Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
CUL1	8454	hgsc.bcm.edu	36	7	148125840	148125841	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003592	exon18	c.1903_1904insT	p.I635fs	.	.	.
KIR2DL1	3802	hgsc.bcm.edu	36	19	59986280	59986281	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014218	exon6	c.810_811insA	p.N270fs	.	.	.
SLC9A9	285195	hgsc.bcm.edu	36	3	144775669	144775670	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_173653	exon8	c.951_952insT	p.F317fs	.	.	.
IFT80	57560	hgsc.bcm.edu	36	3	161479710	161479711	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001190242	exon15	c.1390_1391insA	p.W464fs	.	.	.
SEC31A	22872	hgsc.bcm.edu	36	4	84007343	84007344	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001077207	exon9	c.1033_1034insA	p.Q345fs	.	.	.
SLC12A9	56996	hgsc.bcm.edu	36	7	100292591	100292591	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020246	exon5	c.C614T	p.A205V	.	.	.
KCND2	3751	hgsc.bcm.edu	36	7	120173199	120173199	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_012281	exon5	c.C1597T	p.R533X	KCND2,central_nervous_system,brain,Substitution - Nonsense,0	.	.
LRGUK	136332	hgsc.bcm.edu	36	7	133462760	133462760	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144648	exon1	c.G100T	p.A34S	.	.	.
BRAF	673	hgsc.bcm.edu	36	7	140099605	140099605	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004333	exon15	c.T1799A	p.V600E	BRAF,pituitary,NS,Substitution - Missense,0	.	.
TRPV6	55503	hgsc.bcm.edu	36	7	142281415	142281415	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018646	exon13	c.G1696A	p.A566T	.	.	.
SKAP2	8935	hgsc.bcm.edu	36	7	26733036	26733036	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003930	exon7	c.G584A	p.R195H	.	.	.
BMPER	168667	hgsc.bcm.edu	36	7	34064263	34064263	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_133468	exon10	c.G995A	p.R332H	.	.	.
PKD1L1	168507	hgsc.bcm.edu	36	7	47815635	47815635	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138295	exon51	c.C7647T	p.G2549G	.	.	.
RABGEF1	27342	hgsc.bcm.edu	36	7	65911625	65911625	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014504	exon9	c.A1395G	p.Q465Q	.	.	.
AUTS2	26053	hgsc.bcm.edu	36	7	69002235	69002235	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015570	exon2	c.C337T	p.R113C	.	.	.
CROT	54677	hgsc.bcm.edu	36	7	86828801	86828801	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021151	exon5	c.A400G	p.N134D	.	.	.
ZNF804B	219578	hgsc.bcm.edu	36	7	88685419	88685419	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_181646	exon2	c.G123T	p.K41N	.	.	.
AKAP9	10142	hgsc.bcm.edu	36	7	91528612	91528612	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_147185	exon23	c.C5704T	p.R1902C	.	.	.
PCSK2	5126	hgsc.bcm.edu	36	20	17394059	17394059	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002594	exon11	c.C1291T	p.R431C	.	.	.
ZNF337	26152	hgsc.bcm.edu	36	20	25604945	25604945	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015655	exon5	c.C979T	p.R327X	.	.	.
C20orf152	140894	hgsc.bcm.edu	36	20	34075068	34075068	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_080834	exon11	c.T1388C	p.M463T	.	.	.
SMOX	54498	hgsc.bcm.edu	36	20	4111062	4111062	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_175839	exon5	c.G936A	p.S312S	.	.	.
PREX1	57580	hgsc.bcm.edu	36	20	46729639	46729639	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020820	exon12	c.G1496A	p.G499D	.	.	.
TTC5	91875	hgsc.bcm.edu	36	14	19843929	19843929	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138376	exon1	c.C8A	p.A3D	.	.	.
DAD1	1603	hgsc.bcm.edu	36	14	22113872	22113872	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001344	exon2	c.C313T	p.H105Y	.	.	.
TM9SF1	10548	hgsc.bcm.edu	36	14	23728655	23728655	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006405	exon6	c.G1627T	p.G543C	.	.	.
C14orf50	145376	hgsc.bcm.edu	36	14	64123708	64123708	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_172365	exon10	c.G755A	p.R252Q	.	.	.
NRXN3	9369	hgsc.bcm.edu	36	14	79199971	79199971	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_138970	exon3	c.T527C	p.V176A	.	.	.
SERPINA4	5267	hgsc.bcm.edu	36	14	94100092	94100092	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006215	exon2	c.G520C	p.D174H	.	.	.
CABIN1	23523	hgsc.bcm.edu	36	22	22810554	22810554	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001199281	exon21	c.C2933T	p.A978V	.	.	.
ZNF491	126069	hgsc.bcm.edu	36	19	11778212	11778212	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152356	exon3	c.C444T	p.T148T	.	.	.
ZFP82	284406	hgsc.bcm.edu	36	19	41576466	41576466	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133466	exon5	c.G616T	p.A206S	.	.	.
SLC17A7	57030	hgsc.bcm.edu	36	19	54630285	54630285	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020309	exon3	c.T386G	p.V129G	.	.	.
SIGLEC8	27181	hgsc.bcm.edu	36	19	56653172	56653172	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014442	exon1	c.C282A	p.G94G	.	.	.
USP29	57663	hgsc.bcm.edu	36	19	62333734	62333734	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020903	exon4	c.G1879A	p.A627T	.	.	.
ELAVL1	1994	hgsc.bcm.edu	36	19	7934661	7934661	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001419	exon6	c.C687T	p.S229S	.	.	.
ZNF426	79088	hgsc.bcm.edu	36	19	9500398	9500398	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024106	exon8	c.G1323A	p.T441T	.	.	.
NUDCD1	84955	hgsc.bcm.edu	36	8	110371205	110371205	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032869	exon5	c.T774G	p.G258G	.	.	.
CSMD3	114788	hgsc.bcm.edu	36	8	114100563	114100563	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198123	exon6	c.A939G	p.P313P	.	.	.
COL14A1	7373	hgsc.bcm.edu	36	8	121291287	121291287	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_021110	exon12	c.C1433A	p.P478H	.	.	.
MTBP	27085	hgsc.bcm.edu	36	8	121536887	121536887	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022045	exon6	c.T516G	p.L172L	.	.	.
ADCY8	114	hgsc.bcm.edu	36	8	131862268	131862268	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001115	exon18	c.C3306T	p.G1102G	.	.	.
TRAPPC9	83696	hgsc.bcm.edu	36	8	141439470	141439470	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001160372	exon9	c.G1356A	p.T452T	.	.	.
ADAM28	10863	hgsc.bcm.edu	36	8	24263358	24263358	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014265	exon19	c.C2027T	p.A676V	.	.	.
ASH2L	9070	hgsc.bcm.edu	36	8	38097821	38097821	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001105214	exon10	c.C880T	p.R294X	.	.	.
EYA1	2138	hgsc.bcm.edu	36	8	72291607	72291607	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_172060	exon12	c.G1135A	p.A379T	.	.	.
CRISPLD1	83690	hgsc.bcm.edu	36	8	76092155	76092155	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031461	exon10	c.A1042C	p.N348H	.	.	.
AGL	178	hgsc.bcm.edu	36	1	100099751	100099751	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000645	exon1	c.C136T	p.R46C	.	.	.
OLFM3	118427	hgsc.bcm.edu	36	1	102042465	102042465	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_058170	exon6	c.G1294A	p.A432T	.	.	.
KCNA2	3737	hgsc.bcm.edu	36	1	110947467	110947467	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004974	exon2	c.A1461G	p.T487T	.	.	.
FCRLB	127943	hgsc.bcm.edu	36	1	159959991	159959991	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001002901	exon3	c.G263A	p.R88Q	.	.	.
SPEN	23013	hgsc.bcm.edu	36	1	16072038	16072038	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015001	exon2	c.G224A	p.R75H	.	.	.
SPEN	23013	hgsc.bcm.edu	36	1	16130656	16130656	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015001	exon11	c.C5334T	p.D1778D	.	.	.
MAEL	84944	hgsc.bcm.edu	36	1	165253812	165253812	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032858	exon10	c.C1033T	p.R345C	.	.	.
PADI1	29943	hgsc.bcm.edu	36	1	17424901	17424901	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013358	exon5	c.G417T	p.W139C	.	.	.
ASTN1	460	hgsc.bcm.edu	36	1	175266611	175266611	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004319	exon4	c.T966A	p.S322S	.	.	.
C1orf125	126859	hgsc.bcm.edu	36	1	177770669	177770669	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_144696	exon25	c.G2980C	p.E994Q	.	.	.
ASPM	259266	hgsc.bcm.edu	36	1	195378536	195378536	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018136	exon3	c.G1469A	p.R490H	.	.	.
NFASC	23114	hgsc.bcm.edu	36	1	203219828	203219828	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001160331	exon20	c.G2554A	p.A852T	.	.	.
RAB3GAP2	25782	hgsc.bcm.edu	36	1	218391364	218391364	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012414	exon35	c.A4034G	p.Q1345R	.	.	.
HEATR1	55127	hgsc.bcm.edu	36	1	234827890	234827890	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018072	exon5	c.C514T	p.P172S	.	.	.
RGS7	6000	hgsc.bcm.edu	36	1	239044676	239044676	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002924	exon12	c.G808A	p.D270N	.	.	.
OR2L13	284521	hgsc.bcm.edu	36	1	246330066	246330066	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_175911	exon3	c.T766C	p.Y256H	.	.	.
TMEM57	55219	hgsc.bcm.edu	36	1	25697434	25697434	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018202	exon11	c.G1885A	p.A629T	.	.	.
WDTC1	23038	hgsc.bcm.edu	36	1	27493169	27493169	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015023	exon8	c.C732T	p.D244D	.	.	.
PUM1	9698	hgsc.bcm.edu	36	1	31182110	31182110	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001020658	exon21	c.G3402A	p.A1134A	.	.	.
YARS	8565	hgsc.bcm.edu	36	1	33019277	33019277	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003680	exon10	c.C1099T	p.R367W	.	.	.
CDCA8	55143	hgsc.bcm.edu	36	1	37938697	37938697	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018101	exon6	c.C340T	p.R114X	.	.	.
ST3GAL3	6487	hgsc.bcm.edu	36	1	44168425	44168425	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_174964	exon12	c.T1118C	p.F373S	.	.	.
YIPF1	54432	hgsc.bcm.edu	36	1	54104529	54104529	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018982	exon9	c.C763T	p.R255X	.	.	.
ZRANB2	9406	hgsc.bcm.edu	36	1	71310392	71310392	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005455	exon6	c.G513T	p.E171D	.	.	.
NEGR1	257194	hgsc.bcm.edu	36	1	71831101	71831101	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173808	exon6	c.C927T	p.S309S	.	.	.
MSH4	4438	hgsc.bcm.edu	36	1	76151160	76151160	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002440	exon20	c.A2811T	p.X937Y	.	.	.
ST6GALNAC5	81849	hgsc.bcm.edu	36	1	77301253	77301253	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030965	exon5	c.C785T	p.P262L	.	.	.
ANGPTL5	253935	hgsc.bcm.edu	36	11	101270854	101270854	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178127	exon8	c.T813C	p.F271F	.	.	.
CWF19L2	143884	hgsc.bcm.edu	36	11	106724985	106724985	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152434	exon14	c.A2090T	p.Y697F	.	.	.
ARHGAP20	57569	hgsc.bcm.edu	36	11	109984980	109984980	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020809	exon9	c.C713A	p.S238Y	.	.	.
DSCAML1	57453	hgsc.bcm.edu	36	11	116908318	116908318	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020693	exon4	c.C821T	p.A274V	.	.	.
HSPA8	3312	hgsc.bcm.edu	36	11	122437122	122437122	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153201	exon2	c.T121C	p.Y41H	.	.	.
OR10S1	219873	hgsc.bcm.edu	36	11	123353074	123353074	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001004474	exon1	c.C535T	p.R179C	.	.	.
VPS26B	112936	hgsc.bcm.edu	36	11	133615189	133615189	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052875	exon3	c.A475G	p.N159D	.	.	.
DCDC1	341019	hgsc.bcm.edu	36	11	31283776	31283776	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181807	exon6	c.C716T	p.T239M	.	.	.
TMEM41B	440026	hgsc.bcm.edu	36	11	9261711	9261711	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015012	exon7	c.G712A	p.A238T	.	.	.
CWF19L2	143884	hgsc.bcm.edu	36	11	106804913	106804915	+	In_Frame_Del	DEL	ATG	ATG	-	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	ATG	ATG	ATG	-	ATG	ATG	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152434	exon8	c.1253_1255del	p.418_419del	.	.	.
OR8I2	120586	hgsc.bcm.edu	36	11	55618147	55618148	+	Frame_Shift_Del	DEL	AC	AC	-	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	AC	AC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001003750	exon1	c.788_789del	p.263_263del	.	.	.
BVES	11149	hgsc.bcm.edu	36	6	105679145	105679145	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007073	exon5	c.A618G	p.S206S	.	.	.
PKIB	5570	hgsc.bcm.edu	36	6	123080758	123080758	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032471	exon3	c.C120T	p.D40D	.	.	.
C6orf58	352999	hgsc.bcm.edu	36	6	127943240	127943240	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001010905	exon3	c.C526T	p.R176C	.	.	.
PTPRK	5796	hgsc.bcm.edu	36	6	128602939	128602939	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002844	exon5	c.G627A	p.G209G	.	.	.
MAP7	9053	hgsc.bcm.edu	36	6	136735458	136735458	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001198609	exon8	c.A840G	p.S280S	.	.	.
SYNE1	23345	hgsc.bcm.edu	36	6	152673303	152673303	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015293	exon4	c.C512T	p.A171V	.	.	.
IGF2R	3482	hgsc.bcm.edu	36	6	160375509	160375509	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Visver			SOLID	NM_000876	exon10	c.T1280C	p.M427T	.	.	.
PLG	5340	hgsc.bcm.edu	36	6	161057723	161057723	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000301	exon7	c.G725A	p.R242Q	.	.	.
FAM120B	84498	hgsc.bcm.edu	36	6	170468617	170468617	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_032448	exon2	c.C214T	p.R72X	.	.	.
ZSCAN16	80345	hgsc.bcm.edu	36	6	28205614	28205614	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025231	exon4	c.A954C	p.K318N	.	.	.
SCAND3	114821	hgsc.bcm.edu	36	6	28651495	28651495	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052923	exon3	c.A966G	p.G322G	.	.	.
IBTK	25998	hgsc.bcm.edu	36	6	82990582	82990582	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015525	exon7	c.G865A	p.V289I	.	.	.
RNGTT	8732	hgsc.bcm.edu	36	6	89610844	89610844	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003800	exon11	c.C1220A	p.P407Q	.	.	.
PLXDC1	57125	hgsc.bcm.edu	36	17	34515683	34515683	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020405	exon7	c.C761T	p.T254I	.	.	.
KRT20	54474	hgsc.bcm.edu	36	17	36294793	36294793	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_019010	exon1	c.C171T	p.S57S	.	.	.
ACLY	47	hgsc.bcm.edu	36	17	37322285	37322285	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198830	exon3	c.C196T	p.R66C	.	.	.
EFTUD2	9343	hgsc.bcm.edu	36	17	40312478	40312478	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004247	exon9	c.T674C	p.V225A	.	.	.
CLTC	1213	hgsc.bcm.edu	36	17	55092663	55092663	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004859	exon7	c.A1099G	p.K367E	.	.	.
USP32	84669	hgsc.bcm.edu	36	17	55703574	55703574	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_032582	exon6	c.G622A	p.A208T	.	.	.
TMEM104	54868	hgsc.bcm.edu	36	17	70285087	70285087	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017728	exon2	c.C23T	p.T8I	.	.	.
GRB2	2885	hgsc.bcm.edu	36	17	70833631	70833631	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002086	exon4	c.G242T	p.G81V	.	.	.
DNAH2	146754	hgsc.bcm.edu	36	17	7581230	7581230	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020877	exon7	c.C1099T	p.L367F	.	.	.
FMNL1	752	hgsc.bcm.edu	36	17	40679470	40679472	+	In_Frame_Del	DEL	CAT	CAT	-	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	CAT	CAT	CAT	-	CAT	CAT	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005892	exon25	c.3201_3203del	p.1067_1068del	.	.	.
CLDN17	26285	hgsc.bcm.edu	36	21	30460293	30460293	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012131	exon1	c.G514A	p.A172T	.	.	.
KCNE1	3753	hgsc.bcm.edu	36	21	34743582	34743582	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127668	exon3	c.C221T	p.S74L	.	.	.
RCAN1	1827	hgsc.bcm.edu	36	21	34817836	34817836	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004414	exon2	c.A295G	p.T99A	.	.	.
TXNDC11	51061	hgsc.bcm.edu	36	16	11732073	11732073	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015914	exon4	c.C628T	p.R210C	.	.	.
MKL2	57496	hgsc.bcm.edu	36	16	14262446	14262446	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014048	exon17	c.C2794T	p.L932L	.	.	.
PALB2	79728	hgsc.bcm.edu	36	16	23548917	23548917	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_024675	exon5	c.C2059T	p.P687S	.	.	.
ABCC12	94160	hgsc.bcm.edu	36	16	46732185	46732185	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_033226	exon4	c.G571A	p.A191T	.	.	.
N-PAC	84656	hgsc.bcm.edu	36	16	4804566	4804566	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032569	exon11	c.C990T	p.C330C	.	.	.
NLRC5	84166	hgsc.bcm.edu	36	16	55646496	55646496	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032206	exon26	c.C3648T	p.G1216G	.	.	.
DDX19B	11269	hgsc.bcm.edu	36	16	68917008	68917008	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001014449	exon5	c.G196A	p.A66T	.	.	.
FANCA	2175	hgsc.bcm.edu	36	16	88404650	88404650	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000135	exon5	c.G488A	p.R163H	.	.	.
SS18	6760	hgsc.bcm.edu	36	18	21891638	21891638	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005637	exon4	c.C298T	p.R100C	.	.	.
DSG4	147409	hgsc.bcm.edu	36	18	27220729	27220729	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001134453	exon3	c.C165T	p.A55A	.	.	.
TTR	7276	hgsc.bcm.edu	36	18	27432559	27432559	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000371	exon4	c.C367T	p.R123C	.	.	.
TYMS	7298	hgsc.bcm.edu	36	18	662957	662957	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001071	exon7	c.A902G	p.Y301C	.	.	.
LAMA1	284217	hgsc.bcm.edu	36	18	7003899	7003899	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005559	exon23	c.A3278G	p.D1093G	.	.	.
ATP2B2	491	hgsc.bcm.edu	36	3	10345505	10345505	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001683	exon20	c.C3590T	p.S1197L	.	.	.
FBXO40	51725	hgsc.bcm.edu	36	3	122828380	122828380	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016298	exon4	c.G2063A	p.R688H	.	.	.
KPNA1	3836	hgsc.bcm.edu	36	3	123698062	123698062	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002264	exon2	c.A41G	p.Y14C	.	.	.
ACPL2	92370	hgsc.bcm.edu	36	3	142494569	142494569	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152282	exon8	c.C1275T	p.G425G	.	.	.
ATR	545	hgsc.bcm.edu	36	3	143667972	143667972	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001184	exon40	c.C6781T	p.P2261S	.	.	.
ATR	545	hgsc.bcm.edu	36	3	143694726	143694726	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001184	exon35	c.G6016T	p.V2006L	.	.	.
MED12L	116931	hgsc.bcm.edu	36	3	152385835	152385835	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_053002	exon11	c.C1523T	p.T508M	.	.	.
MBNL1	4154	hgsc.bcm.edu	36	3	153645783	153645783	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_207293	exon4	c.G572A	p.G191D	.	.	.
PTX3	5806	hgsc.bcm.edu	36	3	158643266	158643266	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002852	exon3	c.G950T	p.C317F	.	.	.
EVI1	2122	hgsc.bcm.edu	36	3	170331950	170331950	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001105077	exon4	c.G202A	p.E68K	.	.	.
XYLB	9942	hgsc.bcm.edu	36	3	38413609	38413609	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005108	exon17	c.A1393G	p.T465A	.	.	.
CCBP2	1238	hgsc.bcm.edu	36	3	42881149	42881149	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001296	exon3	c.G151T	p.V51F	.	.	.
SETD2	29072	hgsc.bcm.edu	36	3	47118019	47118019	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014159	exon8	c.T4948G	p.F1650V	.	.	.
MAGI1	9223	hgsc.bcm.edu	36	3	65347902	65347902	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015520	exon15	c.A2456T	p.E819V	.	.	.
FOXP1	27086	hgsc.bcm.edu	36	3	71104508	71104508	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032682	exon18	c.C1540T	p.R514C	.	.	.
C12orf59	120939	hgsc.bcm.edu	36	12	10230304	10230304	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153022	exon3	c.C96T	p.G32G	.	.	.
APPL2	55198	hgsc.bcm.edu	36	12	104107977	104107977	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018171	exon15	c.T1328C	p.L443P	.	.	.
PWP1	11137	hgsc.bcm.edu	36	12	106606641	106606641	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_007062	exon3	c.A251G	p.D84G	.	.	.
ACACB	32	hgsc.bcm.edu	36	12	108182761	108182761	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001093	exon47	c.C6590T	p.A2197V	.	.	.
ERC1	23085	hgsc.bcm.edu	36	12	1089643	1089643	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_178039	exon5	c.C1186T	p.R396C	.	.	.
FBXW8	26259	hgsc.bcm.edu	36	12	115907568	115907568	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_153348	exon6	c.C1010T	p.A337V	.	.	.
PTPRO	5800	hgsc.bcm.edu	36	12	15633698	15633698	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002848	exon24	c.G3369A	p.R1123R	.	.	.
KIAA0528	9847	hgsc.bcm.edu	36	12	22526891	22526891	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014802	exon14	c.G1604A	p.S535N	.	.	.
PDZRN4	29951	hgsc.bcm.edu	36	12	40247911	40247911	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001164595	exon9	c.G1527T	p.E509D	.	.	.
SPATS2	65244	hgsc.bcm.edu	36	12	48204841	48204841	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_023071	exon13	c.C1221A	p.A407A	.	.	.
STAT2	6773	hgsc.bcm.edu	36	12	55026528	55026528	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198332	exon21	c.G1997A	p.R666Q	.	.	.
MYO1A	4640	hgsc.bcm.edu	36	12	55723166	55723166	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005379	exon12	c.G1055A	p.R352H	.	.	.
SCNN1A	6337	hgsc.bcm.edu	36	12	6335242	6335242	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001159576	exon4	c.C1118A	p.S373Y	.	.	.
CAND1	55832	hgsc.bcm.edu	36	12	65982495	65982495	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018448	exon8	c.T1126C	p.S376P	.	.	.
CAND1	55832	hgsc.bcm.edu	36	12	65984772	65984772	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018448	exon9	c.C1414T	p.H472Y	.	.	.
CD163	9332	hgsc.bcm.edu	36	12	7531902	7531902	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_203416	exon7	c.G1469A	p.R490H	.	.	.
INO80	54617	hgsc.bcm.edu	36	15	39152950	39152950	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017553	exon11	c.G1363A	p.A455T	.	.	.
CAPN3	825	hgsc.bcm.edu	36	15	40489463	40489463	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_173089	exon4	c.G98A	p.R33H	.	.	.
ZSCAN29	146050	hgsc.bcm.edu	36	15	41443510	41443510	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152455	exon4	c.G1585T	p.A529S	.	.	.
FBN1	2200	hgsc.bcm.edu	36	15	46507916	46507916	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000138	exon57	c.C6916T	p.R2306C	.	.	.
ATP8B4	79895	hgsc.bcm.edu	36	15	48060757	48060757	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024837	exon11	c.A775G	p.S259G	.	.	.
TLN2	83660	hgsc.bcm.edu	36	15	60827911	60827911	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015059	exon30	c.C4095T	p.C1365C	.	.	.
RASGRF1	5923	hgsc.bcm.edu	36	15	77111663	77111663	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002891	exon7	c.G1009A	p.V337I	.	.	.
MTHFS	10588	hgsc.bcm.edu	36	15	77924654	77924654	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001199760	exon4	c.G493A	p.D165N	.	.	.
ADAMTSL3	57188	hgsc.bcm.edu	36	15	82450902	82450902	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_207517	exon23	c.C3905T	p.S1302F	.	.	.
QRFPR	84109	hgsc.bcm.edu	36	4	122470072	122470072	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_198179	exon6	c.T1143A	p.N381K	.	.	.
BOD1L	259282	hgsc.bcm.edu	36	4	13191886	13191886	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_148894	exon20	c.G8636A	p.R2879H	.	.	.
MMAA	166785	hgsc.bcm.edu	36	4	146779870	146779870	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_172250	exon2	c.G129A	p.P43P	.	.	.
FBXW7	55294	hgsc.bcm.edu	36	4	153468834	153468834	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018315	exon8	c.G1154A	p.R385H	FBXW7,large_intestine,NS,Substitution - Missense,0	.	.
CD38	952	hgsc.bcm.edu	36	4	15448861	15448861	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001775	exon5	c.C634T	p.R212C	.	.	.
CPE	1363	hgsc.bcm.edu	36	4	166608350	166608350	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001873	exon3	c.C565T	p.R189W	.	.	.
TLL1	7092	hgsc.bcm.edu	36	4	167133451	167133451	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_012464	exon3	c.A326G	p.Y109C	.	.	.
ANXA10	11199	hgsc.bcm.edu	36	4	169285882	169285882	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_007193	exon2	c.C91T	p.Q31X	.	.	.
GLRA3	8001	hgsc.bcm.edu	36	4	175873242	175873242	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001042543	exon5	c.A546G	p.V182V	.	.	.
FAM149A	25854	hgsc.bcm.edu	36	4	187323501	187323501	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001006655	exon10	c.C1053T	p.G351G	.	.	.
WDFY3	23001	hgsc.bcm.edu	36	4	86000650	86000650	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014991	exon4	c.G119A	p.R40Q	.	.	.
SPARCL1	8404	hgsc.bcm.edu	36	4	88631041	88631041	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001128310	exon7	c.C1305A	p.S435R	.	.	.
ACTRT1	139741	hgsc.bcm.edu	36	X	127012746	127012746	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138289	exon1	c.G1121A	p.R374K	.	.	.
RP13-102H20.1	158763	hgsc.bcm.edu	36	X	130043378	130043378	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_144967	exon2	c.C58T	p.P20S	.	.	.
SH3KBP1	30011	hgsc.bcm.edu	36	X	19623748	19623748	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001024666	exon4	c.C312T	p.N104N	.	.	.
OTC	5009	hgsc.bcm.edu	36	X	38152955	38152955	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000531	exon7	c.C680A	p.A227D	.	.	.
GPR174	84636	hgsc.bcm.edu	36	X	78313206	78313206	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_032553	exon1	c.G46T	p.D16Y	.	.	.
LRP1B	53353	hgsc.bcm.edu	36	2	140930547	140930547	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018557	exon62	c.T9910G	p.F3304V	.	.	.
ZEB2	9839	hgsc.bcm.edu	36	2	144873026	144873026	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001171653	exon7	c.T2126C	p.V709A	.	.	.
SCN1A	6323	hgsc.bcm.edu	36	2	166611653	166611653	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001165964	exon9	c.T1250C	p.L417S	.	.	.
TTN	7273	hgsc.bcm.edu	36	2	179319885	179319885	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133379	exon46	c.C15487T	p.R5163C	.	.	.
CERKL	375298	hgsc.bcm.edu	36	2	182117754	182117754	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_201548	exon11	c.G1283A	p.S428N	.	.	.
CASP8	841	hgsc.bcm.edu	36	2	201849934	201849934	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033356	exon6	c.C755T	p.A252V	.	.	.
RHBDD1	84236	hgsc.bcm.edu	36	2	227568420	227568420	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001167608	exon9	c.G886A	p.G296R	.	.	.
PID1	55022	hgsc.bcm.edu	36	2	229598632	229598632	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001100818	exon3	c.C614A	p.S205Y	.	.	.
DNMT3A	1788	hgsc.bcm.edu	36	2	25310662	25310662	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_175629	exon23	c.C2729T	p.A910V	.	.	.
PROKR1	10887	hgsc.bcm.edu	36	2	68735924	68735924	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138964	exon2	c.G894A	p.A298A	.	.	.
DYSF	8291	hgsc.bcm.edu	36	2	71761689	71761689	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001130982	exon54	c.G6093A	p.E2031E	.	.	.
ADAM17	6868	hgsc.bcm.edu	36	2	9594307	9594307	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003183	exon3	c.G332A	p.W111X	.	.	.
RNF20	56254	hgsc.bcm.edu	36	9	103349055	103349055	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_019592	exon7	c.G880T	p.E294X	.	.	.
TXNDC8	255220	hgsc.bcm.edu	36	9	112136354	112136354	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001003936	exon2	c.G92T	p.R31L	.	.	.
ANGPTL2	23452	hgsc.bcm.edu	36	9	128893931	128893931	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012098	exon4	c.G1121A	p.G374D	.	.	.
KIAA1539	80256	hgsc.bcm.edu	36	9	35096314	35096314	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_025182	exon6	c.G1153A	p.V385I	.	.	.
TRPM3	80036	hgsc.bcm.edu	36	9	72420750	72420750	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001007471	exon17	c.A2384G	p.D795G	.	.	.
GNA14	9630	hgsc.bcm.edu	36	9	79236145	79236145	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004297	exon4	c.G505A	p.V169M	.	.	.
SLC28A3	64078	hgsc.bcm.edu	36	9	86090269	86090269	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022127	exon15	c.C1458A	p.C486X	.	.	.
FANCC	2176	hgsc.bcm.edu	36	9	97051273	97051273	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000136	exon2	c.T122C	p.F41S	.	.	.
PTCH1	5727	hgsc.bcm.edu	36	9	97278213	97278213	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001083605	exon12	c.C1199T	p.T400M	.	.	.
ITGBL1	9358	hgsc.bcm.edu	36	13	100903190	100903190	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004791	exon1	c.G5A	p.R2H	.	.	.
ATP11A	23250	hgsc.bcm.edu	36	13	112487492	112487492	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015205	exon2	c.G82A	p.V28M	.	.	.
ATP12A	479	hgsc.bcm.edu	36	13	24162785	24162785	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001185085	exon7	c.G725A	p.R242H	.	.	.
RNF17	56163	hgsc.bcm.edu	36	13	24316896	24316896	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001184993	exon21	c.C2938T	p.R980X	.	.	.
N4BP2L1	90634	hgsc.bcm.edu	36	13	31875143	31875143	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052818	exon5	c.C668A	p.A223D	.	.	.
C13orf23	80209	hgsc.bcm.edu	36	13	38485542	38485542	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_170719	exon10	c.C1781A	p.P594H	.	.	.
UTP14C	9724	hgsc.bcm.edu	36	13	51502931	51502931	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_021645	exon2	c.C1990T	p.P664S	.	.	.
LMO7	4008	hgsc.bcm.edu	36	13	75276463	75276463	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005358	exon9	c.G855T	p.K285N	.	.	.
DNMBP	23268	hgsc.bcm.edu	36	10	101629632	101629632	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015221	exon16	c.G4474C	p.G1492R	.	.	.
SCD	6319	hgsc.bcm.edu	36	10	102106506	102106506	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005063	exon5	c.C875T	p.A292V	.	.	.
SFXN2	118980	hgsc.bcm.edu	36	10	104479543	104479543	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_178858	exon6	c.T581C	p.M194T	.	.	.
NT5C2	22978	hgsc.bcm.edu	36	10	104842946	104842946	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012229	exon15	c.C1099T	p.R367X	.	.	.
TACC2	10579	hgsc.bcm.edu	36	10	123961066	123961066	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006997	exon3	c.A1370G	p.D457G	.	.	.
CUBN	8029	hgsc.bcm.edu	36	10	17167696	17167696	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001081	exon16	c.G2016A	p.P672P	.	.	.
CSGALNACT2	55454	hgsc.bcm.edu	36	10	42970883	42970883	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018590	exon2	c.C280T	p.R94W	.	.	.
OGDHL	55753	hgsc.bcm.edu	36	10	50625209	50625209	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001143996	exon8	c.C868T	p.R290C	.	.	.
PBLD	64081	hgsc.bcm.edu	36	10	69718308	69718308	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001033083	exon8	c.C629A	p.A210E	.	.	.
ADAMTS14	140766	hgsc.bcm.edu	36	10	72138473	72138473	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_080722	exon4	c.A803G	p.D268G	.	.	.
OIT3	170392	hgsc.bcm.edu	36	10	74328654	74328654	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152635	exon2	c.C288T	p.G96G	.	.	.
FGFR2	2263	hgsc.bcm.edu	36	10	123264795	123264795	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001144916	exon6	c.T768C	p.A256A	.	.	.
SLCO6A1	133482	hgsc.bcm.edu	36	5	101737043	101737043	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_173488	exon13	c.A2072T	p.Y691F	.	.	.
HISPPD1	23262	hgsc.bcm.edu	36	5	102546913	102546913	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015216	exon24	c.G3002A	p.R1001H	.	.	.
CTNND2	1501	hgsc.bcm.edu	36	5	11041277	11041277	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001332	exon20	c.G3289A	p.A1097T	.	.	.
STARD4	134429	hgsc.bcm.edu	36	5	110863530	110863530	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_139164	exon6	c.G571A	p.A191T	.	.	.
KCNN2	3781	hgsc.bcm.edu	36	5	113768427	113768427	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_021614	exon3	c.G976A	p.A326T	.	.	.
FBN2	2201	hgsc.bcm.edu	36	5	127696541	127696541	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001999	exon32	c.G4184T	p.C1395F	.	.	.
ADAMTS19	171019	hgsc.bcm.edu	36	5	128985898	128985898	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133638	exon10	c.G1710A	p.Q570Q	.	.	.
DNAH5	1767	hgsc.bcm.edu	36	5	13822677	13822677	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001369	exon57	c.C9653T	p.A3218V	.	.	.
CSF1R	1436	hgsc.bcm.edu	36	5	149415837	149415837	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005211	exon19	c.G2499A	p.T833T	.	.	.
GRIA1	2890	hgsc.bcm.edu	36	5	153010170	153010170	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001114183	exon4	c.A548G	p.E183G	.	.	.
SOX30	11063	hgsc.bcm.edu	36	5	156998161	156998161	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178424	exon4	c.G1535A	p.R512H	.	.	.
CDH6	1004	hgsc.bcm.edu	36	5	31338091	31338091	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004932	exon6	c.G928A	p.G310S	.	.	.
GOLPH3	64083	hgsc.bcm.edu	36	5	32162452	32162452	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022130	exon4	c.C520T	p.R174W	.	.	.
ITGA1	3672	hgsc.bcm.edu	36	5	52240499	52240499	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181501	exon13	c.T1470C	p.F490F	.	.	.
MAP1B	4131	hgsc.bcm.edu	36	5	71527217	71527217	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005909	exon5	c.C2279T	p.P760L	.	.	.
IQGAP2	10788	hgsc.bcm.edu	36	5	76024937	76024937	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006633	exon31	c.A3907G	p.T1303A	.	.	.
HAVCR2	84868	hgsc.bcm.edu	36	5	156468526	156468528	+	In_Frame_Del	DEL	AGC	AGC	-	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	AGC	AGC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032782	exon1	c.45_47del	p.15_16del	.	.	.
TCL6	27004	hgsc.bcm.edu	36	14	95198751	95198751	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	.	.	.	.	.	.	.