Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
DRG2	1819	hgsc.bcm.edu	36	17	17932119	17932120	+	Frame_Shift_Ins	INS	-	-	AA	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001388	exon1	c.57_58insAA	p.K19fs	.	.	.
LAMB1	3912	hgsc.bcm.edu	36	7	107389318	107389318	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002291	exon16	c.C1897T	p.R633X	.	.	.
WNT2	7472	hgsc.bcm.edu	36	7	116705532	116705532	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003391	exon5	c.C996T	p.C332C	.	.	.
C7orf16	10842	hgsc.bcm.edu	36	7	31713381	31713381	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006658	exon5	c.G427A	p.V143M	.	.	.
ASXL1	171023	hgsc.bcm.edu	36	20	30480871	30480871	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015338	exon6	c.G541A	p.G181R	.	.	.
PLCG1	5335	hgsc.bcm.edu	36	20	39225272	39225272	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002660	exon8	c.G732A	p.P244P	.	.	.
NRXN3	9369	hgsc.bcm.edu	36	14	78251229	78251229	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004796	exon5	c.G919A	p.E307K	.	.	.
RHPN2	85415	hgsc.bcm.edu	36	19	38174696	38174696	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033103	exon13	c.C1517T	p.S506L	.	.	.
ITGB1BP3	27231	hgsc.bcm.edu	36	19	3892069	3892069	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_170678	exon7	c.T396C	p.S132S	.	.	.
SPTBN4	57731	hgsc.bcm.edu	36	19	45713100	45713100	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020971	exon15	c.C2808T	p.R936R	.	.	.
DMRTC2	63946	hgsc.bcm.edu	36	19	47043766	47043766	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001040283	exon3	c.G347T	p.G116V	.	.	.
PLA2G4C	8605	hgsc.bcm.edu	36	19	53299665	53299665	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001159323	exon4	c.A249C	p.G83G	.	.	.
TSKS	60385	hgsc.bcm.edu	36	19	54957155	54957155	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_021733	exon2	c.G317A	p.S106N	.	.	.
ZNF17	7565	hgsc.bcm.edu	36	19	62624557	62624557	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006959	exon3	c.C1885T	p.R629W	.	.	.
ZNF418	147686	hgsc.bcm.edu	36	19	63129546	63129546	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133460	exon4	c.G1815A	p.A605A	.	.	.
ZNF560	147741	hgsc.bcm.edu	36	19	9440831	9440832	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	CT	CT	CT	CT	CT	CT	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_152476	exon9	c.561_562del	p.187_188del	.	.	.
TAF2	6873	hgsc.bcm.edu	36	8	120823967	120823967	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003184	exon25	c.C3325T	p.R1109W	.	.	.
MYBPHL	343263	hgsc.bcm.edu	36	1	109641712	109641712	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001010985	exon3	c.C285G	p.D95E	.	.	.
PIAS3	10401	hgsc.bcm.edu	36	1	144289585	144289585	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006099	exon2	c.G191A	p.R64H	.	.	.
SELENBP1	8991	hgsc.bcm.edu	36	1	149608844	149608844	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003944	exon2	c.C30G	p.P10P	.	.	.
FCRL4	83417	hgsc.bcm.edu	36	1	155824508	155824508	+	Nonsense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_031282	exon4	c.T333G	p.Y111X	.	.	.
CSMD2	114784	hgsc.bcm.edu	36	1	33805919	33805919	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052896	exon54	c.C8172T	p.N2724N	.	.	.
ZMYM6	9204	hgsc.bcm.edu	36	1	35245228	35245228	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_007167	exon12	c.G1724A	p.R575Q	.	.	.
KANK4	163782	hgsc.bcm.edu	36	1	62501515	62501515	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181712	exon7	c.G2376A	p.S792S	.	.	.
TAGLN	6876	hgsc.bcm.edu	36	11	116579808	116579808	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003186	exon4	c.G459A	p.M153I	.	.	.
OR10G7	390265	hgsc.bcm.edu	36	11	123414502	123414502	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001004463	exon1	c.G417A	p.S139S	.	.	.
ST14	6768	hgsc.bcm.edu	36	11	129563293	129563293	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_021978	exon2	c.G156A	p.P52P	.	.	.
OR51B2	79345	hgsc.bcm.edu	36	11	5301624	5301624	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_033180	exon1	c.T480C	p.R160R	.	.	.
ALG8	79053	hgsc.bcm.edu	36	11	77512798	77512798	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001007027	exon3	c.G285T	p.L95F	.	.	.
F13A1	2162	hgsc.bcm.edu	36	6	6120034	6120034	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000129	exon12	c.A1525G	p.T509A	.	.	.
CDC27	996	hgsc.bcm.edu	36	17	42574254	42574254	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001114091	exon12	c.T1533C	p.I511I	.	.	.
ZNF232	7775	hgsc.bcm.edu	36	17	4949888	4949888	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014519	exon5	c.C1290T	p.L430L	.	.	.
TP53	7157	hgsc.bcm.edu	36	17	7517846	7517846	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon8	c.C817T	p.R273C	TP53,central_nervous_system,brain,Substitution - Missense,0	.	.
KRTAP6-2	337967	hgsc.bcm.edu	36	21	30893004	30893004	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_181604	exon1	c.G61A	p.E21K	.	.	.
GP2	2813	hgsc.bcm.edu	36	16	20241744	20241744	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001007242	exon3	c.T153A	p.L51L	.	.	.
GTF3C1	2975	hgsc.bcm.edu	36	16	27403067	27403067	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001520	exon25	c.A3967C	p.I1323L	.	.	.
ZNF521	25925	hgsc.bcm.edu	36	18	21060391	21060391	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015461	exon4	c.C1489T	p.R497X	.	.	.
LAMA1	284217	hgsc.bcm.edu	36	18	7039146	7039146	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005559	exon5	c.G699A	p.T233T	.	.	.
GOLGB1	2804	hgsc.bcm.edu	36	3	122897178	122897178	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004487	exon13	c.G4867C	p.E1623Q	.	.	.
DZIP1L	199221	hgsc.bcm.edu	36	3	139294053	139294053	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001170538	exon6	c.G732A	p.R244R	.	.	.
EPHA3	2042	hgsc.bcm.edu	36	3	89563102	89563102	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005233	exon13	c.G2249A	p.R750Q	.	.	.
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004985	exon2	c.G35A	p.G12D	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.
LPAR5	57121	hgsc.bcm.edu	36	12	6600609	6600609	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020400	exon2	c.C67T	p.R23C	.	.	.
TRPV4	59341	hgsc.bcm.edu	36	12	108736888	108736888	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_021625	exon2	c.C97T	p.L33F	.	.	.
SNX1	6642	hgsc.bcm.edu	36	15	62191864	62191864	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003099	exon2	c.C199G	p.P67A	.	.	.
NFKB1	4790	hgsc.bcm.edu	36	4	103733682	103733682	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001165412	exon12	c.G1126A	p.G376S	.	.	.
NCAPG	64151	hgsc.bcm.edu	36	4	17451409	17451409	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_022346	exon19	c.A2849T	p.N950I	.	.	.
EVC2	132884	hgsc.bcm.edu	36	4	5675189	5675189	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001166136	exon14	c.G2237A	p.R746Q	.	.	.
CRMP1	1400	hgsc.bcm.edu	36	4	5881198	5881198	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001313	exon12	c.C1380T	p.N460N	.	.	.
TMEM215	401498	hgsc.bcm.edu	36	9	32774370	32774370	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_212558	exon2	c.C189T	p.T63T	.	.	.
TUBGCP2	10844	hgsc.bcm.edu	36	10	134953358	134953358	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006659	exon9	c.G1320A	p.P440P	.	.	.
FRMPD2	143162	hgsc.bcm.edu	36	10	49070788	49070788	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001018071	exon16	c.G2110T	p.D704Y	.	.	.
APC	324	hgsc.bcm.edu	36	5	112201816	112201816	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001127511	exon14	c.C2572T	p.R858X	APC,large_intestine,NS,Substitution - Nonsense,0	.	.
LMNB1	4001	hgsc.bcm.edu	36	5	126168472	126168472	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005573	exon2	c.C465G	p.D155E	.	.	.
PCDHB10	56126	hgsc.bcm.edu	36	5	140553012	140553012	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018930	exon1	c.G703A	p.V235I	.	.	.
SCGB3A2	117156	hgsc.bcm.edu	36	5	147241366	147241366	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_054023	exon2	c.C220T	p.L74L	.	.	.
PDE6A	5145	hgsc.bcm.edu	36	5	149290876	149290876	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000440	exon4	c.G766A	p.E256K	.	.	.
GABRG2	2566	hgsc.bcm.edu	36	5	161501759	161501759	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_198904	exon7	c.G781T	p.V261F	.	.	.
ADAMTS12	81792	hgsc.bcm.edu	36	5	33585144	33585144	+	Silent	SNP	G	G	A	rs61748195	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_030955	exon21	c.C4227T	p.A1409A	.	.	.
CARD6	84674	hgsc.bcm.edu	36	5	40890281	40890281	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032587	exon3	c.G3090A	p.G1030G	.	.	.
MAP1B	4131	hgsc.bcm.edu	36	5	71528916	71528916	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005909	exon5	c.C3978T	p.S1326S	.	.	.