	30912022	30912022	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052874	exon9	c.C716A	p.S239Y	.	.	.
CREBBP	1387	hgsc.bcm.edu	36	16	3721846	3721846	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004380	exon29	c.C4822T	p.P1608S	.	.	.
ZNF423	23090	hgsc.bcm.edu	36	16	48322234	48322234	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015069	exon4	c.T226G	p.F76V	.	.	.
HEATR3	55027	hgsc.bcm.edu	36	16	48691701	48691701	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182922	exon13	c.C1659T	p.V553V	.	.	.
PPL	5493	hgsc.bcm.edu	36	16	4875680	4875680	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002705	exon22	c.G2977A	p.V993M	.	.	.
NAGPA	51172	hgsc.bcm.edu	36	16	5020406	5020406	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016256	exon4	c.G772A	p.G258S	.	.	.
KATNB1	10300	hgsc.bcm.edu	36	16	56335920	56335920	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005886	exon4	c.C285A	p.A95A	.	.	.
RRAD	6236	hgsc.bcm.edu	36	16	65513564	65513564	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004165	exon5	c.C843A	p.F281L	.	.	.
CTCF	10664	hgsc.bcm.edu	36	16	66219913	66219913	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001191022	exon7	c.C674T	p.A225V	.	.	.
SF3B3	23450	hgsc.bcm.edu	36	16	69153129	69153129	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012426	exon17	c.G2229A	p.S743S	.	.	.
HYDIN	54768	hgsc.bcm.edu	36	16	69707160	69707160	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032821	exon10	c.G1267A	p.V423M	.	.	.
MARVELD3	91862	hgsc.bcm.edu	36	16	70231994	70231994	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001017967	exon3	c.C796A	p.L266M	.	.	.
PHLPP2	23035	hgsc.bcm.edu	36	16	70241302	70241302	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015020	exon18	c.G2964T	p.W988C	.	.	.
ZNF821	55565	hgsc.bcm.edu	36	16	70452002	70452002	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017530	exon6	c.G533C	p.G178A	.	.	.
TXNL4B	54957	hgsc.bcm.edu	36	16	70682103	70682103	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001142317	exon2	c.A47C	p.Q16P	.	.	.
ZFHX3	463	hgsc.bcm.edu	36	16	71378756	71378756	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006885	exon10	c.G10920A	p.T3640T	.	.	.
ADAMTS18	170692	hgsc.bcm.edu	36	16	76022939	76022939	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_199355	exon3	c.C249T	p.N83N	.	.	.
USP7	7874	hgsc.bcm.edu	36	16	8905908	8905908	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003470	exon15	c.C1589T	p.A530V	.	.	.
MYH11	4629	hgsc.bcm.edu	36	16	15728296	15728298	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	CTT	CTT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001040114	exon29	c.3787_3789del	p.1263_1263del	.	.	.
ROCK1	6093	hgsc.bcm.edu	36	18	16801807	16801807	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005406	exon26	c.G3096T	p.K1032N	.	.	.
LAMA1	284217	hgsc.bcm.edu	36	18	7016007	7016007	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005559	exon17	c.C2373T	p.C791C	.	.	.
ATP9B	374868	hgsc.bcm.edu	36	18	75220413	75220413	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198531	exon26	c.C2975T	p.A992V	.	.	.
PQLC1	80148	hgsc.bcm.edu	36	18	75804372	75804372	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001146345	exon3	c.G282A	p.L94L	.	.	.
PTPRM	5797	hgsc.bcm.edu	36	18	8234097	8234097	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002845	exon15	c.G2342T	p.R781L	.	.	.
PTPRM	5797	hgsc.bcm.edu	36	18	8243338	8243338	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002845	exon17	c.C2641T	p.R881W	.	.	.
CBLB	868	hgsc.bcm.edu	36	3	106895074	106895074	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_170662	exon13	c.C2008T	p.R670W	.	.	.
SLC6A11	6538	hgsc.bcm.edu	36	3	10861015	10861015	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014229	exon5	c.C740T	p.T247I	.	.	.
DZIP3	9666	hgsc.bcm.edu	36	3	109846032	109846032	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014648	exon14	c.G1473A	p.P491P	.	.	.
ZDHHC23	254887	hgsc.bcm.edu	36	3	115159958	115159958	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173570	exon5	c.T1099C	p.Y367H	.	.	.
C3orf31	132001	hgsc.bcm.edu	36	3	11863097	11863097	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138807	exon1	c.C14T	p.T5M	.	.	.
IGSF11	152404	hgsc.bcm.edu	36	3	120104328	120104328	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152538	exon9	c.G1022A	p.G341D	.	.	.
POLQ	10721	hgsc.bcm.edu	36	3	122637805	122637805	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_199420	exon28	c.G7397A	p.R2466H	.	.	.
HCLS1	3059	hgsc.bcm.edu	36	3	122835836	122835836	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005335	exon10	c.G811A	p.V271M	.	.	.
GOLGB1	2804	hgsc.bcm.edu	36	3	122921235	122921235	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004487	exon7	c.A704C	p.D235A	.	.	.
SLC41A3	54946	hgsc.bcm.edu	36	3	127218381	127218381	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001008485	exon7	c.G773A	p.C258Y	.	.	.
TF	7018	hgsc.bcm.edu	36	3	134978752	134978752	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001063	exon16	c.T2042C	p.L681P	.	.	.
PPP2R3A	5523	hgsc.bcm.edu	36	3	137204997	137204997	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002718	exon2	c.T1967C	p.L656S	.	.	.
MSL2	55167	hgsc.bcm.edu	36	3	137353329	137353329	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018133	exon2	c.C1084T	p.R362X	.	.	.
STAG1	10274	hgsc.bcm.edu	36	3	137770345	137770345	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005862	exon5	c.G346A	p.A116T	.	.	.
TMEM43	79188	hgsc.bcm.edu	36	3	14150247	14150247	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024334	exon7	c.G520A	p.A174T	.	.	.
GRK7	131890	hgsc.bcm.edu	36	3	142981989	142981989	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_139209	exon2	c.C696T	p.G232G	.	.	.
HLTF	6596	hgsc.bcm.edu	36	3	150274705	150274705	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_139048	exon4	c.T516C	p.G172G	.	.	.
IGSF10	285313	hgsc.bcm.edu	36	3	152637827	152637827	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001178145	exon2	c.G1293T	p.E431D	.	.	.
PLCH1	23007	hgsc.bcm.edu	36	3	156796839	156796839	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001130960	exon2	c.G66A	p.M22I	.	.	.
SLC7A14	57709	hgsc.bcm.edu	36	3	171667793	171667793	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020949	exon8	c.C2060T	p.A687V	.	.	.
PLD1	5337	hgsc.bcm.edu	36	3	172914482	172914482	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001130081	exon9	c.G806A	p.S269N	.	.	.
AADACL1	57552	hgsc.bcm.edu	36	3	173834108	173834108	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001146276	exon5	c.C1198T	p.R400C	.	.	.
SPATA16	83893	hgsc.bcm.edu	36	3	174116876	174116876	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031955	exon9	c.G1428T	p.Q476H	.	.	.
ETV5	2119	hgsc.bcm.edu	36	3	187306128	187306128	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004454	exon3	c.A113G	p.D38G	.	.	.
ADIPOQ	9370	hgsc.bcm.edu	36	3	188053582	188053582	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004797	exon2	c.C41T	p.P14L	.	.	.
BCL6	604	hgsc.bcm.edu	36	3	188930157	188930157	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001130845	exon5	c.C730A	p.R244R	.	.	.
ATP13A5	344905	hgsc.bcm.edu	36	3	194490430	194490430	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198505	exon26	c.G2961A	p.V987V	.	.	.
SENP5	205564	hgsc.bcm.edu	36	3	198097571	198097571	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152699	exon2	c.C1122G	p.D374E	.	.	.
OSBPL10	114884	hgsc.bcm.edu	36	3	31718927	31718927	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017784	exon7	c.C1173T	p.G391G	.	.	.
CNOT10	25904	hgsc.bcm.edu	36	3	32744332	32744332	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015442	exon10	c.G1181C	p.R394P	.	.	.
FYCO1	79443	hgsc.bcm.edu	36	3	45998082	45998082	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024513	exon3	c.T146C	p.L49P	.	.	.
DHX30	22907	hgsc.bcm.edu	36	3	47857458	47857458	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138615	exon7	c.A454G	p.S152G	.	.	.
COL7A1	1294	hgsc.bcm.edu	36	3	48593086	48593086	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000094	exon54	c.G4984A	p.A1662T	.	.	.
IMPDH2	3615	hgsc.bcm.edu	36	3	49036991	49036991	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000884	exon13	c.T1464C	p.L488L	.	.	.
ABHD14B	84836	hgsc.bcm.edu	36	3	51978558	51978558	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001146314	exon4	c.C557T	p.A186V	.	.	.
TLR9	54106	hgsc.bcm.edu	36	3	52231451	52231451	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017442	exon2	c.C1921T	p.H641Y	.	.	.
BAP1	8314	hgsc.bcm.edu	36	3	52412667	52412667	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004656	exon13	c.C1534T	p.R512C	.	.	.
APPL1	26060	hgsc.bcm.edu	36	3	57257329	57257329	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012096	exon10	c.G773A	p.S258N	.	.	.
FLNB	2317	hgsc.bcm.edu	36	3	58099194	58099194	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001164317	exon30	c.T5100C	p.D1700D	.	.	.
MAGI1	9223	hgsc.bcm.edu	36	3	65347923	65347923	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015520	exon15	c.C2435T	p.A812V	.	.	.
RIC8B	55188	hgsc.bcm.edu	36	12	105732910	105732910	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018157	exon3	c.C439A	p.L147I	.	.	.
ATXN2	6311	hgsc.bcm.edu	36	12	110432681	110432681	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002973	exon12	c.T2127G	p.S709S	.	.	.
ALDH2	217	hgsc.bcm.edu	36	12	110720326	110720326	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000690	exon10	c.C1145T	p.A382V	.	.	.
RASAL1	8437	hgsc.bcm.edu	36	12	112043755	112043755	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004658	exon6	c.G370C	p.V124L	.	.	.
RNF10	9921	hgsc.bcm.edu	36	12	119468733	119468733	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014868	exon2	c.C300T	p.G100G	.	.	.
DUSP16	80824	hgsc.bcm.edu	36	12	12564138	12564138	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030640	exon3	c.C292G	p.L98V	.	.	.
POLE	5426	hgsc.bcm.edu	36	12	131735635	131735635	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006231	exon32	c.G4102A	p.V1368M	.	.	.
TULP3	7289	hgsc.bcm.edu	36	12	2901770	2901770	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001160408	exon4	c.C335T	p.A112V	.	.	.
TULP3	7289	hgsc.bcm.edu	36	12	2913917	2913917	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001160408	exon8	c.A853G	p.I285V	.	.	.
SLC2A13	114134	hgsc.bcm.edu	36	12	38544923	38544923	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052885	exon6	c.C1227A	p.A409A	.	.	.
DBX2	440097	hgsc.bcm.edu	36	12	43716143	43716143	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001004329	exon2	c.T425C	p.L142P	.	.	.
FAM113B	91523	hgsc.bcm.edu	36	12	45915330	45915330	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138371	exon2	c.G217A	p.G73S	.	.	.
RACGAP1	29127	hgsc.bcm.edu	36	12	48677210	48677210	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013277	exon12	c.A924T	p.K308N	.	.	.
SMARCD1	6602	hgsc.bcm.edu	36	12	48769987	48769987	+	Silent	SNP	G	G	A	rs1050726	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_139071	exon7	c.G825A	p.P275P	.	.	.
KRT76	51350	hgsc.bcm.edu	36	12	51456912	51456912	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015848	exon1	c.G431A	p.G144D	.	.	.
CSAD	51380	hgsc.bcm.edu	36	12	51838714	51838714	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015989	exon17	c.C1411T	p.R471C	.	.	.
RARG	5916	hgsc.bcm.edu	36	12	51894178	51894178	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000966	exon7	c.C745T	p.P249S	.	.	.
MMP19	4327	hgsc.bcm.edu	36	12	54520784	54520784	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002429	exon4	c.G454A	p.A152T	.	.	.
FAM62A	23344	hgsc.bcm.edu	36	12	54822719	54822719	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015292	exon26	c.G2824A	p.G942R	.	.	.
PIP4K2C	79837	hgsc.bcm.edu	36	12	56280951	56280951	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001146258	exon8	c.G904A	p.V302M	.	.	.
OS9	10956	hgsc.bcm.edu	36	12	56374885	56374885	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001017958	exon2	c.A248G	p.Q83R	.	.	.
MON2	23041	hgsc.bcm.edu	36	12	61212674	61212674	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015026	exon12	c.G1590T	p.Q530H	.	.	.
VAMP1	6843	hgsc.bcm.edu	36	12	6445689	6445689	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016830	exon2	c.A92T	p.N31I	.	.	.
CHD4	1108	hgsc.bcm.edu	36	12	6580829	6580829	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001273	exon6	c.C686T	p.A229V	.	.	.
CAND1	55832	hgsc.bcm.edu	36	12	65979119	65979119	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018448	exon7	c.A977C	p.D326A	.	.	.
DYRK2	8445	hgsc.bcm.edu	36	12	66338070	66338070	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003583	exon2	c.T897A	p.S299R	.	.	.
CPSF6	11052	hgsc.bcm.edu	36	12	67938965	67938965	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007007	exon6	c.G1023A	p.P341P	.	.	.
TPH2	121278	hgsc.bcm.edu	36	12	70652688	70652688	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173353	exon6	c.C731A	p.P244H	.	.	.
TRHDE	29953	hgsc.bcm.edu	36	12	71179580	71179580	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013381	exon6	c.A1485C	p.E495D	.	.	.
GLIPR1L1	256710	hgsc.bcm.edu	36	12	74027679	74027679	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152779	exon3	c.C431T	p.A144V	.	.	.
CD163L1	283316	hgsc.bcm.edu	36	12	7413514	7413514	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_174941	exon15	c.C3745T	p.R1249C	.	.	.
CD163L1	283316	hgsc.bcm.edu	36	12	7439989	7439989	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_174941	exon8	c.T2019G	p.S673R	.	.	.
E2F7	144455	hgsc.bcm.edu	36	12	75961102	75961102	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_203394	exon7	c.C997T	p.R333X	.	.	.
TMTC2	160335	hgsc.bcm.edu	36	12	81814176	81814176	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152588	exon3	c.G1103T	p.S368I	.	.	.
SLC6A15	55117	hgsc.bcm.edu	36	12	83794468	83794468	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182767	exon6	c.T806C	p.L269P	.	.	.
DUSP6	1848	hgsc.bcm.edu	36	12	88268592	88268592	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001946	exon2	c.G742T	p.E248X	.	.	.
MRPL42	28977	hgsc.bcm.edu	36	12	92397367	92397367	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_172178	exon5	c.T207C	p.Y69Y	.	.	.
IKIP	121457	hgsc.bcm.edu	36	12	97531662	97531662	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_201612	exon3	c.A885G	p.E295E	.	.	.
SLC17A8	246213	hgsc.bcm.edu	36	12	99311356	99311356	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_139319	exon4	c.C552T	p.C184C	.	.	.
CYFIP1	23191	hgsc.bcm.edu	36	15	20506575	20506575	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014608	exon15	c.G1528A	p.V510I	.	.	.
CYFIP1	23191	hgsc.bcm.edu	36	15	20506625	20506625	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014608	exon15	c.G1578A	p.E526E	.	.	.
CHRM5	1133	hgsc.bcm.edu	36	15	32142919	32142919	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012125	exon3	c.A709G	p.T237A	.	.	.
SLC12A6	9990	hgsc.bcm.edu	36	15	32331795	32331795	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001042497	exon8	c.G1156A	p.V386I	.	.	.
DNAJC17	55192	hgsc.bcm.edu	36	15	38886908	38886908	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018163	exon1	c.T29C	p.M10T	.	.	.
DUOX1	53905	hgsc.bcm.edu	36	15	43220532	43220532	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017434	exon14	c.C1537T	p.R513C	.	.	.
CGNL1	84952	hgsc.bcm.edu	36	15	55597892	55597892	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032866	exon10	c.C2620T	p.R874X	.	.	.
CCNB2	9133	hgsc.bcm.edu	36	15	57204349	57204349	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004701	exon9	c.C1178A	p.P393Q	.	.	.
KIF23	9493	hgsc.bcm.edu	36	15	67519705	67519705	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004856	exon17	c.G1892A	p.R631H	.	.	.
KIAA1199	57214	hgsc.bcm.edu	36	15	78988622	78988622	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018689	exon13	c.C1717A	p.P573T	.	.	.
ZNF592	9640	hgsc.bcm.edu	36	15	83127070	83127070	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014630	exon4	c.T160C	p.L54L	.	.	.
KIF7	374654	hgsc.bcm.edu	36	15	87977167	87977167	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198525	exon14	c.C2783T	p.A928V	.	.	.
CRTC3	64784	hgsc.bcm.edu	36	15	88973595	88973595	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022769	exon11	c.C1093T	p.R365C	.	.	.
BLM	641	hgsc.bcm.edu	36	15	89111241	89111241	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000057	exon10	c.A2291G	p.Y764C	.	.	.
HADH	3033	hgsc.bcm.edu	36	4	109173786	109173786	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001184705	exon8	c.G766A	p.A256T	.	.	.
EGF	1950	hgsc.bcm.edu	36	4	111121444	111121444	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001963	exon15	c.C2235T	p.C745C	.	.	.
ANK2	287	hgsc.bcm.edu	36	4	114190399	114190399	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020977	exon1	c.G66A	p.R22R	.	.	.
ANK2	287	hgsc.bcm.edu	36	4	114513912	114513912	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020977	exon44	c.G5462A	p.R1821Q	.	.	.
EXOSC9	5393	hgsc.bcm.edu	36	4	122953913	122953913	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001034194	exon9	c.C902T	p.A301V	.	.	.
LARP1B	55132	hgsc.bcm.edu	36	4	129238915	129238915	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178043	exon8	c.A793G	p.N265D	.	.	.
GAB1	2549	hgsc.bcm.edu	36	4	144580481	144580481	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_207123	exon5	c.T1272C	p.H424H	.	.	.
FBXW7	55294	hgsc.bcm.edu	36	4	153468835	153468835	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018315	exon8	c.C1153T	p.R385C	FBXW7,large_intestine,NS,Substitution - Missense,+1	.	.
FBXW7	55294	hgsc.bcm.edu	36	4	153552067	153552067	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033632	exon2	c.G339T	p.E113D	.	.	.
ARFIP1	27236	hgsc.bcm.edu	36	4	154028865	154028865	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001025593	exon7	c.C826T	p.R276C	.	.	.
FGFBP1	9982	hgsc.bcm.edu	36	4	15547061	15547061	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005130	exon2	c.G293A	p.G98D	.	.	.
FSTL5	56884	hgsc.bcm.edu	36	4	162916573	162916573	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020116	exon5	c.C513T	p.D171D	.	.	.
NCAPG	64151	hgsc.bcm.edu	36	4	17435717	17435717	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022346	exon10	c.C1412T	p.A471V	.	.	.
WHSC1	7468	hgsc.bcm.edu	36	4	1889928	1889928	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133331	exon6	c.T1190C	p.M397T	.	.	.
ZNF141	7700	hgsc.bcm.edu	36	4	357493	357493	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003441	exon4	c.T1267C	p.Y423H	.	.	.
ZNF509	166793	hgsc.bcm.edu	36	4	4354989	4354989	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145291	exon3	c.G525A	p.P175P	.	.	.
AFM	173	hgsc.bcm.edu	36	4	74579997	74579997	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001133	exon9	c.G1175A	p.G392D	.	.	.
CDKL2	8999	hgsc.bcm.edu	36	4	76770160	76770160	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003948	exon2	c.G37A	p.G13R	.	.	.
PRKG2	5593	hgsc.bcm.edu	36	4	82309886	82309886	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006259	exon4	c.G803T	p.R268M	.	.	.
HNRNPD	3184	hgsc.bcm.edu	36	4	83497509	83497509	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031370	exon5	c.A734G	p.H245R	.	.	.
WDFY3	23001	hgsc.bcm.edu	36	4	85969196	85969196	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014991	exon9	c.G941A	p.C314Y	.	.	.
GAK	2580	hgsc.bcm.edu	36	4	861491	861491	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005255	exon16	c.A1768G	p.K590E	.	.	.
UNC5C	8633	hgsc.bcm.edu	36	4	96359400	96359400	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003728	exon9	c.T1388C	p.I463T	.	.	.
GPRASP1	9737	hgsc.bcm.edu	36	X	101798928	101798928	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001099411	exon3	c.G3431A	p.C1144Y	.	.	.
ATP1B4	23439	hgsc.bcm.edu	36	X	119384625	119384625	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001142447	exon2	c.G281T	p.W94L	.	.	.
ATP1B4	23439	hgsc.bcm.edu	36	X	119388651	119388651	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001142447	exon3	c.A382T	p.T128S	.	.	.
PRPS2	5634	hgsc.bcm.edu	36	X	12737325	12737325	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001039091	exon3	c.G367T	p.G123W	.	.	.
ZNF280C	55609	hgsc.bcm.edu	36	X	129201347	129201347	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017666	exon6	c.A383C	p.D128A	.	.	.
RP13-102H20.1	158763	hgsc.bcm.edu	36	X	130045445	130045445	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144967	exon4	c.A376G	p.T126A	.	.	.
MAGEC2	51438	hgsc.bcm.edu	36	X	141119226	141119226	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016249	exon3	c.C214T	p.P72S	.	.	.
MAGEA11	4110	hgsc.bcm.edu	36	X	148576467	148576467	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001011544	exon5	c.T705C	p.F235F	.	.	.
CNGA2	1260	hgsc.bcm.edu	36	X	150657978	150657978	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005140	exon3	c.C174A	p.A58A	.	.	.
GABRQ	55879	hgsc.bcm.edu	36	X	151566277	151566277	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018558	exon4	c.C519T	p.Y173Y	.	.	.
G6PD	2539	hgsc.bcm.edu	36	X	153415870	153415870	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000402	exon6	c.G611A	p.G204E	.	.	.
TMLHE	55217	hgsc.bcm.edu	36	X	154407468	154407468	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001184797	exon3	c.C201T	p.T67T	.	.	.
SH3KBP1	30011	hgsc.bcm.edu	36	X	19612000	19612000	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001024666	exon5	c.C477T	p.A159A	.	.	.
ZFX	7543	hgsc.bcm.edu	36	X	24135452	24135452	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001178095	exon4	c.C735T	p.G245G	.	.	.
IL1RAPL1	11141	hgsc.bcm.edu	36	X	29882607	29882607	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014271	exon10	c.G1249A	p.D417N	.	.	.
MAGEB4	4115	hgsc.bcm.edu	36	X	30170525	30170525	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002367	exon1	c.C352A	p.Q118K	.	.	.
DMD	1756	hgsc.bcm.edu	36	X	31134685	31134685	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004015	exon5	c.G380A	p.R127H	.	.	.
CXorf59	286464	hgsc.bcm.edu	36	X	36032714	36032714	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173695	exon8	c.A1030G	p.K344E	.	.	.
RPGR	6103	hgsc.bcm.edu	36	X	38045530	38045530	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000328	exon9	c.G973A	p.G325R	.	.	.
MED14	9282	hgsc.bcm.edu	36	X	40399193	40399193	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004229	exon29	c.G4036A	p.A1346T	.	.	.
MED14	9282	hgsc.bcm.edu	36	X	40441239	40441239	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004229	exon13	c.G1631A	p.R544H	.	.	.
USP9X	8239	hgsc.bcm.edu	36	X	40930785	40930785	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001039590	exon24	c.C3630T	p.S1210S	.	.	.
GPR34	2857	hgsc.bcm.edu	36	X	41440053	41440053	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005300	exon3	c.G223A	p.A75T	.	.	.
UBA1	7317	hgsc.bcm.edu	36	X	46955515	46955515	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153280	exon20	c.G2411A	p.G804D	.	.	.
ARAF	369	hgsc.bcm.edu	36	X	47315681	47315681	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001654	exon16	c.G1702T	p.E568X	.	.	.
EBP	10682	hgsc.bcm.edu	36	X	48267321	48267321	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006579	exon2	c.G218T	p.G73V	.	.	.
SUV39H1	6839	hgsc.bcm.edu	36	X	48444036	48444036	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003173	exon3	c.G776A	p.R259H	.	.	.
FOXP3	50943	hgsc.bcm.edu	36	X	48994750	48994750	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014009	exon12	c.C1285T	p.P429S	.	.	.
CLCN5	1184	hgsc.bcm.edu	36	X	49721324	49721324	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127899	exon5	c.G214T	p.D72Y	.	.	.
SMC1A	8243	hgsc.bcm.edu	36	X	53443338	53443338	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006306	exon16	c.G2460A	p.Q820Q	.	.	.
AR	367	hgsc.bcm.edu	36	X	66854061	66854061	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001011645	exon5	c.C594T	p.H198H	.	.	.
SNX12	29934	hgsc.bcm.edu	36	X	70199484	70199484	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013346	exon2	c.G206A	p.R69Q	.	.	.
NLGN3	54413	hgsc.bcm.edu	36	X	70306075	70306075	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001166660	exon6	c.G1830A	p.P610P	.	.	.
DACH2	117154	hgsc.bcm.edu	36	X	85290446	85290446	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_053281	exon1	c.G166A	p.G56R	.	.	.
DACH2	117154	hgsc.bcm.edu	36	X	85856214	85856214	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_053281	exon6	c.T939C	p.D313D	.	.	.
NAP1L3	4675	hgsc.bcm.edu	36	X	92814503	92814503	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004538	exon1	c.G457A	p.A153T	.	.	.
SHROOM2	357	hgsc.bcm.edu	36	X	9819071	9819071	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001649	exon3	c.C372T	p.D124D	.	.	.
LONRF2	164832	hgsc.bcm.edu	36	2	100269957	100269957	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198461	exon11	c.G1921A	p.V641M	.	.	.
CHST10	9486	hgsc.bcm.edu	36	2	100389569	100389569	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004854	exon3	c.A1G	p.M1V	.	.	.
MFSD9	84804	hgsc.bcm.edu	36	2	102701355	102701355	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032718	exon6	c.C1381T	p.R461X	.	.	.
PTPN4	5775	hgsc.bcm.edu	36	2	120431074	120431074	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002830	exon22	c.G2084T	p.R695L	.	.	.
SAP130	79595	hgsc.bcm.edu	36	2	128470396	128470396	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001145928	exon11	c.C1431T	p.N477N	.	.	.
LRP1B	53353	hgsc.bcm.edu	36	2	141479395	141479395	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018557	exon15	c.G2482A	p.E828K	.	.	.
NBAS	51594	hgsc.bcm.edu	36	2	15616186	15616186	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015909	exon2	c.T141G	p.G47G	.	.	.
PLA2R1	22925	hgsc.bcm.edu	36	2	160584914	160584914	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007366	exon8	c.G1401A	p.E467E	.	.	.
SCN1A	6323	hgsc.bcm.edu	36	2	166607146	166607146	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001165964	exon12	c.G1994T	p.R665M	.	.	.
LRP2	4036	hgsc.bcm.edu	36	2	169800750	169800750	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004525	exon29	c.G4766A	p.R1589H	.	.	.
COL3A1	1281	hgsc.bcm.edu	36	2	189583832	189583832	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000090	exon50	c.A4225C	p.T1409P	.	.	.
PLCL1	5334	hgsc.bcm.edu	36	2	198658995	198658995	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006226	exon2	c.G2509T	p.E837X	.	.	.
ORC2L	4999	hgsc.bcm.edu	36	2	201504348	201504348	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006190	exon11	c.A876G	p.Q292Q	.	.	.
CASP8	841	hgsc.bcm.edu	36	2	201857955	201857955	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033356	exon7	c.G929A	p.G310D	.	.	.
MAP2	4133	hgsc.bcm.edu	36	2	210266051	210266051	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002374	exon7	c.G912T	p.W304C	.	.	.
CPS1	1373	hgsc.bcm.edu	36	2	211185241	211185241	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001122634	exon10	c.G1194A	p.T398T	.	.	.
SPAG16	79582	hgsc.bcm.edu	36	2	214983223	214983223	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024532	exon16	c.C1835A	p.S612Y	.	.	.
FN1	2335	hgsc.bcm.edu	36	2	216007723	216007723	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_212476	exon2	c.C218T	p.A73V	.	.	.
CCDC108	255101	hgsc.bcm.edu	36	2	219599063	219599063	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_194302	exon14	c.G2274A	p.T758T	.	.	.
FAM134A	79137	hgsc.bcm.edu	36	2	219755067	219755067	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024293	exon9	c.C1104T	p.P368P	.	.	.
FAM134A	79137	hgsc.bcm.edu	36	2	219755505	219755505	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024293	exon9	c.G1542A	p.P514P	.	.	.
SLC4A3	6508	hgsc.bcm.edu	36	2	220212584	220212584	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005070	exon20	c.G3160A	p.V1054I	.	.	.
KCNE4	23704	hgsc.bcm.edu	36	2	223625930	223625930	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_080671	exon2	c.C138T	p.Y46Y	.	.	.
SERPINE2	5270	hgsc.bcm.edu	36	2	224571189	224571189	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001136530	exon3	c.C410A	p.P137H	.	.	.
TRIP12	9320	hgsc.bcm.edu	36	2	230383960	230383960	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004238	exon14	c.C1957T	p.Q653X	.	.	.
PSMD1	5707	hgsc.bcm.edu	36	2	231651691	231651691	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002807	exon10	c.T1146C	p.S382S	.	.	.
ECEL1	9427	hgsc.bcm.edu	36	2	233058010	233058010	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004826	exon4	c.G891A	p.V297V	.	.	.
PER2	8864	hgsc.bcm.edu	36	2	238831712	238831712	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022817	exon16	c.C1844T	p.A615V	.	.	.
NCOA1	8648	hgsc.bcm.edu	36	2	24844650	24844650	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003743	exon21	c.C4212T	p.G1404G	.	.	.
ADCY3	109	hgsc.bcm.edu	36	2	24994916	24994916	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004036	exon1	c.G445A	p.A149T	.	.	.
DPYSL5	56896	hgsc.bcm.edu	36	2	27019012	27019012	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020134	exon11	c.C1330T	p.R444C	.	.	.
ALK	238	hgsc.bcm.edu	36	2	29283550	29283550	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004304	exon26	c.C3929A	p.T1310K	.	.	.
FOXN2	3344	hgsc.bcm.edu	36	2	48427026	48427026	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002158	exon3	c.A169G	p.T57A	.	.	.
SPTBN1	6711	hgsc.bcm.edu	36	2	54709691	54709691	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003128	exon14	c.G1916A	p.R639H	.	.	.
RTN4	57142	hgsc.bcm.edu	36	2	55107228	55107228	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020532	exon3	c.T1511C	p.I504T	.	.	.
CCDC88A	55704	hgsc.bcm.edu	36	2	55426877	55426877	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001135597	exon10	c.A979G	p.S327G	.	.	.
CCDC88A	55704	hgsc.bcm.edu	36	2	55436273	55436273	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001135597	exon8	c.T746C	p.L249P	.	.	.
EFEMP1	2202	hgsc.bcm.edu	36	2	55958389	55958389	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001039348	exon7	c.C756T	p.C252C	.	.	.
PLEK	5341	hgsc.bcm.edu	36	2	68460980	68460980	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002664	exon2	c.C59T	p.T20M	.	.	.
RAB11FIP5	26056	hgsc.bcm.edu	36	2	73156790	73156790	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015470	exon4	c.G1597A	p.A533T	.	.	.
DUSP11	8446	hgsc.bcm.edu	36	2	73854527	73854527	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003584	exon4	c.T482A	p.I161N	.	.	.
TACR1	6869	hgsc.bcm.edu	36	2	75279478	75279478	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015727	exon1	c.C91A	p.Q31K	.	.	.
MAL	4118	hgsc.bcm.edu	36	2	95082893	95082893	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002371	exon4	c.C428T	p.A143V	.	.	.
TGFBR1	7046	hgsc.bcm.edu	36	9	100949797	100949797	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004612	exon8	c.A1296G	p.V432V	.	.	.
ALG2	85365	hgsc.bcm.edu	36	9	101020752	101020752	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033087	exon2	c.T536A	p.F179Y	.	.	.
ZNF189	7743	hgsc.bcm.edu	36	9	103211248	103211248	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_197977	exon4	c.T1251C	p.D417D	.	.	.
PPP3R2	5535	hgsc.bcm.edu	36	9	103396884	103396884	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_147180	exon1	c.G150A	p.P50P	.	.	.
URM1	81605	hgsc.bcm.edu	36	9	130191388	130191388	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001135947	exon4	c.C216T	p.N72N	.	.	.
SPTAN1	6709	hgsc.bcm.edu	36	9	130410030	130410030	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001195532	exon32	c.G4165A	p.G1389R	.	.	.
SH3GLB2	56904	hgsc.bcm.edu	36	9	130816872	130816872	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020145	exon4	c.C467T	p.S156L	.	.	.
SETX	23064	hgsc.bcm.edu	36	9	134194226	134194226	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015046	exon10	c.C2580T	p.N860N	.	.	.
ADAMTSL2	9719	hgsc.bcm.edu	36	9	135429772	135429772	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001145320	exon19	c.G2821A	p.A941T	.	.	.
DBH	1621	hgsc.bcm.edu	36	9	135497278	135497278	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000787	exon3	c.G615A	p.P205P	.	.	.
COL5A1	1289	hgsc.bcm.edu	36	9	136732924	136732924	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000093	exon4	c.G578A	p.R193H	.	.	.
BNC2	54796	hgsc.bcm.edu	36	9	16425881	16425881	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017637	exon6	c.G2311A	p.V771I	.	.	.
ACER2	340485	hgsc.bcm.edu	36	9	19436292	19436292	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001010887	exon5	c.C517T	p.R173C	.	.	.
TAF1L	138474	hgsc.bcm.edu	36	9	32623102	32623102	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153809	exon1	c.C2476A	p.L826I	.	.	.
NOL6	65083	hgsc.bcm.edu	36	9	33455245	33455245	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022917	exon20	c.G2641A	p.A881T	.	.	.
CCL27	10850	hgsc.bcm.edu	36	9	34652565	34652565	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006664	exon1	c.A66G	p.T22T	.	.	.
PCSK5	5125	hgsc.bcm.edu	36	9	77828579	77828579	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001190482	exon4	c.G517T	p.G173X	.	.	.
GKAP1	80318	hgsc.bcm.edu	36	9	85611072	85611072	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025211	exon3	c.A181C	p.K61Q	.	.	.
VCP	7415	hgsc.bcm.edu	36	9	35049647	35049647	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007126	exon14	c.1847delA	p.N616fs	.	.	.
GKAP1	80318	hgsc.bcm.edu	36	9	85611066	85611067	+	Frame_Shift_Del	DEL	TC	TC	-	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	TC	TC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025211	exon3	c.186_187del	p.62_63del	.	.	.
C13orf16	121793	hgsc.bcm.edu	36	13	110778582	110778582	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152324	exon3	c.G110A	p.R37Q	.	.	.
RASA3	22821	hgsc.bcm.edu	36	13	113784485	113784485	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007368	exon19	c.C1768T	p.R590W	.	.	.
EFHA1	221154	hgsc.bcm.edu	36	13	20982180	20982180	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152726	exon8	c.A724C	p.R242R	.	.	.
RNF6	6049	hgsc.bcm.edu	36	13	25687264	25687264	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005977	exon5	c.G755A	p.R252H	.	.	.
WASF3	10810	hgsc.bcm.edu	36	13	26139738	26139738	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006646	exon5	c.C353T	p.P118L	.	.	.
WASF3	10810	hgsc.bcm.edu	36	13	26153207	26153207	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006646	exon8	c.G733A	p.V245I	.	.	.
BRCA2	675	hgsc.bcm.edu	36	13	31852180	31852180	+	Missense_Mutation	SNP	C	C	T	rs45580035	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000059	exon24	c.C9154T	p.R3052W	.	.	.
KBTBD6	89890	hgsc.bcm.edu	36	13	40603067	40603067	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152903	exon1	c.T1581C	p.C527C	.	.	.
ENOX1	55068	hgsc.bcm.edu	36	13	42770544	42770544	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127615	exon12	c.G1384T	p.E462X	.	.	.
ABCC4	10257	hgsc.bcm.edu	36	13	94656996	94656996	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001105515	exon8	c.G952A	p.G318R	.	.	.
ABCC2	1244	hgsc.bcm.edu	36	10	101591791	101591791	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000392	exon26	c.A3692G	p.D1231G	.	.	.
DNMBP	23268	hgsc.bcm.edu	36	10	101705028	101705028	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015221	exon4	c.C2193T	p.T731T	.	.	.
COL17A1	1308	hgsc.bcm.edu	36	10	105788213	105788213	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000494	exon45	c.C3011T	p.P1004L	.	.	.
SORCS1	114815	hgsc.bcm.edu	36	10	108913842	108913842	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052918	exon1	c.C433T	p.R145W	.	.	.
ABLIM1	3983	hgsc.bcm.edu	36	10	116434086	116434086	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001003407	exon1	c.A17G	p.E6G	.	.	.
GFRA1	2674	hgsc.bcm.edu	36	10	118019026	118019026	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001145453	exon4	c.C397T	p.R133W	.	.	.
C10orf88	80007	hgsc.bcm.edu	36	10	124698267	124698267	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024942	exon4	c.C536G	p.A179G	.	.	.
CTBP2	1488	hgsc.bcm.edu	36	10	126705920	126705920	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022802	exon1	c.C399T	p.S133S	.	.	.
FAM171A1	221061	hgsc.bcm.edu	36	10	15330678	15330678	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001010924	exon5	c.C720A	p.A240A	.	.	.
SVIL	6840	hgsc.bcm.edu	36	10	29853454	29853454	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003174	exon12	c.A1261G	p.N421D	.	.	.
ZEB1	6935	hgsc.bcm.edu	36	10	31849337	31849337	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001174093	exon6	c.A1008C	p.K336N	.	.	.
ITGB1	3688	hgsc.bcm.edu	36	10	33240935	33240935	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133376	exon12	c.C1593T	p.C531C	.	.	.
DIP2C	22982	hgsc.bcm.edu	36	10	435104	435104	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014974	exon10	c.G1205A	p.G402D	.	.	.
SLC18A3	6572	hgsc.bcm.edu	36	10	50490200	50490200	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003055	exon1	c.C1408T	p.R470C	.	.	.
HERC4	26091	hgsc.bcm.edu	36	10	69420121	69420121	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022079	exon14	c.A1486G	p.S496G	.	.	.
PCDH21	92211	hgsc.bcm.edu	36	10	85955567	85955567	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001171971	exon10	c.C867T	p.N289N	.	.	.
KIF20B	9585	hgsc.bcm.edu	36	10	91459085	91459085	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016195	exon4	c.T238C	p.C80R	.	.	.
TLL2	7093	hgsc.bcm.edu	36	10	98163013	98163013	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012465	exon8	c.G974T	p.R325M	.	.	.
OLAH	55301	hgsc.bcm.edu	36	10	15138979	15138979	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018324	exon4	c.314delT	p.I105fs	.	.	.
SLCO6A1	133482	hgsc.bcm.edu	36	5	101776727	101776727	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173488	exon9	c.C1492A	p.L498I	.	.	.
GDF9	2661	hgsc.bcm.edu	36	5	132225621	132225621	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005260	exon2	c.G924C	p.E308D	.	.	.
PHF15	23338	hgsc.bcm.edu	36	5	133942479	133942479	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015288	exon11	c.G1946A	p.R649H	.	.	.
PCDHAC1	56135	hgsc.bcm.edu	36	5	140288020	140288020	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031882	exon1	c.C1359T	p.F453F	.	.	.
ARAP3	64411	hgsc.bcm.edu	36	5	141021796	141021796	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022481	exon20	c.C3011T	p.A1004V	.	.	.
TCERG1	10915	hgsc.bcm.edu	36	5	145829478	145829478	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001040006	exon6	c.A1314C	p.K438N	.	.	.
NDST1	3340	hgsc.bcm.edu	36	5	149899082	149899082	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001543	exon7	c.G1537A	p.E513K	.	.	.
SLC36A3	285641	hgsc.bcm.edu	36	5	150658353	150658353	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181774	exon2	c.C213T	p.G71G	.	.	.
FAT2	2196	hgsc.bcm.edu	36	5	150902498	150902498	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001447	exon9	c.C8383T	p.P2795S	.	.	.
GRIA1	2890	hgsc.bcm.edu	36	5	153010256	153010256	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001114183	exon4	c.A634G	p.I212V	.	.	.
LARP1	23367	hgsc.bcm.edu	36	5	154159774	154159774	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015315	exon10	c.G1464A	p.R488R	.	.	.
ADRA1B	147	hgsc.bcm.edu	36	5	159277000	159277000	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000679	exon1	c.G510T	p.W170C	.	.	.
CCDC99	54908	hgsc.bcm.edu	36	5	168953774	168953774	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017785	exon5	c.G579A	p.Q193Q	.	.	.
CLK4	57396	hgsc.bcm.edu	36	5	177963255	177963255	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020666	exon13	c.A1415G	p.H472R	.	.	.
PDZD2	23037	hgsc.bcm.edu	36	5	32046304	32046304	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178140	exon5	c.G1366A	p.G456R	.	.	.
EGFLAM	133584	hgsc.bcm.edu	36	5	38388146	38388146	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152403	exon5	c.T501G	p.S167R	.	.	.
LIFR	3977	hgsc.bcm.edu	36	5	38546448	38546448	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127671	exon7	c.T866C	p.L289S	.	.	.
CARD6	84674	hgsc.bcm.edu	36	5	40889351	40889351	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032587	exon3	c.T2160C	p.G720G	.	.	.
CARD6	84674	hgsc.bcm.edu	36	5	40889526	40889526	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032587	exon3	c.C2335T	p.R779X	.	.	.
GHR	2690	hgsc.bcm.edu	36	5	42754731	42754731	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000163	exon10	c.A1365G	p.K455K	.	.	.
SNX18	112574	hgsc.bcm.edu	36	5	53850439	53850439	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001145427	exon1	c.G900A	p.L300L	.	.	.
DHX29	54505	hgsc.bcm.edu	36	5	54603728	54603728	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_019030	exon18	c.T2808C	p.G936G	.	.	.
POLS	11044	hgsc.bcm.edu	36	5	6790678	6790678	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001171805	exon2	c.G22A	p.A8T	.	.	.
PTCD2	79810	hgsc.bcm.edu	36	5	71689953	71689953	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024754	exon10	c.G1110T	p.K370N	.	.	.
TNPO1	3842	hgsc.bcm.edu	36	5	72214052	72214052	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153188	exon10	c.T899C	p.L300S	.	.	.
ADCY2	108	hgsc.bcm.edu	36	5	7759890	7759890	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020546	exon8	c.C1143T	p.N381N	.	.	.
VCAN	1462	hgsc.bcm.edu	36	5	82853255	82853255	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001164098	exon7	c.G3374A	p.R1125H	.	.	.
RASA1	5921	hgsc.bcm.edu	36	5	86708581	86708581	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002890	exon17	c.G2312A	p.C771Y	.	.	.
BRD9	65980	hgsc.bcm.edu	36	5	917637	917637	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_023924	exon16	c.C1740T	p.H580H	.	.	.
ZNF826	664701	hgsc.bcm.edu	36	19	20369274	20369274	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	.	.	.	.	.	.	.
MAT2A	4144	hgsc.bcm.edu	36	2	85623382	85623382	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	.	.	.	.	.	.	.