Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
FAM179B	23116	hgsc.bcm.edu	36	14	44545193	44545193	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015091	exon5	c.C2877T	p.F959F	.	.	.
CRYBA4	1413	hgsc.bcm.edu	36	22	25349247	25349247	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001886	exon3	c.C89T	p.T30M	.	.	.
SAMM50	25813	hgsc.bcm.edu	36	22	42703339	42703339	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015380	exon8	c.G720A	p.R240R	.	.	.
MAN2B1	4125	hgsc.bcm.edu	36	19	12621989	12621989	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000528	exon17	c.C2094A	p.S698S	.	.	.
GNA11	2767	hgsc.bcm.edu	36	19	3061206	3061206	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002067	exon2	c.G196A	p.G66S	.	.	.
BLVRB	645	hgsc.bcm.edu	36	19	45656200	45656200	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000713	exon2	c.G172A	p.A58T	.	.	.
NOVA2	4858	hgsc.bcm.edu	36	19	51148903	51148903	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002516	exon3	c.C371T	p.T124M	.	.	.
FPR3	2359	hgsc.bcm.edu	36	19	57019756	57019756	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002030	exon2	c.C943T	p.R315C	.	.	.
ADAMTS10	81794	hgsc.bcm.edu	36	19	8567081	8567081	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_030957	exon11	c.G1213T	p.V405L	.	.	.
FER1L6	654463	hgsc.bcm.edu	36	8	125142072	125142072	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001039112	exon24	c.G3088A	p.V1030M	.	.	.
CA8	767	hgsc.bcm.edu	36	8	61341116	61341116	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004056	exon3	c.C339T	p.Y113Y	.	.	.
ARFGEF1	10565	hgsc.bcm.edu	36	8	68366693	68366693	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006421	exon6	c.G859A	p.D287N	.	.	.
PTK2	5747	hgsc.bcm.edu	36	8	141925943	141925944	+	Frame_Shift_Del	DEL	AT	AT	-	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	AT	AT	AT	-	AT	AT	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001199649	exon6	c.466_467del	p.156_156del	.	.	.
GSTM4	2948	hgsc.bcm.edu	36	1	110003032	110003032	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_147148	exon6	c.G434A	p.R145K	.	.	.
MAGI3	260425	hgsc.bcm.edu	36	1	113990739	113990739	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152900	exon12	c.G2107A	p.D703N	.	.	.
USH2A	7399	hgsc.bcm.edu	36	1	214057072	214057072	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_206933	exon48	c.G9460A	p.A3154T	.	.	.
SLC35F3	148641	hgsc.bcm.edu	36	1	232519055	232519055	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_173508	exon5	c.G913A	p.A305T	.	.	.
LYST	1130	hgsc.bcm.edu	36	1	233950751	233950751	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000081	exon40	c.G9393C	p.L3131L	.	.	.
DSCAML1	57453	hgsc.bcm.edu	36	11	116880906	116880906	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020693	exon10	c.C2305T	p.L769F	.	.	.
OR10G7	390265	hgsc.bcm.edu	36	11	123414507	123414507	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001004463	exon1	c.C412T	p.R138C	.	.	.
KCNE3	10008	hgsc.bcm.edu	36	11	73846116	73846116	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005472	exon3	c.G141A	p.R47R	.	.	.
ZNF451	26036	hgsc.bcm.edu	36	6	57101496	57101496	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015555	exon5	c.A323T	p.D108V	.	.	.
LCA5	167691	hgsc.bcm.edu	36	6	80255611	80255611	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_181714	exon8	c.G1140T	p.G380G	.	.	.
BAI3	577	hgsc.bcm.edu	36	6	69406000	69406000	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001704	exon3	c.C712G	p.Q238E	.	.	.
PRKCA	5578	hgsc.bcm.edu	36	17	61922829	61922829	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002737	exon3	c.C254A	p.S85Y	.	.	.
TP53	7157	hgsc.bcm.edu	36	17	7520038	7520038	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon4	c.C374T	p.T125M	.	.	.
CNTROB	116840	hgsc.bcm.edu	36	17	7788526	7788526	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_053051	exon12	c.C1579T	p.R527W	.	.	.
GUCY2D	3000	hgsc.bcm.edu	36	17	7850421	7850421	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000180	exon4	c.G1042A	p.G348S	.	.	.
GUCY2D	3000	hgsc.bcm.edu	36	17	7851530	7851530	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000180	exon6	c.G1525A	p.D509N	.	.	.
KIAA0556	23247	hgsc.bcm.edu	36	16	27690458	27690458	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015202	exon22	c.G4182A	p.P1394P	.	.	.
CCBE1	147372	hgsc.bcm.edu	36	18	55273129	55273129	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133459	exon6	c.A588T	p.G196G	.	.	.
C3orf30	152405	hgsc.bcm.edu	36	3	120348437	120348437	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152539	exon1	c.T711A	p.S237R	.	.	.
KALRN	8997	hgsc.bcm.edu	36	3	125897770	125897770	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001024660	exon54	c.G7677A	p.T2559T	.	.	.
MLF1	4291	hgsc.bcm.edu	36	3	159803406	159803406	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001195434	exon8	c.C655T	p.R219X	.	.	.
LRRN1	57633	hgsc.bcm.edu	36	3	3861686	3861686	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020873	exon2	c.C361T	p.L121F	.	.	.
ANAPC5	51433	hgsc.bcm.edu	36	12	120257811	120257811	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001137559	exon7	c.C561G	p.A187A	.	.	.
KRT78	196374	hgsc.bcm.edu	36	12	51519884	51519884	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_173352	exon7	c.C1199T	p.T400M	.	.	.
NCKAP1L	3071	hgsc.bcm.edu	36	12	53211858	53211858	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001184976	exon25	c.C2613T	p.A871A	.	.	.
DNAJC14	85406	hgsc.bcm.edu	36	12	54508102	54508102	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_032364	exon2	c.C608T	p.T203M	.	.	.
HERC2	8924	hgsc.bcm.edu	36	15	26050964	26050964	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004667	exon81	c.C12447A	p.A4149A	.	.	.
ALPK1	80216	hgsc.bcm.edu	36	4	113552604	113552604	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_025144	exon5	c.G449A	p.R150H	.	.	.
CAMK2D	817	hgsc.bcm.edu	36	4	114678027	114678027	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_172115	exon7	c.A436G	p.S146G	.	.	.
GPR125	166647	hgsc.bcm.edu	36	4	22055794	22055794	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_145290	exon6	c.A606G	p.V202V	.	.	.
TMPRSS11A	339967	hgsc.bcm.edu	36	4	68463022	68463022	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_182606	exon9	c.G983A	p.R328Q	.	.	.
ZMAT1	84460	hgsc.bcm.edu	36	X	101025481	101025481	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001011657	exon7	c.A1574G	p.N525S	.	.	.
DOCK11	139818	hgsc.bcm.edu	36	X	117642597	117642597	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_144658	exon32	c.G3539A	p.R1180Q	.	.	.
FRMPD4	9758	hgsc.bcm.edu	36	X	12646256	12646256	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014728	exon16	c.A3390G	p.E1130E	.	.	.
AFF2	2334	hgsc.bcm.edu	36	X	147845480	147845480	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002025	exon11	c.G2205A	p.P735P	.	.	.
SULT1C4	27233	hgsc.bcm.edu	36	2	108364734	108364734	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006588	exon2	c.G254T	p.R85L	.	.	.
RANBP2	5903	hgsc.bcm.edu	36	2	108746279	108746279	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006267	exon20	c.C2852T	p.T951M	.	.	.
SAP130	79595	hgsc.bcm.edu	36	2	128416125	128416125	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001145928	exon21	c.C3177T	p.D1059D	.	.	.
IFIH1	64135	hgsc.bcm.edu	36	2	162832311	162832311	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_022168	exon15	c.T2822C	p.V941A	.	.	.
NRXN1	9378	hgsc.bcm.edu	36	2	50172125	50172125	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_138735	exon3	c.A453T	p.K151N	.	.	.
INVS	27130	hgsc.bcm.edu	36	9	102094667	102094667	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014425	exon14	c.G2307A	p.P769P	.	.	.
DENND1A	57706	hgsc.bcm.edu	36	9	125359679	125359679	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024820	exon13	c.A984G	p.K328K	.	.	.
PHYHD1	254295	hgsc.bcm.edu	36	9	130742503	130742503	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_174933	exon9	c.G470A	p.R157Q	.	.	.
DBH	1621	hgsc.bcm.edu	36	9	135497191	135497191	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000787	exon3	c.G528A	p.P176P	.	.	.
CCL27	10850	hgsc.bcm.edu	36	9	34652282	34652282	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006664	exon2	c.G202A	p.V68M	.	.	.
LHX3	8022	hgsc.bcm.edu	36	9	138232354	138232354	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_178138	exon2	c.G146A	p.R49H	.	.	.
CUBN	8029	hgsc.bcm.edu	36	10	17191722	17191722	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_001081	exon10	c.G1034C	p.R345T	.	.	.
SGMS1	259230	hgsc.bcm.edu	36	10	51773566	51773566	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_147156	exon7	c.C315T	p.N105N	.	.	.
NPL2	112817	hgsc.bcm.edu	36	10	99349487	99349487	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138413	exon4	c.G529T	p.D177Y	.	.	.
DPYSL4	10570	hgsc.bcm.edu	36	10	133865474	133865474	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006426	exon11	c.C1145T	p.A382V	.	.	.
CTNND2	1501	hgsc.bcm.edu	36	5	11170585	11170585	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001332	exon13	c.G2254C	p.G752R	.	.	.
PCDHAC1	56135	hgsc.bcm.edu	36	5	140288804	140288804	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_031882	exon1	c.G2143A	p.A715T	.	.	.
ABLIM3	22885	hgsc.bcm.edu	36	5	148610245	148610245	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014945	exon20	c.G1772T	p.R591I	.	.	.
MIER3	166968	hgsc.bcm.edu	36	5	56269165	56269165	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152622	exon5	c.C433T	p.R145X	.	.	.
CHD1	1105	hgsc.bcm.edu	36	5	98240128	98240128	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001270	exon23	c.G3272A	p.R1091K	.	.	.