Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
TES	26136	hgsc.bcm.edu	36	7	115677744	115677744	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015641	exon4	c.G660A	p.G220G	.	.	.
TXNDC3	51314	hgsc.bcm.edu	36	7	37870520	37870520	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016616	exon9	c.G500T	p.S167I	.	.	.
WBSCR17	64409	hgsc.bcm.edu	36	7	70523925	70523925	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_022479	exon5	c.G860A	p.R287Q	.	.	.
GTPBP10	85865	hgsc.bcm.edu	36	7	89814005	89814005	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_033107	exon1	c.G14A	p.S5N	.	.	.
SIRPB1	10326	hgsc.bcm.edu	36	20	1499639	1499639	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006065	exon4	c.C896T	p.S299L	.	.	.
MYH6	4624	hgsc.bcm.edu	36	14	22927299	22927299	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002471	exon30	c.C4264T	p.R1422W	.	.	.
ADRA1A	148	hgsc.bcm.edu	36	8	26777956	26777956	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_033302	exon1	c.G448A	p.V150I	.	.	.
NOTCH2NL	388677	hgsc.bcm.edu	36	1	143960233	143960233	+	Missense_Mutation	SNP	A	A	G	rs61788900	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_203458	exon2	c.A20G	p.N7S	.	.	.
PAX7	5081	hgsc.bcm.edu	36	1	18835445	18835445	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_013945	exon4	c.C573T	p.G191G	.	.	.
MFSD4	148808	hgsc.bcm.edu	36	1	203821896	203821896	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_181644	exon6	c.C1087T	p.R363W	.	.	.
LUZP1	7798	hgsc.bcm.edu	36	1	23290329	23290329	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_033631	exon4	c.C3013T	p.R1005C	.	.	.
GRIK3	2899	hgsc.bcm.edu	36	1	37080090	37080090	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000831	exon10	c.C1364T	p.T455M	.	.	.
LRRC7	57554	hgsc.bcm.edu	36	1	70277639	70277639	+	Missense_Mutation	SNP	G	G	A	rs61734800	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020794	exon19	c.G3430A	p.G1144S	.	.	.
EFHD2	79180	hgsc.bcm.edu	36	1	15625096	15625096	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_024329	exon2	c.C451T	p.R151W	.	.	.
GUCY1A2	2977	hgsc.bcm.edu	36	11	106063546	106063546	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000855	exon8	c.C2138T	p.S713L	.	.	.
BTG4	54766	hgsc.bcm.edu	36	11	110871204	110871204	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_017589	exon5	c.C556T	p.R186C	.	.	.
REV3L	5980	hgsc.bcm.edu	36	6	111803012	111803012	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002912	exon13	c.G3239A	p.R1080Q	.	.	.
NKAPL	222698	hgsc.bcm.edu	36	6	28335159	28335159	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001007531	exon1	c.G31A	p.E11K	.	.	.
DNAH8	1769	hgsc.bcm.edu	36	6	38962718	38962718	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001371	exon55	c.T7782C	p.N2594N	.	.	.
DEFB112	245915	hgsc.bcm.edu	36	6	50124249	50124249	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001037498	exon1	c.A75G	p.I25M	.	.	.
BMP5	653	hgsc.bcm.edu	36	6	55746913	55746913	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_021073	exon4	c.C920T	p.A307V	.	.	.
MED24	9862	hgsc.bcm.edu	36	17	35441020	35441020	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001079518	exon11	c.G1033T	p.D345Y	.	.	.
TP53	7157	hgsc.bcm.edu	36	17	7517846	7517846	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon8	c.C817T	p.R273C	TP53,central_nervous_system,brain,Substitution - Missense,0	.	.
TP53	7157	hgsc.bcm.edu	36	17	7518955	7518955	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon6	c.G619A	p.D207N	.	.	.
DNAH2	146754	hgsc.bcm.edu	36	17	7643230	7643230	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020877	exon55	c.G8644A	p.V2882M	.	.	.
USP16	10600	hgsc.bcm.edu	36	21	29331548	29331548	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001001992	exon6	c.A526G	p.K176E	.	.	.
PRDM15	63977	hgsc.bcm.edu	36	21	42152356	42152356	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_022115	exon10	c.G1082A	p.R361Q	.	.	.
KIAA0556	23247	hgsc.bcm.edu	36	16	27596582	27596582	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015202	exon7	c.A572G	p.N191S	.	.	.
ADAMTS18	170692	hgsc.bcm.edu	36	16	75911283	75911283	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_199355	exon16	c.C2496T	p.Y832Y	.	.	.
ZNF423	23090	hgsc.bcm.edu	36	16	48228306	48228306	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015069	exon5	c.C2258T	p.T753M	.	.	.
C18orf34	374864	hgsc.bcm.edu	36	18	29246027	29246027	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_198995	exon3	c.C24T	p.S8S	.	.	.
SMAD2	4087	hgsc.bcm.edu	36	18	43628883	43628883	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001135937	exon7	c.A868C	p.N290H	.	.	.
SMAD4	4089	hgsc.bcm.edu	36	18	46829094	46829094	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005359	exon3	c.G290A	p.R97H	.	.	.
C3orf20	84077	hgsc.bcm.edu	36	3	14778108	14778108	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001184958	exon15	c.C2111T	p.P704L	.	.	.
PLCL2	23228	hgsc.bcm.edu	36	3	17027318	17027318	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001144382	exon3	c.T1457C	p.L486P	.	.	.
AZI2	64343	hgsc.bcm.edu	36	3	28340635	28340635	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_022461	exon8	c.G1081C	p.A361P	.	.	.
CCR1	1230	hgsc.bcm.edu	36	3	46220698	46220698	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001295	exon2	c.G111A	p.L37L	.	.	.
TWF2	11344	hgsc.bcm.edu	36	3	52244134	52244134	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_007284	exon2	c.C54T	p.A18A	.	.	.
CASC1	55259	hgsc.bcm.edu	36	12	25202752	25202752	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001082972	exon4	c.T293C	p.L98S	.	.	.
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004985	exon2	c.G35T	p.G12V	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.
KRT85	3891	hgsc.bcm.edu	36	12	51045107	51045107	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002283	exon2	c.C535A	p.L179M	.	.	.
FAM71C	196472	hgsc.bcm.edu	36	12	98566515	98566515	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_153364	exon1	c.G432A	p.T144T	.	.	.
SIN3A	25942	hgsc.bcm.edu	36	15	73493695	73493695	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001145358	exon4	c.C377T	p.A126V	.	.	.
C15orf2	23742	hgsc.bcm.edu	36	15	22472877	22472877	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018958	exon1	c.C770T	p.P257L	.	.	.
NDST4	64579	hgsc.bcm.edu	36	4	115986484	115986484	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_022569	exon10	c.G2059A	p.A687T	.	.	.
PHF17	79960	hgsc.bcm.edu	36	4	129996331	129996331	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_199320	exon7	c.G793T	p.G265C	.	.	.
RWDD4A	201965	hgsc.bcm.edu	36	4	184814054	184814054	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152682	exon2	c.T79G	p.L27V	.	.	.
RGAG1	57529	hgsc.bcm.edu	36	X	109581290	109581290	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020769	exon3	c.G789A	p.T263T	.	.	.
CDR1	1038	hgsc.bcm.edu	36	X	139693527	139693527	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004065	exon1	c.G671A	p.R224H	.	.	.
AFF2	2334	hgsc.bcm.edu	36	X	147551151	147551151	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002025	exon3	c.G211T	p.V71F	.	.	.
PPEF1	5475	hgsc.bcm.edu	36	X	18752080	18752080	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152226	exon16	c.C1434T	p.Y478Y	.	.	.
MAP3K15	389840	hgsc.bcm.edu	36	X	19297227	19297227	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001001671	exon25	c.G3432A	p.E1144E	.	.	.
MXRA5	25878	hgsc.bcm.edu	36	X	3238257	3238257	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015419	exon7	c.G7987A	p.G2663R	.	.	.
PCTK1	5127	hgsc.bcm.edu	36	X	46971378	46971378	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006201	exon12	c.G1177A	p.E393K	.	.	.
GAGE12J	729396	hgsc.bcm.edu	36	X	49066699	49066699	+	Missense_Mutation	SNP	G	G	A	rs7064530	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001098406	exon2	c.G83A	p.R28Q	.	.	.
LRP1B	53353	hgsc.bcm.edu	36	2	140916638	140916638	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018557	exon66	c.A10319C	p.Y3440S	.	.	.
ACVR1	90	hgsc.bcm.edu	36	2	158330723	158330723	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001111067	exon8	c.A1022T	p.N341I	.	.	.
ACVR1	90	hgsc.bcm.edu	36	2	158330876	158330876	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001111067	exon8	c.C869T	p.S290L	.	.	.
TTN	7273	hgsc.bcm.edu	36	2	179349846	179349846	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_133379	exon28	c.C4990T	p.R1664W	TTN,ovary,NS,Substitution - Missense,+1	.	.
NRP2	8828	hgsc.bcm.edu	36	2	206270531	206270531	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_201266	exon2	c.G92A	p.R31H	.	.	.
PTH2R	5746	hgsc.bcm.edu	36	2	209066273	209066273	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005048	exon13	c.C1297A	p.L433I	.	.	.
EPHA4	2043	hgsc.bcm.edu	36	2	221999463	221999463	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004438	exon16	c.T2811C	p.Y937Y	.	.	.
ADAM17	6868	hgsc.bcm.edu	36	2	9567598	9567598	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003183	exon11	c.G1305A	p.M435I	.	.	.
LRRTM1	347730	hgsc.bcm.edu	36	2	80383897	80383897	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_178839	exon2	c.C559A	p.L187I	.	.	.
KIAA1958	158405	hgsc.bcm.edu	36	9	114461826	114461826	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_133465	exon4	c.C1807T	p.R603W	.	.	.
GAPVD1	26130	hgsc.bcm.edu	36	9	127109860	127109860	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015635	exon6	c.T1321C	p.L441L	.	.	.
TUBA3C	7278	hgsc.bcm.edu	36	13	18650429	18650429	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006001	exon3	c.G332T	p.G111V	.	.	.
CTNNA1	1495	hgsc.bcm.edu	36	5	138191218	138191218	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001903	exon7	c.C974T	p.T325M	.	.	.