Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
PDE1C	5137	hgsc.bcm.edu	36	7	31885163	31885163	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3553-01A-01W-0831-10	TCGA-AA-3553-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001191056	exon4	c.C396T	p.H132H	.	.	.
KCNH5	27133	hgsc.bcm.edu	36	14	62338934	62338934	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3553-01A-01W-0831-10	TCGA-AA-3553-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_172376	exon9	c.C1514T	p.A505V	.	.	.
VSX2	338917	hgsc.bcm.edu	36	14	73796127	73796127	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3553-01A-01W-0831-10	TCGA-AA-3553-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182894	exon4	c.G649A	p.A217T	.	.	.
PRAME	23532	hgsc.bcm.edu	36	22	21222401	21222401	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3553-01A-01W-0831-10	TCGA-AA-3553-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_206955	exon5	c.T700G	p.S234A	.	.	.
SYMPK	8189	hgsc.bcm.edu	36	19	51037415	51037415	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3553-01A-01W-0831-10	TCGA-AA-3553-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004819	exon9	c.G1020A	p.P340P	.	.	.
EMR1	2015	hgsc.bcm.edu	36	19	6875789	6875789	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3553-01A-01W-0831-10	TCGA-AA-3553-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001974	exon15	c.G1892A	p.R631Q	.	.	.
PTK2B	2185	hgsc.bcm.edu	36	8	27352502	27352502	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3553-01A-01W-0831-10	TCGA-AA-3553-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173176	exon19	c.G1681T	p.E561X	.	.	.
DNAJC16	23341	hgsc.bcm.edu	36	1	15766235	15766235	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3553-01A-01W-0831-10	TCGA-AA-3553-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015291	exon14	c.C1833G	p.Y611X	.	.	.
DAB1	1600	hgsc.bcm.edu	36	1	57529248	57529248	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3553-01A-01W-0831-10	TCGA-AA-3553-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_021080	exon4	c.G43A	p.A15T	.	.	.
GUCY1A2	2977	hgsc.bcm.edu	36	11	106152381	106152381	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3553-01A-01W-0831-10	TCGA-AA-3553-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000855	exon6	c.G1830A	p.P610P	.	.	.
GRIK4	2900	hgsc.bcm.edu	36	11	120191326	120191326	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3553-01A-01W-0831-10	TCGA-AA-3553-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014619	exon3	c.G277A	p.A93T	.	.	.
LAMA4	3910	hgsc.bcm.edu	36	6	112556905	112556905	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3553-01A-01W-0831-10	TCGA-AA-3553-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001105207	exon31	c.A4178G	p.Y1393C	.	.	.
PKHD1	5314	hgsc.bcm.edu	36	6	51876425	51876425	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3553-01A-01W-0831-10	TCGA-AA-3553-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_170724	exon43	c.G6925A	p.E2309K	.	.	.
BMP5	653	hgsc.bcm.edu	36	6	55847458	55847459	+	Frame_Shift_Del	DEL	AA	AA	-	novel	unknown	TCGA-AA-3553-01A-01W-0831-10	TCGA-AA-3553-10A-01W-0831-10	AA	AA	AA	-	AA	AA	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_021073	exon1	c.164_165del	p.55_55del	.	.	.
TP53	7157	hgsc.bcm.edu	36	17	7518937	7518937	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3553-01A-01W-0831-10	TCGA-AA-3553-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001126114	exon6	c.C637T	p.R213X	TP53,central_nervous_system,brain,Substitution - Missense,+1	.	.
PHKG2	5261	hgsc.bcm.edu	36	16	30672292	30672292	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3553-01A-01W-0831-10	TCGA-AA-3553-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001172432	exon6	c.G469A	p.E157K	.	.	.
ZFHX3	463	hgsc.bcm.edu	36	16	71549784	71549784	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3553-01A-01W-0831-10	TCGA-AA-3553-10A-01W-0831-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_006885	exon2	c.C1762A	p.L588M	.	.	.
HGD	3081	hgsc.bcm.edu	36	3	121834731	121834731	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3553-01A-01W-0831-10	TCGA-AA-3553-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000187	exon13	c.G1141C	p.A381P	.	.	.
NUP210	23225	hgsc.bcm.edu	36	3	13413876	13413876	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3553-01A-01W-0831-10	TCGA-AA-3553-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_024923	exon3	c.C417A	p.I139I	.	.	.
PLSCR2	57047	hgsc.bcm.edu	36	3	147654511	147654511	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3553-01A-01W-0831-10	TCGA-AA-3553-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020359	exon6	c.G451A	p.V151M	.	.	.
GLT1D1	144423	hgsc.bcm.edu	36	12	127939200	127939200	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3553-01A-01W-0831-10	TCGA-AA-3553-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144669	exon3	c.C281T	p.A94V	.	.	.
RIMBP2	23504	hgsc.bcm.edu	36	12	129458260	129458260	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3553-01A-01W-0831-10	TCGA-AA-3553-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015347	exon16	c.C2889T	p.Y963Y	.	.	.
LMBR1L	55716	hgsc.bcm.edu	36	12	47783747	47783747	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3553-01A-01W-0831-10	TCGA-AA-3553-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018113	exon6	c.G552A	p.E184E	.	.	.
HMG20A	10363	hgsc.bcm.edu	36	15	75537889	75537889	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3553-01A-01W-0831-10	TCGA-AA-3553-10A-01W-0831-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018200	exon3	c.A85T	p.T29S	.	.	.
LEF1	51176	hgsc.bcm.edu	36	4	109211327	109211327	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3553-01A-01W-0831-10	TCGA-AA-3553-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001166119	exon8	c.C769T	p.R257W	.	.	.
IL2	3558	hgsc.bcm.edu	36	4	123592400	123592400	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3553-01A-01W-0831-10	TCGA-AA-3553-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000586	exon4	c.G419T	p.R140I	.	.	.
STIM2	57620	hgsc.bcm.edu	36	4	26628649	26628649	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3553-01A-01W-0831-10	TCGA-AA-3553-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001169117	exon11	c.C1708T	p.L570F	.	.	.
ODZ1	10178	hgsc.bcm.edu	36	X	123615300	123615300	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3553-01A-01W-0831-10	TCGA-AA-3553-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014253	exon7	c.C1183T	p.R395W	.	.	.
MXRA5	25878	hgsc.bcm.edu	36	X	3251276	3251276	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3553-01A-01W-0831-10	TCGA-AA-3553-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015419	exon5	c.T2450C	p.V817A	.	.	.
TTN	7273	hgsc.bcm.edu	36	2	179347278	179347278	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3553-01A-01W-0831-10	TCGA-AA-3553-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_133379	exon30	c.C6958T	p.R2320C	.	.	.
SLC11A1	6556	hgsc.bcm.edu	36	2	218966020	218966020	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3553-01A-01W-0831-10	TCGA-AA-3553-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000578	exon12	c.G1237A	p.V413M	.	.	.
PTPDC1	138639	hgsc.bcm.edu	36	9	95900183	95900183	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3553-01A-01W-0831-10	TCGA-AA-3553-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152422	exon6	c.G1508A	p.S503N	.	.	.
DMRT3	58524	hgsc.bcm.edu	36	9	980868	980868	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3553-01A-01W-0831-10	TCGA-AA-3553-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_021240	exon2	c.C1282T	p.R428C	.	.	.
APC	324	hgsc.bcm.edu	36	5	112203134	112203134	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3553-01A-01W-0831-10	TCGA-AA-3553-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127511	exon14	c.C3890A	p.S1297X	APC,large_intestine,colon,Substitution - Nonsense,0	.	.
PFDN1	5201	hgsc.bcm.edu	36	5	139660295	139660295	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AA-3553-01A-01W-0831-10	TCGA-AA-3553-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002622	exon2	c.A90C	p.A30A	.	.	.
ADCY2	108	hgsc.bcm.edu	36	5	7759901	7759901	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3553-01A-01W-0831-10	TCGA-AA-3553-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020546	exon8	c.G1154A	p.G385D	.	.	.