Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target DOCK1 1793 broad.mit.edu 36 10 129073144 129073144 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001380 exon38 c.A3845G p.H1282R . . . GDF10 2662 broad.mit.edu 36 10 48048882 48048882 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004962 exon2 c.G1010A p.R337H . . . CALML5 51806 broad.mit.edu 36 10 5531064 5531064 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_017422 exon1 c.C338T p.P113L . . . BICC1 80114 broad.mit.edu 36 10 59943055 59943055 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001080512 exon1 c.A146G p.E49G . . . STOX1 219736 broad.mit.edu 36 10 70315066 70315066 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_152709 exon3 c.G1508A p.R503Q . . . DLG5 9231 broad.mit.edu 36 10 79246430 79246430 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_004747 exon20 c.C3910T p.Q1304X . . . KIF20B 9585 broad.mit.edu 36 10 91488328 91488328 + Silent SNP A G G novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_016195 exon20 c.A3630G p.E1210E . . . BMPR1A 657 broad.mit.edu 36 10 88639961 88639961 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004329 exon4 c.230delT p.I77fs . . . ATM 472 broad.mit.edu 36 11 107719197 107719197 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_000051 exon57 c.G8307A p.W2769X . . . OR6M1 390261 broad.mit.edu 36 11 123181892 123181892 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001005325 exon1 c.G376A p.D126N . . . FAM118B 79607 broad.mit.edu 36 11 125629514 125629514 + Silent SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_024556 exon6 c.C672T p.N224N . . . OR10AG1 282770 broad.mit.edu 36 11 55492179 55492179 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001005491 exon1 c.C337T p.R113C . . . PRG2 5553 broad.mit.edu 36 11 56913314 56913314 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_002728 exon3 c.G111T p.E37D . . . SLC43A1 8501 broad.mit.edu 36 11 57024895 57024895 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003627 exon5 c.C398T p.P133L . . . TMEM216 51259 broad.mit.edu 36 11 60921958 60921958 + Silent SNP C A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_016499 exon4 c.C183A p.G61G . . . SMPD1 6609 broad.mit.edu 36 11 6369742 6369742 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001007593 exon2 c.C868A p.R290S . . . ACTN3 89 broad.mit.edu 36 11 66075660 66075660 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001104 exon3 c.C348A p.S116R . . . NOX4 50507 broad.mit.edu 36 11 88712884 88712884 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_016931 exon15 c.A1441G p.N481D . . . ATM 472 broad.mit.edu 36 11 107710974 107710976 + In_Frame_Del DEL AGG - - novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 AGG AGG AGG - AGG AGG Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_000051 exon55 c.8079_8081del p.2693_2694del . . . CLEC7A 64581 broad.mit.edu 36 12 10162443 10162443 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_022570 exon5 c.A487G p.T163A . . . TAS2R10 50839 broad.mit.edu 36 12 10869904 10869904 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_023921 exon1 c.G232A p.G78S . . . DTX1 1840 broad.mit.edu 36 12 111999661 111999661 + Silent SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004416 exon2 c.G309A p.P103P . . . CLIP1 6249 broad.mit.edu 36 12 121387222 121387222 + Silent SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_198240 exon10 c.G2340A p.Q780Q . . . DNAH10 196385 broad.mit.edu 36 12 122969231 122969231 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_207437 exon64 c.G10934A p.R3645Q . . . GPR19 2842 broad.mit.edu 36 12 12706312 12706312 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_006143 exon4 c.T338C p.L113P . . . SLC38A2 54407 broad.mit.edu 36 12 45042571 45042571 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018976 exon14 c.A1297G p.T433A . . . GALNT8 26290 broad.mit.edu 36 12 4744900 4744900 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_017417 exon10 c.C1688T p.A563V . . . KRT80 144501 broad.mit.edu 36 12 50871906 50871906 + Silent SNP A G G novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_182507 exon1 c.T48C p.C16C . . . SP1 6667 broad.mit.edu 36 12 52063536 52063536 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_138473 exon3 c.C1538T p.A513V . . . GPR84 53831 broad.mit.edu 36 12 53043742 53043742 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_020370 exon2 c.G161A p.R54Q . . . OR6C76 390326 broad.mit.edu 36 12 54107010 54107010 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001005183 exon1 c.T706C p.S236P . . . VWF 7450 broad.mit.edu 36 12 5965012 5965012 + Silent SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000552 exon39 c.G6879A p.T2293T . . . MSRB3 253827 broad.mit.edu 36 12 63988657 63988657 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001193461 exon2 c.A31T p.T11S . . . TUBA3C 7278 broad.mit.edu 36 13 18650431 18650431 + Silent SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006001 exon3 c.C330T p.I110I . . . POSTN 10631 broad.mit.edu 36 13 37062595 37062595 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001135934 exon4 c.G355A p.A119T . . . NHLRC3 387921 broad.mit.edu 36 13 38519992 38519992 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001017370 exon6 c.G772C p.A258P . . . UTP14C 9724 broad.mit.edu 36 13 51501877 51501877 + Silent SNP C A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_021645 exon2 c.C936A p.A312A . . . TBC1D4 9882 broad.mit.edu 36 13 74834235 74834235 + Silent SNP T C C novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014832 exon2 c.A1008G p.R336R . . . AHNAK2 113146 broad.mit.edu 36 14 104483308 104483308 + Silent SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_138420 exon7 c.C9525T p.A3175A . . . OR4M1 441670 broad.mit.edu 36 14 19318932 19318932 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001005500 exon1 c.G611T p.G204V . . . HEATR5A 25938 broad.mit.edu 36 14 30926191 30926191 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_015473 exon2 c.C196T p.R66C . . . SPTLC2 9517 broad.mit.edu 36 14 77048441 77048441 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004863 exon12 c.G1628T p.R543L . . . C14orf102 55051 broad.mit.edu 36 14 89826682 89826682 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_017970 exon10 c.A1865G p.Q622R . . . COX8C 341947 broad.mit.edu 36 14 92883440 92883440 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_182971 exon1 c.G73A p.A25T . . . MAGEL2 54551 broad.mit.edu 36 15 21441891 21441891 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_019066 exon1 c.G2092A p.G698R . . . UNC13C 440279 broad.mit.edu 36 15 52095297 52095297 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001080534 exon1 c.C2905T p.R969C . . . NTRK3 4916 broad.mit.edu 36 15 86479593 86479593 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001007156 exon9 c.G947A p.R316H . . . LASS3 204219 broad.mit.edu 36 15 98842359 98842359 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_178842 exon6 c.C326T p.T109M . . . SBK1 388228 broad.mit.edu 36 16 28239033 28239033 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001024401 exon4 c.C565T p.R189C . . . ZNF423 23090 broad.mit.edu 36 16 48227850 48227850 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_015069 exon5 c.G2714A p.R905Q . . . GPR97 222487 broad.mit.edu 36 16 56271941 56271941 + Silent SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_170776 exon8 c.G792A p.T264T . . . CDH8 1006 broad.mit.edu 36 16 60409002 60409002 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C C G C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001796 exon7 c.G1159C p.E387Q . . . CDH8 1006 broad.mit.edu 36 16 60412422 60412422 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001796 exon6 c.C932T p.S311L . . . KCTD19 146212 broad.mit.edu 36 16 65883102 65883102 + Silent SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001100915 exon13 c.G2358A p.T786T . . . COX4I1 1327 broad.mit.edu 36 16 84396941 84396941 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001861 exon4 c.G343A p.A115T . . . ANKRD11 29123 broad.mit.edu 36 16 87874034 87874034 + Silent SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_013275 exon9 c.G6417A p.P2139P . . . PROCA1 147011 broad.mit.edu 36 17 24054918 24054918 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_152465 exon4 c.G796A p.E266K . . . C17orf97 400566 broad.mit.edu 36 17 263542 263542 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001013672 exon2 c.C592T p.R198W . . . LPO 4025 broad.mit.edu 36 17 53698597 53698597 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006151 exon11 c.G1604A p.R535H . . . RAD51C 5889 broad.mit.edu 36 17 54156429 54156429 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_058216 exon7 c.C934T p.R312W . . . KCNH6 81033 broad.mit.edu 36 17 58966962 58966962 + Silent SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_030779 exon6 c.C1302T p.I434I . . . SDK2 54549 broad.mit.edu 36 17 68926986 68926986 + Silent SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001144952 exon16 c.C2100T p.S700S . . . MARCH10 162333 broad.mit.edu 36 17 58191020 58191020 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G G - G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001100875 exon4 c.290delC p.P97fs . . . PPP4R1 9989 broad.mit.edu 36 18 9539240 9539240 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001042388 exon19 c.C2644T p.R882X . . . SLC44A2 57153 broad.mit.edu 36 19 10603577 10603577 + Silent SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020428 exon9 c.C660T p.L220L . . . ZNF682 91120 broad.mit.edu 36 19 19979011 19979011 + Silent SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_033196 exon4 c.G300A p.L100L . . . ZNF536 9745 broad.mit.edu 36 19 35626761 35626761 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_014717 exon2 c.C452T p.T151M . . . SLC7A10 56301 broad.mit.edu 36 19 38395621 38395621 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_019849 exon3 c.C484T p.R162W . . . NPHS1 4868 broad.mit.edu 36 19 41030847 41030847 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004646 exon11 c.C1376A p.T459N . . . DHX34 9704 broad.mit.edu 36 19 52568703 52568703 + Silent SNP G C C novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014681 exon9 c.G2010C p.R670R . . . HAS1 3036 broad.mit.edu 36 19 56911364 56911364 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001523 exon4 c.C1018T p.R340W . . . LAIR1 3903 broad.mit.edu 36 19 59558713 59558713 + Silent SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_021706 exon9 c.G789A p.T263T . . . RFX2 5990 broad.mit.edu 36 19 5991251 5991251 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000635 exon5 c.C262T p.R88X . . . ZFP28 140612 broad.mit.edu 36 19 61753285 61753285 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_020828 exon6 c.G725A p.R242H . . . ZNF135 7694 broad.mit.edu 36 19 63264769 63264769 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_003436 exon3 c.A43G p.T15A . . . RAB11B 9230 broad.mit.edu 36 19 8370842 8370842 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_004218 exon2 c.G136A p.V46M . . . COL5A3 50509 broad.mit.edu 36 19 9952774 9952774 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_015719 exon33 c.G2495A p.R832Q . . . TTC24 164118 broad.mit.edu 36 1 154819467 154819467 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001105669 exon4 c.G920A p.G307E . . . VANGL2 57216 broad.mit.edu 36 1 158655985 158655985 + Silent SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020335 exon4 c.C762T p.T254T . . . BAT2L2 23215 broad.mit.edu 36 1 169768401 169768401 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_015172 exon12 c.G1544A p.R515H . . . ASTN1 460 broad.mit.edu 36 1 175184979 175184979 + Silent SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004319 exon12 c.C2019T p.D673D . . . FAM5C 339479 broad.mit.edu 36 1 188334737 188334737 + Silent SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_199051 exon8 c.C1335T p.D445D . . . G0S2 50486 broad.mit.edu 36 1 207915844 207915844 + Silent SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015714 exon2 c.G192A p.A64A . . . RD3 343035 broad.mit.edu 36 1 209719152 209719152 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001164688 exon3 c.C437T p.P146L . . . KCNK2 3776 broad.mit.edu 36 1 213412146 213412146 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001017424 exon5 c.G808T p.A270S . . . HSPG2 3339 broad.mit.edu 36 1 22078087 22078087 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_005529 exon18 c.G2458A p.D820N . . . NLRP3 114548 broad.mit.edu 36 1 245674681 245674681 + Silent SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004895 exon8 c.C2946T p.G982G . . . CSMD2 114784 broad.mit.edu 36 1 34085156 34085156 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_052896 exon6 c.G829A p.V277I . . . CLSPN 63967 broad.mit.edu 36 1 35989584 35989584 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001190481 exon9 c.T1690C p.F564L . . . RSPO1 284654 broad.mit.edu 36 1 37867916 37867916 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001038633 exon4 c.G5A p.R2Q . . . SMAP2 64744 broad.mit.edu 36 1 40646957 40646957 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001198979 exon3 c.G268A p.A90T . . . HPDL 84842 broad.mit.edu 36 1 45565857 45565857 + Silent SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032756 exon1 c.C450T p.S150S . . . ZYG11B 79699 broad.mit.edu 36 1 53009534 53009534 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_024646 exon3 c.G451A p.E151K . . . CCBL2 56267 broad.mit.edu 36 1 89226604 89226604 + Silent SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001008661 exon2 c.G18A p.R6R . . . XRN2 22803 broad.mit.edu 36 20 21262590 21262590 + Silent SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_012255 exon12 c.C1083T p.D361D . . . C20orf185 359710 broad.mit.edu 36 20 31116138 31116138 + Silent SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_182658 exon8 c.C750T p.I250I . . . C20orf71 128861 broad.mit.edu 36 20 31275418 31275418 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_178466 exon2 c.C268A p.Q90K . . . TGM2 7052 broad.mit.edu 36 20 36208591 36208591 + Silent SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_198951 exon6 c.C801T p.H267H . . . NTSR1 4923 broad.mit.edu 36 20 60856570 60856570 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_002531 exon2 c.G803A p.R268H . . . IL17RA 23765 broad.mit.edu 36 22 15969845 15969845 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 T T T T T T Unknown Wildtype None Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_014339 exon13 c.T1736G p.V579G . . . EIF4ENIF1 56478 broad.mit.edu 36 22 30189896 30189896 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_019843 exon5 c.G356A p.R119Q . . . PARVB 29780 broad.mit.edu 36 22 42860220 42860220 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001003828 exon7 c.C730T p.R244W . . . CCDC138 165055 broad.mit.edu 36 2 108859080 108859080 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_144978 exon15 c.C1937T p.S646L . . . MARCO 8685 broad.mit.edu 36 2 119467210 119467210 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_006770 exon16 c.C1293A p.N431K . . . KIF5C 3800 broad.mit.edu 36 2 149562031 149562031 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_004522 exon17 c.G1959A p.M653I . . . PTH2R 5746 broad.mit.edu 36 2 209016388 209016388 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_005048 exon6 c.A580T p.I194F . . . IGFBP2 3485 broad.mit.edu 36 2 217236965 217236965 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_000597 exon4 c.G871A p.G291R . . . CRIM1 51232 broad.mit.edu 36 2 36560219 36560219 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_016441 exon7 c.G1250A p.R417Q . . . ATP6V1B1 525 broad.mit.edu 36 2 71043881 71043881 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001692 exon10 c.C991T p.R331W . . . DCTN1 1639 broad.mit.edu 36 2 74447479 74447479 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_023019 exon16 c.G2003A p.R668Q . . . CTNNA2 1496 broad.mit.edu 36 2 79990372 79990372 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_004389 exon7 c.G997A p.V333M . . . CBLB 868 broad.mit.edu 36 3 106895122 106895122 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_170662 exon13 c.G1960A p.V654I . . . WNT7A 7476 broad.mit.edu 36 3 13891502 13891502 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_004625 exon2 c.C241T p.R81C . . . ATR 545 broad.mit.edu 36 3 143760198 143760198 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001184 exon8 c.G1843A p.A615T . . . MCCC1 56922 broad.mit.edu 36 3 184239570 184239570 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020166 exon12 c.G1315A p.V439M . . . CNTN4 152330 broad.mit.edu 36 3 3053980 3053980 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_175613 exon9 c.G1076A p.R359H . . . SUSD5 26032 broad.mit.edu 36 3 33169399 33169399 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_015551 exon5 c.G1729A p.A577T . . . ITPR1 3708 broad.mit.edu 36 3 4678815 4678815 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001099952 exon15 c.C1301T p.P434L . . . SMARCC1 6599 broad.mit.edu 36 3 47626743 47626743 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003074 exon26 c.G2860A p.A954T . . . CXXC4 80319 broad.mit.edu 36 4 105631544 105631544 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_025212 exon1 c.T358G p.S120A . . . ENPEP 2028 broad.mit.edu 36 4 111693981 111693981 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001977 exon18 c.C2563T p.R855X . . . TUBB4Q 56604 broad.mit.edu 36 4 191140990 191140990 + Silent SNP C T T rs4277823 unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020040 exon4 c.G985A p.D329N . . . UGDH 7358 broad.mit.edu 36 4 39188744 39188744 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001184701 exon3 c.C106T p.P36S . . . EPHA5 2044 broad.mit.edu 36 4 65872493 65872493 + Silent SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004439 exon18 c.G3048A p.Q1016Q . . . HERC5 51191 broad.mit.edu 36 4 89644460 89644460 + Silent SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_016323 exon21 c.G2637A p.A879A . . . BMPR1B 658 broad.mit.edu 36 4 96244674 96244674 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001203 exon4 c.C76T p.R26C . . . PIK3R1 5295 broad.mit.edu 36 5 67558530 67558531 + Frame_Shift_Ins INS - CA CA novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 - - - CA - - Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_181523 exon1 c.271_272insCA p.P91fs . . . AQPEP 206338 broad.mit.edu 36 5 115348226 115348226 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_173800 exon3 c.C899T p.T300M . . . RAD50 10111 broad.mit.edu 36 5 131952396 131952396 + Silent SNP A G G novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005732 exon8 c.A1170G p.E390E . . . KIF3A 11127 broad.mit.edu 36 5 132079468 132079468 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_007054 exon8 c.C1009T p.R337W . . . PCDHGA9 56107 broad.mit.edu 36 5 140763355 140763355 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_018921 exon1 c.G652A p.G218S . . . AGXT2L2 85007 broad.mit.edu 36 5 177584979 177584979 + De_novo_Start_OutOfFrame SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_153373 exon4 c.C396T p.D132D . . . ADAMTS12 81792 broad.mit.edu 36 5 33611990 33611990 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_030955 exon19 c.C3898A p.L1300I . . . C5orf42 65250 broad.mit.edu 36 5 37216032 37216032 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_023073 exon28 c.A5581G p.T1861A . . . NAIP 4671 broad.mit.edu 36 5 70344159 70344159 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_004536 exon4 c.A340G p.I114V . . . RASA1 5921 broad.mit.edu 36 5 86600315 86600338 + In_Frame_Del DEL TGCTGCTGCTGGCGTGGCCGGTGC - - novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 TGCTGCTGCTGGCGTGGCCGGTGC TGCTGCTGCTGGCGTGGCCGGTGC TGCTGCTGCTGGCGTGGCCGGTGC - TGCTGCTGCTGGCGTGGCCGGTGC TGCTGCTGCTGGCGTGGCCGGTGC Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_002890 exon1 c.291_314del p.97_105del . . . TBC1D7 51256 broad.mit.edu 36 6 13414708 13414708 + Silent SNP A G G novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001143965 exon7 c.T696C p.C232C . . . TCF21 6943 broad.mit.edu 36 6 134252414 134252414 + Silent SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_198392 exon1 c.G186A p.A62A . . . HIVEP2 3097 broad.mit.edu 36 6 143133201 143133201 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_006734 exon5 c.G4368T p.Q1456H . . . SYNE1 23345 broad.mit.edu 36 6 152771934 152771934 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_033071 exon44 c.A6523G p.K2175E . . . HFE 3077 broad.mit.edu 36 6 26199288 26199288 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_139004 exon2 c.T317G p.M106R . . . DHX16 8449 broad.mit.edu 36 6 30732174 30732174 + Silent SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003587 exon15 c.C2403T p.A801A . . . ABCC10 89845 broad.mit.edu 36 6 43508965 43508965 + Silent SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001198934 exon3 c.C1269T p.F423F . . . TFAP2D 83741 broad.mit.edu 36 6 50794766 50794766 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_172238 exon3 c.C542A p.S181Y . . . NDUFAF4 29078 broad.mit.edu 36 6 97445937 97445937 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_014165 exon3 c.G292A p.D98N . . . VARS2 57176 broad.mit.edu 36 6 31000115 31000115 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 T T T - T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001167733 exon25 c.2052delT p.A684fs . . . CUX1 1523 broad.mit.edu 36 7 101632041 101632041 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_181552 exon18 c.C2744T p.P915L . . . RELN 5649 broad.mit.edu 36 7 102994036 102994036 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_005045 exon33 c.C4807A p.Q1603K . . . PLXNA4 91584 broad.mit.edu 36 7 131465784 131465784 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_020911 exon32 c.C5679A p.D1893E . . . BRAF 673 broad.mit.edu 36 7 140099605 140099605 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_004333 exon15 c.T1799A p.V600E BRAF,pituitary,NS,Substitution - Missense,0 . . HDAC9 9734 broad.mit.edu 36 7 18982021 18982021 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_178423 exon25 c.G3081T p.L1027F . . . GRM3 2913 broad.mit.edu 36 7 86253812 86253812 + Silent SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000840 exon3 c.C768T p.Y256Y . . . CCDC132 55610 broad.mit.edu 36 7 92721130 92721130 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_024553 exon4 c.T247A p.L83M . . . LRP12 29967 broad.mit.edu 36 8 105579306 105579306 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_013437 exon5 c.A650C p.Y217S . . . MYOM2 9172 broad.mit.edu 36 8 2029300 2029300 + Silent SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003970 exon17 c.C2100T p.D700D . . . NEFM 4741 broad.mit.edu 36 8 24831403 24831403 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001105541 exon3 c.G1002T p.K334N . . . CSMD1 64478 broad.mit.edu 36 8 2955133 2955133 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_033225 exon43 c.T6563G p.L2188R . . . TOX 9760 broad.mit.edu 36 8 59913385 59913385 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_014729 exon5 c.A733G p.K245E . . . SPAG11B 10407 broad.mit.edu 36 8 7307657 7307657 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_058200 exon2 c.C196T p.R66C . . . RUNX1T1 862 broad.mit.edu 36 8 93057346 93057346 + Silent SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001198626 exon11 c.G1311A p.A437A . . . MTERFD1 51001 broad.mit.edu 36 8 97327268 97327268 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015942 exon6 c.T893A p.M298K . . . COL15A1 1306 broad.mit.edu 36 9 100825532 100825532 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001855 exon14 c.G1834A p.G612S . . . DBC1 1620 broad.mit.edu 36 9 120969830 120969830 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_014618 exon8 c.C1639T p.R547C . . . SARDH 1757 broad.mit.edu 36 9 135563258 135563258 + Missense_Mutation SNP C T T rs35699831 unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_007101 exon11 c.G1442A p.R481H . . . CNTLN 54875 broad.mit.edu 36 9 17454498 17454498 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_017738 exon21 c.A3408G p.I1136M . . . GNE 10020 broad.mit.edu 36 9 36239330 36239330 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001128227 exon2 c.G116A p.R39Q . . . C9orf150 286343 broad.mit.edu 36 9 12765862 12765870 + In_Frame_Del DEL GGCGGCGGC - - novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 GGCGGCGGC GGCGGCGGC GGCGGCGGC - GGCGGCGGC GGCGGCGGC Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_203403 exon1 c.148_156del p.50_52del . . . TIMM17B 10245 broad.mit.edu 36 X 48636430 48636431 + Frame_Shift_Ins INS - C C novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 - - - - - - Unknown Wildtype None Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_005834 exon5 c.213_214insG p.G71fs . . . CHRDL1 91851 broad.mit.edu 36 X 109889617 109889617 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 G G A A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001143981 exon4 c.C229T p.R77X . . . MXRA5 25878 broad.mit.edu 36 X 3258773 3258773 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3664-01A-01W-0900-09 TCGA-AA-3664-10A-01W-0900-09 C C C G C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_015419 exon3 c.G230C p.G77A . . .