Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
JPH1	56704	hgsc.bcm.edu	36	8	75319834	75319835	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020647	exon4	c.1389_1390insC	p.P463fs	.	.	.
PGLYRP1	8993	hgsc.bcm.edu	36	19	51214457	51214458	+	In_Frame_Ins	INS	-	-	AGT	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005091	exon3	c.470_471insACT	p.A157delinsDS	.	.	.
PTPN3	5774	hgsc.bcm.edu	36	9	111193645	111193646	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002829	exon20	c.1971_1972insA	p.K657fs	.	.	.
RANBP6	26953	hgsc.bcm.edu	36	9	6004442	6004443	+	Frame_Shift_Ins	INS	-	-	CAGTT	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012416	exon1	c.1166_1167insAACTG	p.A389fs	.	.	.
RELN	5649	hgsc.bcm.edu	36	7	102942980	102942980	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005045	exon50	c.T8007C	p.V2669V	.	.	.
PUS7	54517	hgsc.bcm.edu	36	7	104922924	104922924	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_019042	exon6	c.A743T	p.H248L	.	.	.
ING3	54556	hgsc.bcm.edu	36	7	120378497	120378497	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_019071	exon2	c.A72T	p.E24D	.	.	.
C7orf58	79974	hgsc.bcm.edu	36	7	120693570	120693570	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024913	exon19	c.A2364T	p.E788D	.	.	.
WNT16	51384	hgsc.bcm.edu	36	7	120766491	120766491	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016087	exon4	c.T924C	p.D308D	.	.	.
SLC13A1	6561	hgsc.bcm.edu	36	7	122574548	122574548	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022444	exon7	c.A713C	p.K238T	.	.	.
CPA5	93979	hgsc.bcm.edu	36	7	129786714	129786714	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127441	exon7	c.G382C	p.E128Q	.	.	.
EXOC4	60412	hgsc.bcm.edu	36	7	132624390	132624390	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001037126	exon3	c.C451G	p.L151V	.	.	.
BRAF	673	hgsc.bcm.edu	36	7	140154257	140154257	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004333	exon5	c.A683T	p.E228V	.	.	.
TRPV6	55503	hgsc.bcm.edu	36	7	142293274	142293274	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018646	exon1	c.A110G	p.N37S	.	.	.
ZNF212	7988	hgsc.bcm.edu	36	7	148582275	148582275	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012256	exon5	c.T1324A	p.L442M	.	.	.
KCNH2	3757	hgsc.bcm.edu	36	7	150279703	150279703	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_172057	exon3	c.A691G	p.I231V	.	.	.
PKD1L1	168507	hgsc.bcm.edu	36	7	47911417	47911417	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138295	exon11	c.T1553G	p.F518C	.	.	.
ZNF107	51427	hgsc.bcm.edu	36	7	63805705	63805705	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001013746	exon5	c.G1588A	p.G530S	.	.	.
WBSCR17	64409	hgsc.bcm.edu	36	7	70768397	70768397	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022479	exon7	c.G1146T	p.K382N	.	.	.
HIP1	3092	hgsc.bcm.edu	36	7	75010152	75010152	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005338	exon28	c.C2844T	p.G948G	.	.	.
PION	54103	hgsc.bcm.edu	36	7	76822600	76822600	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017439	exon16	c.A1204G	p.K402E	.	.	.
ABCB4	5244	hgsc.bcm.edu	36	7	86917289	86917289	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018849	exon8	c.T764C	p.V255A	.	.	.
DYNC1I1	1780	hgsc.bcm.edu	36	7	95277715	95277715	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004411	exon3	c.T184C	p.L62L	.	.	.
BAIAP2L1	55971	hgsc.bcm.edu	36	7	97777783	97777783	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018842	exon9	c.T865A	p.S289T	.	.	.
EGFR	1956	hgsc.bcm.edu	36	7	55216499	55216499	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005228	exon20	c.G2303C	p.S768T	EGFR,oesophagus,middle_third,Substitution - Missense,0	.	.
PYGB	5834	hgsc.bcm.edu	36	20	25209008	25209008	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002862	exon10	c.A1199G	p.H400R	.	.	.
ASXL1	171023	hgsc.bcm.edu	36	20	30485154	30485154	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015338	exon11	c.G1492T	p.A498S	.	.	.
ERGIC3	51614	hgsc.bcm.edu	36	20	33593742	33593742	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198398	exon3	c.T226A	p.F76I	.	.	.
SRC	6714	hgsc.bcm.edu	36	20	35464354	35464354	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005417	exon12	c.G1219C	p.D407H	.	.	.
CHD6	84181	hgsc.bcm.edu	36	20	39576903	39576903	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032221	exon4	c.A657T	p.P219P	.	.	.
PIGT	51604	hgsc.bcm.edu	36	20	43487817	43487817	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001184730	exon10	c.A1368C	p.T456T	.	.	.
ZSWIM3	140831	hgsc.bcm.edu	36	20	43940146	43940146	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_080752	exon2	c.G1542T	p.W514C	.	.	.
SLC12A5	57468	hgsc.bcm.edu	36	20	44107027	44107027	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020708	exon12	c.G1410T	p.V470V	.	.	.
ZMYND8	23613	hgsc.bcm.edu	36	20	45338558	45338558	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012408	exon11	c.G1387T	p.G463C	.	.	.
KCNB1	3745	hgsc.bcm.edu	36	20	47532100	47532100	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004975	exon1	c.G325C	p.E109Q	.	.	.
CTCFL	140690	hgsc.bcm.edu	36	20	55521197	55521197	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_080618	exon8	c.T1348G	p.L450V	.	.	.
PHACTR3	116154	hgsc.bcm.edu	36	20	57781758	57781758	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_080672	exon6	c.A781T	p.M261L	.	.	.
CDH4	1002	hgsc.bcm.edu	36	20	59853226	59853226	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001794	exon5	c.G684C	p.R228R	.	.	.
C20orf54	113278	hgsc.bcm.edu	36	20	692512	692512	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033409	exon3	c.C703A	p.L235I	.	.	.
PAK7	57144	hgsc.bcm.edu	36	20	9468136	9468136	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_177990	exon10	c.C2133A	p.P711P	.	.	.
DYNC1H1	1778	hgsc.bcm.edu	36	14	101580091	101580091	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001376	exon70	c.T12640A	p.S4214T	.	.	.
SIVA1	10572	hgsc.bcm.edu	36	14	104296829	104296829	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006427	exon4	c.A490T	p.K164X	.	.	.
TTC5	91875	hgsc.bcm.edu	36	14	19827645	19827645	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138376	exon10	c.C1304G	p.S435W	.	.	.
ACIN1	22985	hgsc.bcm.edu	36	14	22618017	22618017	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001164814	exon7	c.A2033T	p.Q678L	.	.	.
LRRC16B	90668	hgsc.bcm.edu	36	14	23600067	23600067	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138360	exon26	c.A2282C	p.K761T	.	.	.
RIPK3	11035	hgsc.bcm.edu	36	14	23878317	23878317	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006871	exon3	c.T215C	p.V72A	.	.	.
SEC23A	10484	hgsc.bcm.edu	36	14	38594188	38594188	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006364	exon14	c.C1569T	p.A523A	.	.	.
LRFN5	145581	hgsc.bcm.edu	36	14	41430265	41430265	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152447	exon4	c.A1448G	p.D483G	.	.	.
LRFN5	145581	hgsc.bcm.edu	36	14	41430589	41430589	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152447	exon4	c.A1772C	p.K591T	.	.	.
C14orf106	55320	hgsc.bcm.edu	36	14	44762998	44762998	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018353	exon11	c.G2542C	p.V848L	.	.	.
SPTB	6710	hgsc.bcm.edu	36	14	64323409	64323409	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001024858	exon15	c.C3027A	p.A1009A	.	.	.
ALDH6A1	4329	hgsc.bcm.edu	36	14	73603946	73603946	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005589	exon8	c.G932T	p.G311V	.	.	.
FLRT2	23768	hgsc.bcm.edu	36	14	85157655	85157655	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013231	exon2	c.T44C	p.F15S	.	.	.
CATSPERB	79820	hgsc.bcm.edu	36	14	91125706	91125706	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024764	exon24	c.G2881A	p.D961N	.	.	.
SERPINA5	5104	hgsc.bcm.edu	36	14	94126840	94126840	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000624	exon5	c.C892A	p.Q298K	.	.	.
SERPINA3	12	hgsc.bcm.edu	36	14	94155526	94155526	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001085	exon3	c.C885T	p.T295T	.	.	.
VRK1	7443	hgsc.bcm.edu	36	14	96369607	96369607	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003384	exon2	c.A46G	p.K16E	.	.	.
SMARCB1	6598	hgsc.bcm.edu	36	22	22497452	22497452	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003073	exon7	c.T836G	p.F279C	.	.	.
AP1B1	162	hgsc.bcm.edu	36	22	28084824	28084824	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001166019	exon5	c.A416C	p.K139T	.	.	.
MORC2	22880	hgsc.bcm.edu	36	22	29658993	29658993	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014941	exon23	c.G2219A	p.R740H	.	.	.
BPIL2	254240	hgsc.bcm.edu	36	22	31163789	31163789	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_174932	exon7	c.T705G	p.S235R	.	.	.
POLDIP3	84271	hgsc.bcm.edu	36	22	41311785	41311785	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178136	exon8	c.G1135A	p.A379T	.	.	.
PI4KA	5297	hgsc.bcm.edu	36	22	19431936	19431937	+	Frame_Shift_Del	DEL	GC	GC	-	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	GC	GC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_058004	exon29	c.3123_3124del	p.1041_1042del	.	.	.
RTBDN	83546	hgsc.bcm.edu	36	19	12801629	12801629	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031429	exon3	c.G261T	p.L87L	.	.	.
MAST1	22983	hgsc.bcm.edu	36	19	12840885	12840885	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014975	exon22	c.C2779A	p.P927T	.	.	.
LPHN1	22859	hgsc.bcm.edu	36	19	14134615	14134615	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014921	exon5	c.A998T	p.E333V	.	.	.
OR10H1	26539	hgsc.bcm.edu	36	19	15779655	15779655	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013940	exon1	c.G193A	p.A65T	.	.	.
TSHZ3	57616	hgsc.bcm.edu	36	19	36461330	36461330	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020856	exon2	c.C1209A	p.A403A	.	.	.
KIAA0355	9710	hgsc.bcm.edu	36	19	39522670	39522670	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014686	exon9	c.A1420G	p.K474E	.	.	.
DMKN	93099	hgsc.bcm.edu	36	19	40683297	40683297	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033317	exon12	c.A1265T	p.K422I	.	.	.
DMKN	93099	hgsc.bcm.edu	36	19	40696010	40696010	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033317	exon1	c.G208A	p.A70T	.	.	.
ATP4A	495	hgsc.bcm.edu	36	19	40734229	40734229	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000704	exon19	c.A2845G	p.K949E	.	.	.
APLP1	333	hgsc.bcm.edu	36	19	41054016	41054016	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001024807	exon4	c.A462C	p.E154D	.	.	.
CLIP3	25999	hgsc.bcm.edu	36	19	41209393	41209393	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001199570	exon4	c.A497G	p.H166R	.	.	.
ZNF540	163255	hgsc.bcm.edu	36	19	42795431	42795431	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152606	exon5	c.G1410T	p.K470N	.	.	.
DYRK1B	9149	hgsc.bcm.edu	36	19	45010835	45010835	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006483	exon6	c.C749G	p.P250R	.	.	.
FCGBP	8857	hgsc.bcm.edu	36	19	45125812	45125812	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003890	exon2	c.A297C	p.I99I	.	.	.
AKT2	208	hgsc.bcm.edu	36	19	45431663	45431663	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001626	exon14	c.A1402T	p.T468S	.	.	.
ARHGEF1	9138	hgsc.bcm.edu	36	19	47090208	47090208	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198977	exon8	c.T634C	p.F212L	.	.	.
KCNN4	3783	hgsc.bcm.edu	36	19	48968031	48968031	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002250	exon4	c.C780A	p.T260T	.	.	.
ERCC2	2068	hgsc.bcm.edu	36	19	50547678	50547678	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000400	exon21	c.C1972T	p.R658C	.	.	.
RSHL1	81492	hgsc.bcm.edu	36	19	51010056	51010056	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030785	exon1	c.G219A	p.Q73Q	.	.	.
FKRP	79147	hgsc.bcm.edu	36	19	51951752	51951752	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024301	exon4	c.T1205A	p.F402Y	.	.	.
TULP2	7288	hgsc.bcm.edu	36	19	54076171	54076171	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003323	exon13	c.G1472A	p.G491D	.	.	.
PPFIA3	8541	hgsc.bcm.edu	36	19	54328915	54328915	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003660	exon10	c.C1212T	p.A404A	.	.	.
KLK2	3817	hgsc.bcm.edu	36	19	56069911	56069911	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001002231	exon2	c.C169A	p.P57T	KLK2,skin,NS,Substitution - Missense,0	.	.
SIGLEC12	89858	hgsc.bcm.edu	36	19	56695188	56695188	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033329	exon1	c.A252G	p.P84P	.	.	.
ZNF350	59348	hgsc.bcm.edu	36	19	57160712	57160712	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021632	exon5	c.A806C	p.K269T	.	.	.
NLRP12	91662	hgsc.bcm.edu	36	19	59004911	59004911	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144687	exon3	c.C1814T	p.T605I	.	.	.
LILRB5	10990	hgsc.bcm.edu	36	19	59452842	59452842	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001081442	exon1	c.T27C	p.I9I	.	.	.
LILRA2	11027	hgsc.bcm.edu	36	19	59778077	59778077	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001130917	exon4	c.C420A	p.T140T	.	.	.
CD70	970	hgsc.bcm.edu	36	19	6537286	6537286	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001252	exon3	c.G327C	p.Q109H	.	.	.
OLFM2	93145	hgsc.bcm.edu	36	19	9825943	9825943	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_058164	exon6	c.C1284G	p.A428A	.	.	.
ZNF77	58492	hgsc.bcm.edu	36	19	2885739	2885740	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	AG	AG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021217	exon4	c.385_386del	p.129_129del	.	.	.
UBR5	51366	hgsc.bcm.edu	36	8	103375088	103375088	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015902	exon34	c.A4510G	p.I1504V	.	.	.
CSMD3	114788	hgsc.bcm.edu	36	8	114036138	114036138	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198123	exon8	c.A1371G	p.R457R	.	.	.
TAF2	6873	hgsc.bcm.edu	36	8	120813377	120813377	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003184	exon26	c.A3568T	p.R1190W	.	.	.
DEPDC6	64798	hgsc.bcm.edu	36	8	121009992	121009992	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022783	exon2	c.T294G	p.I98M	.	.	.
COL14A1	7373	hgsc.bcm.edu	36	8	121450768	121450768	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021110	exon47	c.G5174A	p.R1725Q	.	.	.
TG	7038	hgsc.bcm.edu	36	8	133964315	133964315	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003235	exon8	c.A964T	p.N322Y	.	.	.
COL22A1	169044	hgsc.bcm.edu	36	8	139670827	139670827	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152888	exon65	c.C4732T	p.P1578S	.	.	.
ZNF623	9831	hgsc.bcm.edu	36	8	144803315	144803315	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014789	exon1	c.C130T	p.P44S	.	.	.
ZNF16	7564	hgsc.bcm.edu	36	8	146127161	146127161	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006958	exon3	c.T1816C	p.C606R	.	.	.
ATP6V1B2	526	hgsc.bcm.edu	36	8	20120050	20120050	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001693	exon13	c.T1373C	p.F458S	.	.	.
ADHFE1	137872	hgsc.bcm.edu	36	8	67535119	67535119	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144650	exon13	c.G1185T	p.R395S	.	.	.
PRDM14	63978	hgsc.bcm.edu	36	8	71133514	71133514	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024504	exon6	c.G1301C	p.C434S	.	.	.
LY96	23643	hgsc.bcm.edu	36	8	75084899	75084899	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015364	exon3	c.T312C	p.F104F	.	.	.
AGL	178	hgsc.bcm.edu	36	1	100122299	100122299	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000645	exon16	c.A2293C	p.I765L	.	.	.
KIAA1324	57535	hgsc.bcm.edu	36	1	109544943	109544943	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020775	exon21	c.A2871T	p.A957A	.	.	.
SORT1	6272	hgsc.bcm.edu	36	1	109671673	109671673	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002959	exon12	c.C1445A	p.P482Q	.	.	.
HBXIP	10542	hgsc.bcm.edu	36	1	110748139	110748139	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006402	exon3	c.T386A	p.V129D	.	.	.
TRIM33	51592	hgsc.bcm.edu	36	1	114768854	114768854	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015906	exon10	c.A1742C	p.N581T	.	.	.
MAN1A2	10905	hgsc.bcm.edu	36	1	117841110	117841110	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006699	exon10	c.A1487C	p.E496A	.	.	.
PBXIP1	57326	hgsc.bcm.edu	36	1	153184882	153184882	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020524	exon10	c.A1892T	p.Q631L	.	.	.
ASH1L	55870	hgsc.bcm.edu	36	1	153675152	153675152	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018489	exon5	c.A5418T	p.Q1806H	.	.	.
ASH1L	55870	hgsc.bcm.edu	36	1	153757716	153757716	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018489	exon2	c.T219G	p.F73L	.	.	.
KIAA0907	22889	hgsc.bcm.edu	36	1	154163160	154163160	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014949	exon6	c.C612G	p.V204V	.	.	.
BCAN	63827	hgsc.bcm.edu	36	1	154887966	154887966	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021948	exon7	c.C1158T	p.T386T	.	.	.
BCAN	63827	hgsc.bcm.edu	36	1	154888090	154888090	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021948	exon7	c.C1282T	p.P428S	.	.	.
FCRL4	83417	hgsc.bcm.edu	36	1	155823812	155823812	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031282	exon5	c.C725T	p.T242M	.	.	.
FCRL1	115350	hgsc.bcm.edu	36	1	156038440	156038440	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001159398	exon5	c.G775A	p.G259R	.	.	.
OR10T2	128360	hgsc.bcm.edu	36	1	156635346	156635346	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001004475	exon1	c.T535G	p.F179V	.	.	.
CASP9	842	hgsc.bcm.edu	36	1	15693012	15693012	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032996	exon8	c.T871A	p.W291R	.	.	.
OR10J5	127385	hgsc.bcm.edu	36	1	157771494	157771494	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001004469	exon1	c.T928A	p.X310K	.	.	.
RCSD1	92241	hgsc.bcm.edu	36	1	165933191	165933191	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052862	exon6	c.A706G	p.K236E	.	.	.
C1orf112	55732	hgsc.bcm.edu	36	1	168063497	168063497	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018186	exon12	c.T1019G	p.F340C	.	.	.
METTL13	51603	hgsc.bcm.edu	36	1	170030159	170030159	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014955	exon7	c.C1436A	p.A479E	.	.	.
PADI3	51702	hgsc.bcm.edu	36	1	17467031	17467031	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016233	exon6	c.C639G	p.V213V	.	.	.
ASTN1	460	hgsc.bcm.edu	36	1	175265415	175265415	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004319	exon5	c.A1098T	p.S366S	.	.	.
C1orf25	81627	hgsc.bcm.edu	36	1	183381245	183381245	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030934	exon5	c.C604T	p.H202Y	.	.	.
HMCN1	83872	hgsc.bcm.edu	36	1	184239546	184239546	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031935	exon29	c.A4422C	p.E1474D	.	.	.
HMCN1	83872	hgsc.bcm.edu	36	1	184410286	184410286	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031935	exon103	c.G15832C	p.D5278H	.	.	.
HMCN1	83872	hgsc.bcm.edu	36	1	184414198	184414198	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031935	exon104	c.A15971C	p.K5324T	.	.	.
UBR4	23352	hgsc.bcm.edu	36	1	19291968	19291968	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020765	exon97	c.T14143C	p.S4715P	.	.	.
KIF21B	23046	hgsc.bcm.edu	36	1	199241359	199241359	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017596	exon4	c.G534T	p.E178D	.	.	.
CACNA1S	779	hgsc.bcm.edu	36	1	199320744	199320744	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000069	exon9	c.A1189T	p.S397C	.	.	.
TNNT2	7139	hgsc.bcm.edu	36	1	199600116	199600116	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000364	exon11	c.G422A	p.R141Q	.	.	.
FAM71A	149647	hgsc.bcm.edu	36	1	210865170	210865170	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153606	exon1	c.C328T	p.R110C	.	.	.
USH2A	7399	hgsc.bcm.edu	36	1	214140743	214140743	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_206933	exon39	c.C7428T	p.G2476G	.	.	.
HIST3H3	8290	hgsc.bcm.edu	36	1	226679249	226679249	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003493	exon1	c.A401C	p.E134A	.	.	.
C1orf128	57095	hgsc.bcm.edu	36	1	23984811	23984811	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020362	exon4	c.T380C	p.F127S	.	.	.
C1orf130	400746	hgsc.bcm.edu	36	1	24800090	24800090	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001010980	exon3	c.A155C	p.K52T	.	.	.
GPATCH3	63906	hgsc.bcm.edu	36	1	27090245	27090245	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022078	exon7	c.T1421A	p.L474X	.	.	.
TXLNA	200081	hgsc.bcm.edu	36	1	32430548	32430548	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_175852	exon7	c.A1013T	p.D338V	.	.	.
EIF3I	8668	hgsc.bcm.edu	36	1	32462631	32462631	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003757	exon4	c.A218T	p.D73V	.	.	.
HDAC1	3065	hgsc.bcm.edu	36	1	32565762	32565762	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004964	exon6	c.A533G	p.H178R	.	.	.
C1orf113	79729	hgsc.bcm.edu	36	1	36558110	36558110	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024676	exon11	c.T926A	p.V309E	.	.	.
PTPRF	5792	hgsc.bcm.edu	36	1	43857948	43857948	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_130440	exon28	c.G4916C	p.S1639T	.	.	.
C8A	731	hgsc.bcm.edu	36	1	57124366	57124366	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000562	exon7	c.G1034T	p.G345V	.	.	.
HHLA3	11147	hgsc.bcm.edu	36	1	70593351	70593351	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001036645	exon1	c.A129G	p.P43P	.	.	.
FUBP1	8880	hgsc.bcm.edu	36	1	78201073	78201073	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003902	exon14	c.T1314C	p.Y438Y	.	.	.
GIPC2	54810	hgsc.bcm.edu	36	1	78284587	78284587	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017655	exon1	c.T221A	p.F74Y	.	.	.
CLCA2	9635	hgsc.bcm.edu	36	1	86693727	86693727	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006536	exon14	c.G2761T	p.V921F	.	.	.
SLC2A7	155184	hgsc.bcm.edu	36	1	9005663	9005663	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_207420	exon3	c.A212C	p.K71T	.	.	.
KIAA1377	57562	hgsc.bcm.edu	36	11	101298645	101298645	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020802	exon2	c.A192T	p.Q64H	.	.	.
RPUSD4	84881	hgsc.bcm.edu	36	11	125579377	125579377	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032795	exon6	c.G853A	p.G285S	.	.	.
CALCA	796	hgsc.bcm.edu	36	11	14949232	14949232	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001741	exon2	c.T83G	p.F28C	.	.	.
USH1C	10083	hgsc.bcm.edu	36	11	17480089	17480089	+	Nonsense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153676	exon21	c.T2199G	p.Y733X	.	.	.
USH1C	10083	hgsc.bcm.edu	36	11	17480099	17480099	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153676	exon21	c.T2189C	p.F730S	.	.	.
NAV2	89797	hgsc.bcm.edu	36	11	20058212	20058212	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001111018	exon25	c.C5014G	p.L1672V	.	.	.
NUP98	4928	hgsc.bcm.edu	36	11	3663976	3663976	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016320	exon29	c.G4479A	p.L1493L	.	.	.
RRM1	6240	hgsc.bcm.edu	36	11	4111453	4111453	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001033	exon17	c.G1990C	p.G664R	.	.	.
PEX16	9409	hgsc.bcm.edu	36	11	45892797	45892797	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_057174	exon6	c.C475A	p.P159T	.	.	.
KIAA0652	9776	hgsc.bcm.edu	36	11	46624065	46624065	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001142673	exon5	c.C220T	p.P74S	.	.	.
LRP4	4038	hgsc.bcm.edu	36	11	46853761	46853761	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002334	exon27	c.G3747A	p.V1249V	.	.	.
LRP4	4038	hgsc.bcm.edu	36	11	46874084	46874084	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002334	exon10	c.G1110C	p.Q370H	.	.	.
OR10V1	390201	hgsc.bcm.edu	36	11	59237501	59237501	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001005324	exon1	c.C394T	p.R132X	.	.	.
SCGB2A1	4246	hgsc.bcm.edu	36	11	61732794	61732794	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002407	exon1	c.G15A	p.M5I	.	.	.
GNG3	2785	hgsc.bcm.edu	36	11	62232841	62232841	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012202	exon3	c.G215C	p.C72S	.	.	.
CHRM1	1128	hgsc.bcm.edu	36	11	62434561	62434561	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000738	exon2	c.C588G	p.A196A	.	.	.
CATSPER1	117144	hgsc.bcm.edu	36	11	65549607	65549607	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_053054	exon1	c.C820A	p.P274T	.	.	.
CCS	9973	hgsc.bcm.edu	36	11	66124578	66124578	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005125	exon5	c.C471T	p.G157G	.	.	.
PPFIBP2	8495	hgsc.bcm.edu	36	11	7588154	7588154	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003621	exon6	c.G543C	p.V181V	.	.	.
ME3	10873	hgsc.bcm.edu	36	11	85838667	85838667	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001161586	exon10	c.T1043A	p.L348H	.	.	.
SCUBE2	57758	hgsc.bcm.edu	36	11	9008140	9008140	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020974	exon18	c.C2199A	p.N733K	.	.	.
ZNF143	7702	hgsc.bcm.edu	36	11	9486811	9486811	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003442	exon12	c.A1217C	p.K406T	.	.	.
SBF2	81846	hgsc.bcm.edu	36	11	9790776	9790776	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030962	exon30	c.A4034G	p.E1345G	.	.	.
LAMA2	3908	hgsc.bcm.edu	36	6	129819205	129819205	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001079823	exon48	c.C6740T	p.A2247V	.	.	.
UTRN	7402	hgsc.bcm.edu	36	6	144856277	144856277	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007124	exon32	c.G4585T	p.G1529C	.	.	.
IYD	389434	hgsc.bcm.edu	36	6	150731897	150731897	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001164695	exon1	c.T37A	p.C13S	.	.	.
ESR1	2099	hgsc.bcm.edu	36	6	152374568	152374568	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001122740	exon6	c.G1181T	p.R394L	.	.	.
MYCT1	80177	hgsc.bcm.edu	36	6	153084919	153084919	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025107	exon2	c.T546A	p.S182R	.	.	.
MYCT1	80177	hgsc.bcm.edu	36	6	153084996	153084996	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025107	exon2	c.G623T	p.W208L	.	.	.
PLG	5340	hgsc.bcm.edu	36	6	161059437	161059437	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000301	exon8	c.C909A	p.T303T	.	.	.
MAP3K4	4216	hgsc.bcm.edu	36	6	161453723	161453723	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006724	exon24	c.A4403C	p.K1468T	.	.	.
THBS2	7058	hgsc.bcm.edu	36	6	169392764	169392764	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003247	exon3	c.C41A	p.P14H	.	.	.
FAM8A1	51439	hgsc.bcm.edu	36	6	17714099	17714099	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016255	exon4	c.G973A	p.G325R	.	.	.
CDKAL1	54901	hgsc.bcm.edu	36	6	21339193	21339193	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017774	exon16	c.G1684A	p.V562M	.	.	.
KIAA0319	9856	hgsc.bcm.edu	36	6	24678210	24678210	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001168377	exon12	c.C1891G	p.P631A	.	.	.
SCGN	10590	hgsc.bcm.edu	36	6	25769780	25769780	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006998	exon3	c.T175G	p.L59V	.	.	.
BTN3A1	11119	hgsc.bcm.edu	36	6	26519340	26519340	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001145009	exon8	c.A989C	p.N330T	.	.	.
GPX5	2880	hgsc.bcm.edu	36	6	28605313	28605313	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003996	exon2	c.T194A	p.L65H	.	.	.
DHX16	8449	hgsc.bcm.edu	36	6	30740663	30740663	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003587	exon7	c.T1211C	p.F404S	.	.	.
KIF6	221458	hgsc.bcm.edu	36	6	39436154	39436154	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145027	exon18	c.C2077T	p.L693L	.	.	.
TREM2	54209	hgsc.bcm.edu	36	6	41237084	41237084	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018965	exon2	c.A286G	p.T96A	.	.	.
CUL7	9820	hgsc.bcm.edu	36	6	43119191	43119191	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014780	exon17	c.C3328A	p.P1110T	.	.	.
TNFRSF21	27242	hgsc.bcm.edu	36	6	47308488	47308488	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014452	exon6	c.T1940C	p.V647A	.	.	.
PKHD1	5314	hgsc.bcm.edu	36	6	51828697	51828697	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_170724	exon49	c.A7864T	p.T2622S	.	.	.
PKHD1	5314	hgsc.bcm.edu	36	6	51840635	51840635	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_170724	exon48	c.G7718T	p.R2573L	.	.	.
EFHC1	114327	hgsc.bcm.edu	36	6	52396795	52396795	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018100	exon2	c.C156T	p.L52L	.	.	.
FARS2	10667	hgsc.bcm.edu	36	6	5490444	5490444	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006567	exon5	c.G937A	p.G313S	.	.	.
PGM3	5238	hgsc.bcm.edu	36	6	83945152	83945152	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015599	exon8	c.G988A	p.A330T	.	.	.
SLC35A1	10559	hgsc.bcm.edu	36	6	88275499	88275499	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006416	exon7	c.T773A	p.L258H	.	.	.
BACH2	60468	hgsc.bcm.edu	36	6	90704647	90704647	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021813	exon8	c.C1980G	p.A660A	.	.	.
SUPT6H	6830	hgsc.bcm.edu	36	17	24039299	24039299	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003170	exon24	c.G3070T	p.G1024C	.	.	.
MYO1D	4642	hgsc.bcm.edu	36	17	28089469	28089469	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015194	exon14	c.T1661C	p.I554T	.	.	.
AP1GBP1	11276	hgsc.bcm.edu	36	17	33011654	33011654	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007247	exon7	c.A760C	p.S254R	.	.	.
FAM134C	162427	hgsc.bcm.edu	36	17	37987399	37987399	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178126	exon9	c.G1359T	p.S453S	.	.	.
PSME3	10197	hgsc.bcm.edu	36	17	38243680	38243680	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005789	exon6	c.C337T	p.Q113X	.	.	.
CD300LG	146894	hgsc.bcm.edu	36	17	39294761	39294761	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145273	exon7	c.A955T	p.T319S	.	.	.
TBX21	30009	hgsc.bcm.edu	36	17	43175053	43175053	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013351	exon2	c.C570G	p.V190V	.	.	.
ITGA3	3675	hgsc.bcm.edu	36	17	45513702	45513702	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002204	exon23	c.A2850T	p.V950V	.	.	.
SGCA	6442	hgsc.bcm.edu	36	17	45602613	45602613	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000023	exon7	c.C858G	p.F286L	.	.	.
ABCC3	8714	hgsc.bcm.edu	36	17	46100262	46100262	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003786	exon13	c.C1675A	p.P559T	.	.	.
MRC2	9902	hgsc.bcm.edu	36	17	58106901	58106901	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006039	exon10	c.C1588A	p.P530T	.	.	.
AXIN2	8313	hgsc.bcm.edu	36	17	60984871	60984871	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004655	exon2	c.C330A	p.F110L	.	.	.
ABCA6	23460	hgsc.bcm.edu	36	17	64586950	64586950	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_080284	exon38	c.A4748T	p.E1583V	.	.	.
TTYH2	94015	hgsc.bcm.edu	36	17	69738650	69738650	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032646	exon3	c.A331T	p.N111Y	.	.	.
EVPL	2125	hgsc.bcm.edu	36	17	71516369	71516369	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001988	exon22	c.C4512A	p.V1504V	.	.	.
ATP1B2	482	hgsc.bcm.edu	36	17	7499791	7499791	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001678	exon7	c.C726A	p.P242P	.	.	.
TP53	7157	hgsc.bcm.edu	36	17	7518273	7518273	+	Missense_Mutation	SNP	C	C	T	rs28934575	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001126114	exon7	c.G733A	p.G245S	TP53,central_nervous_system,brain,Substitution - Missense,0	.	.
DNAH2	146754	hgsc.bcm.edu	36	17	7636328	7636328	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020877	exon45	c.A7087C	p.I2363L	.	.	.
ALOX12B	242	hgsc.bcm.edu	36	17	7930147	7930147	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001139	exon2	c.G264C	p.Q88H	.	.	.
SON	6651	hgsc.bcm.edu	36	21	33846461	33846461	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032195	exon3	c.G3054A	p.M1018I	.	.	.
IGSF5	150084	hgsc.bcm.edu	36	21	40059626	40059626	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001080444	exon3	c.G395T	p.G132V	.	.	.
ACSM1	116285	hgsc.bcm.edu	36	16	20588777	20588777	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052956	exon5	c.T785A	p.V262D	.	.	.
OTOA	146183	hgsc.bcm.edu	36	16	21647180	21647180	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144672	exon19	c.G2134A	p.G712S	.	.	.
JMJD5	79831	hgsc.bcm.edu	36	16	27129128	27129128	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001145348	exon2	c.G297A	p.R99R	.	.	.
MVP	9961	hgsc.bcm.edu	36	16	29763543	29763543	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017458	exon11	c.G1863C	p.R621S	.	.	.
ZNF267	10308	hgsc.bcm.edu	36	16	31834454	31834454	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003414	exon4	c.A1383G	p.E461E	.	.	.
DNAJA3	9093	hgsc.bcm.edu	36	16	4433083	4433083	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001135110	exon6	c.C848G	p.S283C	.	.	.
ARL2BP	23568	hgsc.bcm.edu	36	16	55841856	55841856	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012106	exon5	c.T326G	p.F109C	.	.	.
CCDC135	84229	hgsc.bcm.edu	36	16	56291575	56291575	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032269	exon4	c.C396A	p.T132T	.	.	.
CSNK2A2	1459	hgsc.bcm.edu	36	16	56760060	56760060	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001896	exon6	c.G468T	p.R156S	.	.	.
CIRH1A	84916	hgsc.bcm.edu	36	16	67756908	67756908	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032830	exon15	c.T1811G	p.F604C	.	.	.
NFAT5	10725	hgsc.bcm.edu	36	16	68283809	68283809	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138714	exon14	c.C2298T	p.S766S	.	.	.
SF3B3	23450	hgsc.bcm.edu	36	16	69139783	69139783	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012426	exon11	c.A1339G	p.M447V	.	.	.
ZFHX3	463	hgsc.bcm.edu	36	16	71548981	71548981	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006885	exon2	c.A2565G	p.S855S	.	.	.
CFDP1	10428	hgsc.bcm.edu	36	16	73885352	73885352	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006324	exon7	c.G899T	p.X300L	.	.	.
WFDC1	58189	hgsc.bcm.edu	36	16	82910615	82910615	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021197	exon4	c.C499A	p.P167T	.	.	.
CABYR	26256	hgsc.bcm.edu	36	18	19989816	19989816	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138644	exon4	c.A353C	p.K118T	.	.	.
FHOD3	80206	hgsc.bcm.edu	36	18	32492105	32492105	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025135	exon11	c.C1266A	p.T422T	.	.	.
ME2	4200	hgsc.bcm.edu	36	18	46693178	46693178	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001168335	exon4	c.C252T	p.Y84Y	.	.	.
DCC	1630	hgsc.bcm.edu	36	18	48985724	48985724	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005215	exon10	c.A1714C	p.K572Q	.	.	.
LAMA1	284217	hgsc.bcm.edu	36	18	6970591	6970591	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005559	exon42	c.T5936G	p.F1979C	.	.	.
C3orf24	115795	hgsc.bcm.edu	36	3	10121320	10121320	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001164839	exon2	c.G139C	p.E47Q	.	.	.
KALRN	8997	hgsc.bcm.edu	36	3	125895917	125895917	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001024660	exon53	c.G7454T	p.G2485V	.	.	.
ITGB5	3693	hgsc.bcm.edu	36	3	125970563	125970563	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002213	exon12	c.G2004T	p.W668C	.	.	.
ITGB5	3693	hgsc.bcm.edu	36	3	125998039	125998039	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002213	exon10	c.G1579C	p.D527H	.	.	.
XRN1	54464	hgsc.bcm.edu	36	3	143558467	143558467	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_019001	exon31	c.C3649T	p.Q1217X	.	.	.
HLTF	6596	hgsc.bcm.edu	36	3	150242009	150242009	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_139048	exon20	c.A2334G	p.V778V	.	.	.
P2RY12	64805	hgsc.bcm.edu	36	3	152538362	152538362	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022788	exon3	c.C962T	p.S321F	.	.	.
LEKR1	389170	hgsc.bcm.edu	36	3	158245904	158245904	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001004316	exon13	c.C1750G	p.Q584E	.	.	.
EVI1	2122	hgsc.bcm.edu	36	3	170290490	170290490	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001105077	exon15	c.C3024A	p.S1008S	.	.	.
PLD1	5337	hgsc.bcm.edu	36	3	172887177	172887177	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002662	exon16	c.C1859A	p.P620H	.	.	.
FNDC3B	64778	hgsc.bcm.edu	36	3	173507908	173507908	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001135095	exon10	c.C1123G	p.H375D	.	.	.
EIF2B5	8893	hgsc.bcm.edu	36	3	185345405	185345405	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003907	exon16	c.G2146A	p.E716K	.	.	.
SENP2	59343	hgsc.bcm.edu	36	3	186830279	186830279	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021627	exon17	c.T1723C	p.F575L	.	.	.
BCL6	604	hgsc.bcm.edu	36	3	188926063	188926063	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001130845	exon8	c.C1757A	p.P586Q	.	.	.
KCNH8	131096	hgsc.bcm.edu	36	3	19534527	19534527	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144633	exon15	c.A2576G	p.K859R	.	.	.
GP5	2814	hgsc.bcm.edu	36	3	195598679	195598679	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004488	exon2	c.T1622A	p.F541Y	.	.	.
PLCD1	5333	hgsc.bcm.edu	36	3	38026462	38026462	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006225	exon8	c.C1224G	p.I408M	.	.	.
CCR8	1237	hgsc.bcm.edu	36	3	39349513	39349513	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005201	exon2	c.A687C	p.Q229H	.	.	.
WDR51A	25886	hgsc.bcm.edu	36	3	52158402	52158402	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001161581	exon4	c.A205T	p.R69W	.	.	.
SETD2	29072	hgsc.bcm.edu	36	3	47137591	47137591	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014159	exon3	c.C3539T	p.P1180L	.	.	.
CHPT1	56994	hgsc.bcm.edu	36	12	100616004	100616004	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020244	exon1	c.G234A	p.T78T	.	.	.
PAH	5053	hgsc.bcm.edu	36	12	101761655	101761655	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000277	exon11	c.C1098T	p.P366P	.	.	.
STAB2	55576	hgsc.bcm.edu	36	12	102608366	102608366	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017564	exon30	c.G3217C	p.D1073H	.	.	.
STAB2	55576	hgsc.bcm.edu	36	12	102630310	102630310	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017564	exon41	c.A4370C	p.K1457T	.	.	.
ACACB	32	hgsc.bcm.edu	36	12	108144772	108144772	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001093	exon24	c.A3642G	p.K1214K	.	.	.
ANAPC7	51434	hgsc.bcm.edu	36	12	109308553	109308553	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001137664	exon6	c.T881G	p.F294C	.	.	.
DTX1	1840	hgsc.bcm.edu	36	12	112017272	112017272	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004416	exon7	c.G1429C	p.E477Q	.	.	.
CIT	11113	hgsc.bcm.edu	36	12	118657416	118657416	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007174	exon24	c.C2962T	p.R988X	.	.	.
PITPNM2	57605	hgsc.bcm.edu	36	12	122064385	122064385	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020845	exon3	c.A236C	p.K79T	.	.	.
CCDC92	80212	hgsc.bcm.edu	36	12	122994779	122994779	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025140	exon2	c.C27T	p.Y9Y	.	.	.
TMEM132D	121256	hgsc.bcm.edu	36	12	128129142	128129142	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133448	exon8	c.G2005T	p.G669W	.	.	.
STRAP	11171	hgsc.bcm.edu	36	12	15927853	15927853	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007178	exon2	c.C224A	p.A75D	.	.	.
TSPAN11	441631	hgsc.bcm.edu	36	12	31023826	31023826	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001080509	exon5	c.C410G	p.P137R	.	.	.
BICD1	636	hgsc.bcm.edu	36	12	32372164	32372164	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001003398	exon5	c.C1508T	p.T503M	.	.	.
ZNF641	121274	hgsc.bcm.edu	36	12	47023232	47023232	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001172681	exon6	c.A1066C	p.K356Q	.	.	.
ANKRD33	341405	hgsc.bcm.edu	36	12	50571278	50571278	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001130015	exon6	c.C706T	p.P236S	.	.	.
KRT84	3890	hgsc.bcm.edu	36	12	51065138	51065138	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033045	exon1	c.G499A	p.E167K	.	.	.
KRT72	140807	hgsc.bcm.edu	36	12	51266141	51266141	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001146226	exon8	c.A1302T	p.K434N	.	.	.
ITGB7	3695	hgsc.bcm.edu	36	12	51877594	51877594	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000889	exon5	c.G524C	p.G175A	.	.	.
MFSD5	84975	hgsc.bcm.edu	36	12	51933312	51933312	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032889	exon2	c.C426T	p.A142A	.	.	.
HOXC4	3221	hgsc.bcm.edu	36	12	52735040	52735040	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014620	exon4	c.G579C	p.L193L	.	.	.
FAM62A	23344	hgsc.bcm.edu	36	12	54812585	54812585	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015292	exon9	c.C1098A	p.T366T	.	.	.
SMARCC2	6601	hgsc.bcm.edu	36	12	54864963	54864963	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_139067	exon5	c.A424C	p.I142L	.	.	.
ATP5B	506	hgsc.bcm.edu	36	12	55319271	55319271	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001686	exon9	c.A1375C	p.K459Q	.	.	.
LRP1	4035	hgsc.bcm.edu	36	12	55836278	55836278	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002332	exon9	c.C1362A	p.T454T	.	.	.
LRP1	4035	hgsc.bcm.edu	36	12	55860814	55860814	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002332	exon33	c.C5484A	p.T1828T	.	.	.
TSFM	10102	hgsc.bcm.edu	36	12	56467118	56467118	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001172695	exon4	c.G389A	p.R130K	.	.	.
ENO2	2026	hgsc.bcm.edu	36	12	6901571	6901571	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001975	exon10	c.G1159T	p.G387W	.	.	.
C12orf57	113246	hgsc.bcm.edu	36	12	6924014	6924014	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138425	exon2	c.C167G	p.P56R	.	.	.
LPCAT3	10162	hgsc.bcm.edu	36	12	6995872	6995872	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005768	exon1	c.C118T	p.Q40X	.	.	.
CLSTN3	9746	hgsc.bcm.edu	36	12	7179208	7179208	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014718	exon4	c.G402T	p.R134R	.	.	.
CD163L1	283316	hgsc.bcm.edu	36	12	7423155	7423155	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_174941	exon9	c.C2057T	p.S686L	.	.	.
LRRIQ1	84125	hgsc.bcm.edu	36	12	83983222	83983222	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032165	exon9	c.G2443A	p.A815T	.	.	.
WNK1	65125	hgsc.bcm.edu	36	12	875711	875711	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001184985	exon24	c.G6577A	p.A2193T	.	.	.
PZP	5858	hgsc.bcm.edu	36	12	9201200	9201200	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002864	exon28	c.G3388A	p.A1130T	.	.	.
USP44	84101	hgsc.bcm.edu	36	12	94450841	94450841	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001042403	exon2	c.A1323T	p.T441T	.	.	.
SLC16A7	9194	hgsc.bcm.edu	36	12	58451387	58451388	+	Frame_Shift_Del	DEL	AC	AC	-	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	AC	AC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004731	exon3	c.338_339del	p.113_113del	.	.	.
ACSS3	79611	hgsc.bcm.edu	36	12	80137927	80137927	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024560	exon11	c.G1455T	p.M485I	ACSS3,lung,NS,Substitution - Missense,+2	.	.
LRRC57	255252	hgsc.bcm.edu	36	15	40624664	40624664	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153260	exon5	c.C581T	p.P194L	.	.	.
ALDH1A2	8854	hgsc.bcm.edu	36	15	56090205	56090205	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_170697	exon2	c.G139A	p.V47I	.	.	.
USP3	9960	hgsc.bcm.edu	36	15	61668260	61668260	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006537	exon14	c.C1394A	p.S465Y	.	.	.
MYO9A	4649	hgsc.bcm.edu	36	15	69907344	69907344	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006901	exon41	c.T7118G	p.I2373S	.	.	.
BOD1L	259282	hgsc.bcm.edu	36	4	13180750	13180750	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_148894	exon26	c.A9139G	p.K3047E	.	.	.
SMARCA5	8467	hgsc.bcm.edu	36	4	144684179	144684179	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003601	exon15	c.A1971T	p.G657G	.	.	.
DCHS2	54798	hgsc.bcm.edu	36	4	155461237	155461237	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017639	exon14	c.A3399T	p.T1133T	.	.	.
C4orf41	60684	hgsc.bcm.edu	36	4	184826184	184826184	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_199053	exon5	c.T480A	p.A160A	.	.	.
SNX25	83891	hgsc.bcm.edu	36	4	186490776	186490776	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031953	exon10	c.G1291C	p.D431H	.	.	.
GABRA4	2557	hgsc.bcm.edu	36	4	46690163	46690163	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000809	exon1	c.G36A	p.L12L	.	.	.
GABRB1	2560	hgsc.bcm.edu	36	4	47122511	47122511	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000812	exon9	c.G1144T	p.E382X	.	.	.
ATP10D	57205	hgsc.bcm.edu	36	4	47260471	47260471	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020453	exon15	c.A2785G	p.N929D	.	.	.
STK32B	55351	hgsc.bcm.edu	36	4	5512754	5512754	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018401	exon9	c.C807T	p.S269S	.	.	.
WDFY3	23001	hgsc.bcm.edu	36	4	85913086	85913086	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014991	exon30	c.C4775T	p.S1592F	.	.	.
PPM1K	152926	hgsc.bcm.edu	36	4	89402882	89402882	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152542	exon7	c.G1008T	p.E336D	.	.	.
HERC3	8916	hgsc.bcm.edu	36	4	89818166	89818166	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014606	exon19	c.A2054T	p.N685I	.	.	.
MID1	4281	hgsc.bcm.edu	36	X	10495192	10495192	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001193277	exon2	c.G396C	p.K132N	.	.	.
COL4A6	1288	hgsc.bcm.edu	36	X	107295283	107295283	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033641	exon38	c.G3781T	p.G1261W	.	.	.
RGAG1	57529	hgsc.bcm.edu	36	X	109582525	109582525	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020769	exon3	c.C2024T	p.A675V	.	.	.
CHRDL1	91851	hgsc.bcm.edu	36	X	109809266	109809266	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001143981	exon11	c.G1200C	p.M400I	.	.	.
AFF2	2334	hgsc.bcm.edu	36	X	147551359	147551359	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002025	exon3	c.C419G	p.S140C	.	.	.
PHKA2	5256	hgsc.bcm.edu	36	X	18836854	18836854	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000292	exon21	c.T2346G	p.I782M	.	.	.
DMD	1756	hgsc.bcm.edu	36	X	32271303	32271303	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004011	exon12	c.A1585G	p.K529E	.	.	.
LAS1L	81887	hgsc.bcm.edu	36	X	64651522	64651522	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031206	exon13	c.C1984T	p.P662S	.	.	.
ZMYM3	9203	hgsc.bcm.edu	36	X	70385726	70385726	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001171162	exon8	c.C1489A	p.P497T	.	.	.
FAM46D	169966	hgsc.bcm.edu	36	X	79584739	79584739	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001170574	exon5	c.A45C	p.I15I	.	.	.
TNMD	64102	hgsc.bcm.edu	36	X	99726694	99726694	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022144	exon1	c.A23C	p.N8T	.	.	.
C2orf40	84417	hgsc.bcm.edu	36	2	106056864	106056864	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032411	exon3	c.G218C	p.W73S	.	.	.
GREB1	9687	hgsc.bcm.edu	36	2	11614206	11614206	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_148903	exon2	c.C15A	p.Y5X	.	.	.
ERCC3	2071	hgsc.bcm.edu	36	2	127731671	127731671	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000122	exon15	c.C2320T	p.H774Y	.	.	.
YSK4	80122	hgsc.bcm.edu	36	2	135455425	135455425	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025052	exon9	c.A3356C	p.K1119T	.	.	.
TPO	7173	hgsc.bcm.edu	36	2	1486744	1486744	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_175719	exon13	c.G2233C	p.D745H	.	.	.
NR4A2	4929	hgsc.bcm.edu	36	2	156892700	156892700	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006186	exon5	c.C1067A	p.S356Y	.	.	.
LRP2	4036	hgsc.bcm.edu	36	2	169752836	169752836	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004525	exon49	c.C9218A	p.P3073H	.	.	.
LRP2	4036	hgsc.bcm.edu	36	2	169770293	169770293	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004525	exon41	c.C7657T	p.P2553S	.	.	.
CALCRL	10203	hgsc.bcm.edu	36	2	187919242	187919242	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005795	exon15	c.C1300G	p.H434D	.	.	.
STAT1	6772	hgsc.bcm.edu	36	2	191580592	191580592	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007315	exon5	c.T314C	p.I105T	.	.	.
ANKRD44	91526	hgsc.bcm.edu	36	2	197598194	197598194	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001195144	exon17	c.G1693C	p.G565R	.	.	.
CTLA4	1493	hgsc.bcm.edu	36	2	204440952	204440952	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005214	exon1	c.C42T	p.N14N	.	.	.
TNS1	7145	hgsc.bcm.edu	36	2	218466457	218466457	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022648	exon8	c.G292T	p.D98Y	.	.	.
SLC11A1	6556	hgsc.bcm.edu	36	2	218962861	218962861	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000578	exon9	c.C820G	p.R274G	.	.	.
RNF25	64320	hgsc.bcm.edu	36	2	219238908	219238908	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022453	exon7	c.A548C	p.E183A	.	.	.
PSMD1	5707	hgsc.bcm.edu	36	2	231658021	231658021	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002807	exon15	c.T1767A	p.A589A	.	.	.
DGKD	8527	hgsc.bcm.edu	36	2	234010817	234010817	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152879	exon8	c.A875C	p.K292T	.	.	.
TRPM8	79054	hgsc.bcm.edu	36	2	234500002	234500002	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024080	exon2	c.C81A	p.S27R	.	.	.
FARP2	9855	hgsc.bcm.edu	36	2	242078056	242078056	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014808	exon22	c.G2428C	p.E810Q	.	.	.
GALNT14	79623	hgsc.bcm.edu	36	2	31022229	31022229	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024572	exon7	c.G666T	p.R222R	.	.	.
EHD3	30845	hgsc.bcm.edu	36	2	31342722	31342722	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014600	exon6	c.A1256C	p.H419P	.	.	.
MXD1	4084	hgsc.bcm.edu	36	2	69996764	69996764	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002357	exon2	c.A81G	p.E27E	.	.	.
C2orf42	54980	hgsc.bcm.edu	36	2	70261979	70261979	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017880	exon3	c.A643G	p.K215E	.	.	.
DCTN1	1639	hgsc.bcm.edu	36	2	74448433	74448433	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_023019	exon13	c.C1680T	p.A560A	.	.	.
RTKN	6242	hgsc.bcm.edu	36	2	74511279	74511279	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001015056	exon3	c.C195G	p.S65S	.	.	.
DMRT2	10655	hgsc.bcm.edu	36	9	1046729	1046729	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181872	exon4	c.C1142A	p.A381E	.	.	.
ABCA1	19	hgsc.bcm.edu	36	9	106598170	106598170	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005502	exon39	c.G5367T	p.E1789D	.	.	.
CDK5RAP2	55755	hgsc.bcm.edu	36	9	122210459	122210459	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018249	exon31	c.C4713G	p.H1571Q	.	.	.
CDK5RAP2	55755	hgsc.bcm.edu	36	9	122260559	122260559	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018249	exon20	c.C2365A	p.L789M	.	.	.
CIZ1	25792	hgsc.bcm.edu	36	9	129978481	129978481	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001131015	exon12	c.T1745C	p.V582A	.	.	.
SH3GLB2	56904	hgsc.bcm.edu	36	9	130816601	130816601	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020145	exon5	c.G471C	p.K157N	.	.	.
DDX31	64794	hgsc.bcm.edu	36	9	134495524	134495524	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022779	exon16	c.T1894C	p.L632L	.	.	.
GTF3C5	9328	hgsc.bcm.edu	36	9	134907341	134907341	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001122823	exon2	c.A200T	p.K67M	.	.	.
GRIN1	2902	hgsc.bcm.edu	36	9	139160064	139160064	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007327	exon3	c.G459C	p.E153D	.	.	.
KIAA1797	54914	hgsc.bcm.edu	36	9	20730242	20730242	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017794	exon7	c.C295T	p.H99Y	.	.	.
DDX58	23586	hgsc.bcm.edu	36	9	32457813	32457813	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014314	exon15	c.T2132A	p.L711H	.	.	.
NFX1	4799	hgsc.bcm.edu	36	9	33303741	33303741	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_147134	exon7	c.A1538T	p.E513V	.	.	.
CCIN	881	hgsc.bcm.edu	36	9	36160858	36160858	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005893	exon1	c.G1359T	p.G453G	.	.	.
KIAA1432	57589	hgsc.bcm.edu	36	9	5728479	5728479	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020829	exon7	c.A605T	p.N202I	.	.	.
VPS13A	23230	hgsc.bcm.edu	36	9	79057015	79057015	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001018037	exon22	c.C2215T	p.H739Y	.	.	.
IPPK	64768	hgsc.bcm.edu	36	9	94440255	94440255	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022755	exon9	c.G765T	p.R255S	.	.	.
ZNF169	169841	hgsc.bcm.edu	36	9	96094530	96094530	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_194320	exon3	c.G120T	p.R40S	.	.	.
CORO2A	7464	hgsc.bcm.edu	36	9	99926879	99926879	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003389	exon12	c.T1576A	p.X526R	.	.	.
GTF3C5	9328	hgsc.bcm.edu	36	9	134907344	134907344	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001122823	exon2	c.203delA	p.D68fs	.	.	.
TMTC4	84899	hgsc.bcm.edu	36	13	100085136	100085136	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032813	exon12	c.T1430C	p.V477A	.	.	.
NALCN	259232	hgsc.bcm.edu	36	13	100526229	100526229	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052867	exon35	c.A3950C	p.K1317T	.	.	.
SACS	26278	hgsc.bcm.edu	36	13	22812494	22812494	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014363	exon10	c.A3521G	p.K1174R	.	.	.
SACS	26278	hgsc.bcm.edu	36	13	22826841	22826841	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014363	exon8	c.A1910C	p.K637T	.	.	.
SPATA13	221178	hgsc.bcm.edu	36	13	23762904	23762904	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001166271	exon9	c.C2962A	p.L988M	.	.	.
FAM48A	55578	hgsc.bcm.edu	36	13	36512565	36512565	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017569	exon9	c.A547T	p.S183C	.	.	.
PCDH9	5101	hgsc.bcm.edu	36	13	65777117	65777117	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020403	exon4	c.T3283A	p.C1095S	.	.	.
LMO7	4008	hgsc.bcm.edu	36	13	75233152	75233152	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005358	exon5	c.T450G	p.D150E	.	.	.
PYROXD2	84795	hgsc.bcm.edu	36	10	100133610	100133610	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032709	exon16	c.G1681A	p.G561S	C10orf33,central_nervous_system,brain,Substitution - Missense,+1	.	.
CPN1	1369	hgsc.bcm.edu	36	10	101825804	101825804	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001308	exon2	c.G274C	p.G92R	.	.	.
GBF1	8729	hgsc.bcm.edu	36	10	104125237	104125237	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001199378	exon30	c.G3792T	p.W1264C	.	.	.
SUFU	51684	hgsc.bcm.edu	36	10	104258941	104258941	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016169	exon2	c.T208C	p.Y70H	.	.	.
OBFC1	79991	hgsc.bcm.edu	36	10	105667311	105667311	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024928	exon2	c.A32G	p.E11G	.	.	.
TECTB	6975	hgsc.bcm.edu	36	10	114043746	114043746	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_058222	exon6	c.G608A	p.S203N	.	.	.
C10orf81	79949	hgsc.bcm.edu	36	10	115517205	115517205	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001193435	exon3	c.A72C	p.E24D	.	.	.
PNLIP	5406	hgsc.bcm.edu	36	10	118304931	118304931	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000936	exon8	c.C733T	p.P245S	.	.	.
KIAA1598	57698	hgsc.bcm.edu	36	10	118679392	118679392	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018330	exon10	c.T970G	p.Y324D	.	.	.
C10orf84	63877	hgsc.bcm.edu	36	10	120075676	120075676	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001134672	exon6	c.A523T	p.N175Y	.	.	.
C10orf141	642938	hgsc.bcm.edu	36	10	128826209	128826209	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001039762	exon6	c.T1322C	p.I441T	.	.	.
PRPF18	8559	hgsc.bcm.edu	36	10	13698466	13698466	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003675	exon9	c.G855T	p.M285I	.	.	.
CACNB2	783	hgsc.bcm.edu	36	10	18843178	18843178	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_201596	exon7	c.C678T	p.D226D	.	.	.
NRP1	8829	hgsc.bcm.edu	36	10	33526617	33526617	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001024628	exon12	c.A1891C	p.K631Q	.	.	.
ALOX5	240	hgsc.bcm.edu	36	10	45256842	45256842	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000698	exon9	c.G1230T	p.K410N	.	.	.
A1CF	29974	hgsc.bcm.edu	36	10	52280459	52280459	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001198820	exon4	c.C95G	p.S32C	.	.	.
ANKRD16	54522	hgsc.bcm.edu	36	10	5965017	5965017	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001009943	exon5	c.A807T	p.R269S	.	.	.
HK1	3098	hgsc.bcm.edu	36	10	70819029	70819029	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033498	exon17	c.A2018T	p.E673V	.	.	.
PRF1	5551	hgsc.bcm.edu	36	10	72027896	72027896	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005041	exon3	c.G1587T	p.L529L	.	.	.
ITIH5	80760	hgsc.bcm.edu	36	10	7661806	7661806	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030569	exon9	c.C1336T	p.L446L	.	.	.
DYDC1	143241	hgsc.bcm.edu	36	10	82085903	82085903	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138812	exon8	c.C523A	p.Q175K	.	.	.
OPN4	94233	hgsc.bcm.edu	36	10	88405899	88405899	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001030015	exon2	c.G152T	p.G51V	.	.	.
SLIT1	6585	hgsc.bcm.edu	36	10	98756373	98756373	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003061	exon32	c.G3436T	p.G1146C	.	.	.
APC	324	hgsc.bcm.edu	36	5	112203310	112203310	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127511	exon14	c.G4066T	p.E1356X	APC,pancreas,NS,Substitution - coding silent,-2	.	.
FBN2	2201	hgsc.bcm.edu	36	5	127669501	127669501	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001999	exon43	c.A5461C	p.N1821H	.	.	.
SLC22A4	6583	hgsc.bcm.edu	36	5	131698450	131698450	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003059	exon7	c.C1187G	p.P396R	.	.	.
PSD2	84249	hgsc.bcm.edu	36	5	139173103	139173103	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032289	exon3	c.G397T	p.V133L	.	.	.
PCDH12	51294	hgsc.bcm.edu	36	5	141315681	141315681	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016580	exon1	c.T1920C	p.S640S	.	.	.
CSF1R	1436	hgsc.bcm.edu	36	5	149430006	149430006	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005211	exon9	c.T1251G	p.L417L	.	.	.
UIMC1	51720	hgsc.bcm.edu	36	5	176328195	176328195	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001199298	exon6	c.G1167C	p.L389F	.	.	.
LIFR	3977	hgsc.bcm.edu	36	5	38542393	38542393	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127671	exon8	c.C1090A	p.P364T	.	.	.