Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
TRIP6	7205	hgsc.bcm.edu	36	7	100307155	100307155	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003302	exon7	c.C1054T	p.R352W	.	.	.
STK31	56164	hgsc.bcm.edu	36	7	23792991	23792991	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001122833	exon20	c.A2341T	p.M781L	.	.	.
C20orf186	149954	hgsc.bcm.edu	36	20	31137540	31137540	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_182519	exon5	c.C835T	p.R279W	.	.	.
SLC23A2	9962	hgsc.bcm.edu	36	20	4814479	4814479	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_203327	exon7	c.T559C	p.C187R	.	.	.
SLC8A3	6547	hgsc.bcm.edu	36	14	69703416	69703416	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_033262	exon2	c.C1477A	p.Q493K	.	.	.
SEZ6L	23544	hgsc.bcm.edu	36	22	25018787	25018787	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001184776	exon2	c.G510A	p.P170P	.	.	.
SIN3B	23309	hgsc.bcm.edu	36	19	16803330	16803330	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015260	exon3	c.C253T	p.R85C	.	.	.
LENG8	114823	hgsc.bcm.edu	36	19	59658003	59658003	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_052925	exon7	c.C741A	p.T247T	.	.	.
EXTL3	2137	hgsc.bcm.edu	36	8	28630197	28630197	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001440	exon3	c.C702T	p.I234I	.	.	.
UBE4B	10277	hgsc.bcm.edu	36	1	10115095	10115095	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001105562	exon15	c.G1993A	p.V665I	.	.	.
SYT6	148281	hgsc.bcm.edu	36	1	114481783	114481783	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_205848	exon3	c.C673T	p.R225C	.	.	.
SPEN	23013	hgsc.bcm.edu	36	1	16133027	16133027	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015001	exon11	c.C7705T	p.H2569Y	.	.	.
DISP1	84976	hgsc.bcm.edu	36	1	221244597	221244597	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_032890	exon8	c.G3235A	p.V1079M	.	.	.
CSMD2	114784	hgsc.bcm.edu	36	1	33937012	33937012	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_052896	exon24	c.C3733T	p.R1245W	.	.	.
ATM	472	hgsc.bcm.edu	36	11	107691967	107691967	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000051	exon42	c.G6115A	p.E2039K	.	.	.
VWA5A	4013	hgsc.bcm.edu	36	11	123513128	123513128	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014622	exon14	c.G1822A	p.V608I	.	.	.
NTM	50863	hgsc.bcm.edu	36	11	131710158	131710158	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001144058	exon8	c.G976A	p.A326T	.	.	.
LDHC	3948	hgsc.bcm.edu	36	11	18407938	18407938	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002301	exon4	c.C323A	p.A108D	.	.	.
SERPING1	710	hgsc.bcm.edu	36	11	57130078	57130078	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000062	exon5	c.C705A	p.T235T	.	.	.
UTRN	7402	hgsc.bcm.edu	36	6	144842758	144842758	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_007124	exon25	c.G3454T	p.D1152Y	.	.	.
SYNE1	23345	hgsc.bcm.edu	36	6	152686463	152686463	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_033071	exon81	c.C15547T	p.H5183Y	.	.	.
SLC22A1	6580	hgsc.bcm.edu	36	6	160497056	160497056	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003057	exon10	c.G1558A	p.A520T	.	.	.
GABRR1	2569	hgsc.bcm.edu	36	6	89946907	89946907	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002042	exon9	c.C969A	p.T323T	.	.	.
DNAH9	1770	hgsc.bcm.edu	36	17	11523838	11523838	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001372	exon18	c.C3393T	p.S1131S	.	.	.
TEX2	55852	hgsc.bcm.edu	36	17	59619382	59619382	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018469	exon5	c.G2323A	p.V775M	.	.	.
EIF4A3	9775	hgsc.bcm.edu	36	17	75729719	75729719	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014740	exon4	c.C366T	p.I122I	.	.	.
ADAMTS5	11096	hgsc.bcm.edu	36	21	27218559	27218559	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_007038	exon8	c.C2477T	p.T826M	.	.	.
ADAMTS1	9510	hgsc.bcm.edu	36	21	27132096	27132096	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006988	exon9	c.C2577A	p.V859V	.	.	.
SMAD4	4089	hgsc.bcm.edu	36	18	46845904	46845904	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005359	exon9	c.T1069C	p.S357P	.	.	.
GTF2E1	2960	hgsc.bcm.edu	36	3	121982921	121982921	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005513	exon5	c.C1234T	p.P412S	.	.	.
DNAJC13	23317	hgsc.bcm.edu	36	3	133718282	133718282	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015268	exon48	c.C5605T	p.P1869S	.	.	.
STAG1	10274	hgsc.bcm.edu	36	3	137666443	137666443	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005862	exon13	c.C1283T	p.A428V	.	.	.
SERPINI2	5276	hgsc.bcm.edu	36	3	168653437	168653437	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006217	exon6	c.C945T	p.C315C	.	.	.
EPHA3	2042	hgsc.bcm.edu	36	3	89473908	89473908	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005233	exon5	c.C1284T	p.V428V	.	.	.
SOX5	6660	hgsc.bcm.edu	36	12	23778903	23778903	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152989	exon9	c.G753T	p.L251F	.	.	.
KRAS	3845	hgsc.bcm.edu	36	12	25289552	25289552	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004985	exon2	c.G34T	p.G12C	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,+1	.	.
R3HDM2	22864	hgsc.bcm.edu	36	12	55938116	55938116	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014925	exon19	c.C2331T	p.S777S	.	.	.
BTBD1	53339	hgsc.bcm.edu	36	15	81501643	81501643	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_025238	exon4	c.A703T	p.I235F	.	.	.
BANK1	55024	hgsc.bcm.edu	36	4	103170212	103170212	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_017935	exon10	c.A1667T	p.D556V	.	.	.
GALNT7	51809	hgsc.bcm.edu	36	4	174471786	174471786	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_017423	exon9	c.C1492T	p.L498L	.	.	.
CYTL1	54360	hgsc.bcm.edu	36	4	5067804	5067804	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018659	exon4	c.C386T	p.T129M	.	.	.
RUFY3	22902	hgsc.bcm.edu	36	4	71879379	71879379	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001037442	exon14	c.C1461A	p.N487K	.	.	.
AFAP1	60312	hgsc.bcm.edu	36	4	7831453	7831453	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001134647	exon14	c.G1833A	p.G611G	.	.	.
CXorf61	203413	hgsc.bcm.edu	36	X	115507098	115507098	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001017978	exon2	c.C180T	p.Y60Y	.	.	.
RAB33A	9363	hgsc.bcm.edu	36	X	129146276	129146276	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004794	exon2	c.G595T	p.A199S	.	.	.
CXCR7	57007	hgsc.bcm.edu	36	2	237154123	237154123	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020311	exon2	c.G276T	p.W92C	.	.	.
COL6A3	1293	hgsc.bcm.edu	36	2	237918000	237918000	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_057166	exon33	c.C5579T	p.S1860L	.	.	.
GALNT14	79623	hgsc.bcm.edu	36	2	31032035	31032035	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_024572	exon6	c.G607A	p.E203K	.	.	.
ABCG8	64241	hgsc.bcm.edu	36	2	43932394	43932394	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_022437	exon4	c.C490T	p.R164X	.	.	.
KLRAQ1	129285	hgsc.bcm.edu	36	2	48560648	48560648	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001135629	exon13	c.A1307T	p.D436V	.	.	.
MGAT4A	11320	hgsc.bcm.edu	36	2	98645970	98645970	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_012214	exon5	c.G508T	p.D170Y	.	.	.
PTGR1	22949	hgsc.bcm.edu	36	9	113388203	113388203	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001146109	exon5	c.G273A	p.W91X	.	.	.
TRIM32	22954	hgsc.bcm.edu	36	9	118500989	118500989	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001099679	exon2	c.G1147T	p.G383C	.	.	.
PCCA	5095	hgsc.bcm.edu	36	13	99978007	99978007	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001178004	exon22	c.G1977A	p.T659T	.	.	.
NRAP	4892	hgsc.bcm.edu	36	10	115381306	115381306	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_198060	exon18	c.C1794T	p.A598A	.	.	.
PAM	5066	hgsc.bcm.edu	36	5	102371165	102371165	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_138822	exon19	c.G2120A	p.R707Q	.	.	.
APC	324	hgsc.bcm.edu	36	5	112203420	112203420	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127511	exon14	c.C4176A	p.C1392X	APC,large_intestine,NS,Substitution - Nonsense,0	.	.
DNAH5	1767	hgsc.bcm.edu	36	5	13754414	13754414	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001369	exon77	c.A13470G	p.G4490G	.	.	.
UGT3A1	133688	hgsc.bcm.edu	36	5	35990068	35990068	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152404	exon7	c.A1565C	p.K522T	.	.	.
MGC42105	167359	hgsc.bcm.edu	36	5	43281699	43281699	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_153361	exon2	c.G65A	p.R22H	.	.	.