Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
SAMD9L	219285	hgsc.bcm.edu	36	7	92599057	92599057	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152703	exon5	c.T4164A	p.I1388I	.	.	.
COL1A2	1278	hgsc.bcm.edu	36	7	93893674	93893674	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000089	exon46	c.C3001T	p.P1001S	.	.	.
TPX2	22974	hgsc.bcm.edu	36	20	29844271	29844271	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_012112	exon13	c.C1486T	p.R496X	.	.	.
ZBP1	81030	hgsc.bcm.edu	36	20	55618647	55618647	+	Missense_Mutation	SNP	C	C	A	rs61749015	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001160417	exon7	c.G1054T	p.A352S	.	.	.
C20orf85	128602	hgsc.bcm.edu	36	20	56169215	56169215	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_178456	exon4	c.C345T	p.D115D	.	.	.
SMARCA4	6597	hgsc.bcm.edu	36	19	10984782	10984782	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003072	exon16	c.C2432G	p.P811R	.	.	.
ZNF333	84449	hgsc.bcm.edu	36	19	14690212	14690212	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_032433	exon12	c.A1073C	p.K358T	.	.	.
LSM14A	26065	hgsc.bcm.edu	36	19	39402289	39402289	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001114093	exon7	c.G935A	p.R312K	.	.	.
RYR1	6261	hgsc.bcm.edu	36	19	43650125	43650125	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001042723	exon25	c.C3214T	p.R1072C	.	.	.
FBXO27	126433	hgsc.bcm.edu	36	19	44207907	44207907	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_178820	exon6	c.G836A	p.R279Q	.	.	.
ZNF536	9745	hgsc.bcm.edu	36	19	35731664	35731664	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014717	exon4	c.G3298A	p.V1100M	.	.	.
GTF2F1	2962	hgsc.bcm.edu	36	19	6340580	6340580	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002096	exon4	c.G201A	p.A67A	.	.	.
ENPP2	5168	hgsc.bcm.edu	36	8	120650662	120650662	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001130863	exon22	c.C2122G	p.P708A	.	.	.
OR6N1	128372	hgsc.bcm.edu	36	1	157002521	157002521	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001005185	exon1	c.G576A	p.T192T	.	.	.
SMG7	9887	hgsc.bcm.edu	36	1	181780694	181780694	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001174061	exon15	c.C1868T	p.P623L	.	.	.
USH2A	7399	hgsc.bcm.edu	36	1	214057073	214057073	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_206933	exon48	c.C9459T	p.C3153C	.	.	.
SNHG3-RCC1	751867	hgsc.bcm.edu	36	1	28731274	28731274	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001269	exon4	c.A266G	p.Y89C	.	.	.
PTPRF	5792	hgsc.bcm.edu	36	1	43791755	43791755	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_130440	exon4	c.C97T	p.P33S	.	.	.
GUCY1A2	2977	hgsc.bcm.edu	36	11	106063655	106063655	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000855	exon8	c.C2029T	p.R677W	.	.	.
LUZP2	338645	hgsc.bcm.edu	36	11	24716398	24716398	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001009909	exon4	c.G307T	p.E103X	.	.	.
CD44	960	hgsc.bcm.edu	36	11	35154765	35154765	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001001389	exon2	c.T135C	p.S45S	.	.	.
KPNA5	3841	hgsc.bcm.edu	36	6	117154442	117154442	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002269	exon12	c.C1217G	p.T406S	.	.	.
SUPT6H	6830	hgsc.bcm.edu	36	17	24034875	24034875	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003170	exon17	c.C2143T	p.R715W	.	.	.
ACACA	31	hgsc.bcm.edu	36	17	32761375	32761375	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_198834	exon3	c.A189G	p.E63E	.	.	.
DHX8	1659	hgsc.bcm.edu	36	17	38939965	38939965	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004941	exon13	c.C1797T	p.T599T	.	.	.
RNF157	114804	hgsc.bcm.edu	36	17	71673218	71673218	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_052916	exon7	c.A632G	p.Y211C	.	.	.
TP53	7157	hgsc.bcm.edu	36	17	7517747	7517747	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon8	c.C916T	p.R306X	TP53,large_intestine,rectum,Substitution - Nonsense,0	.	.
CYYR1	116159	hgsc.bcm.edu	36	21	26774517	26774517	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_052954	exon3	c.G279A	p.A93A	.	.	.
SFRS15	57466	hgsc.bcm.edu	36	21	31995180	31995180	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001145444	exon6	c.A731T	p.K244M	.	.	.
C21orf66	94104	hgsc.bcm.edu	36	21	33056443	33056443	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_013329	exon4	c.C706T	p.R236X	.	.	.
IGSF6	10261	hgsc.bcm.edu	36	16	21563121	21563121	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005849	exon3	c.C525T	p.L175L	.	.	.
HYDIN	54768	hgsc.bcm.edu	36	16	69658754	69658754	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_032821	exon15	c.C2015A	p.A672E	.	.	.
LAMA1	284217	hgsc.bcm.edu	36	18	6976298	6976298	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005559	exon37	c.G5217A	p.P1739P	.	.	.
UBA5	79876	hgsc.bcm.edu	36	3	133876795	133876795	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_198329	exon9	c.T658A	p.F220I	.	.	.
NCBP2	22916	hgsc.bcm.edu	36	3	198148881	198148881	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_007362	exon3	c.G296A	p.R99Q	.	.	.
TGM4	7047	hgsc.bcm.edu	36	3	44904236	44904236	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003241	exon3	c.C245T	p.T82M	.	.	.
RASAL1	8437	hgsc.bcm.edu	36	12	112030312	112030312	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004658	exon15	c.G1473A	p.A491A	.	.	.
LRP6	4040	hgsc.bcm.edu	36	12	12191675	12191675	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002336	exon15	c.T3289C	p.F1097L	.	.	.
IFLTD1	160492	hgsc.bcm.edu	36	12	25563056	25563056	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001145727	exon6	c.G877A	p.A293T	.	.	.
NIPA2	81614	hgsc.bcm.edu	36	15	20558177	20558177	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001008860	exon7	c.G568A	p.A190T	.	.	.
FBXW7	55294	hgsc.bcm.edu	36	4	153463542	153463542	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018315	exon11	c.C1825T	p.R609W	FBXW7,large_intestine,colon,Substitution - Missense,0	.	.
MAP2	4133	hgsc.bcm.edu	36	2	210268154	210268154	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002374	exon7	c.A3015G	p.S1005S	.	.	.
ABCA12	26154	hgsc.bcm.edu	36	2	215528190	215528190	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_173076	exon43	c.A6374T	p.K2125M	.	.	.
CAD	790	hgsc.bcm.edu	36	2	27302203	27302203	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004341	exon12	c.G1747A	p.A583T	.	.	.
CCDC88A	55704	hgsc.bcm.edu	36	2	55469524	55469524	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001135597	exon3	c.A167G	p.N56S	.	.	.
SPRED2	200734	hgsc.bcm.edu	36	2	65394332	65394332	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_181784	exon6	c.C1064T	p.S355L	.	.	.
GLIS3	169792	hgsc.bcm.edu	36	9	4108717	4108717	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152629	exon3	c.T296A	p.L99H	.	.	.
TUBA3C	7278	hgsc.bcm.edu	36	13	18646092	18646092	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006001	exon5	c.C1264T	p.R422C	.	.	.
TECTB	6975	hgsc.bcm.edu	36	10	114053030	114053030	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_058222	exon10	c.C960T	p.I320I	.	.	.
PGBD3	267004	hgsc.bcm.edu	36	10	50393614	50393614	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_170753	exon2	c.G1553A	p.R518H	.	.	.
KCNMA1	3778	hgsc.bcm.edu	36	10	78374725	78374725	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001161353	exon23	c.C2663T	p.T888M	.	.	.
CD180	4064	hgsc.bcm.edu	36	5	66515646	66515646	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005582	exon3	c.G781A	p.E261K	.	.	.