Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target PYROXD2 84795 broad.mit.edu 36 10 100142242 100142242 + Silent SNP C T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032709 exon10 c.G999A p.V333V . . . CHST15 51363 broad.mit.edu 36 10 125795620 125795620 + Silent SNP C T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015892 exon2 c.G99A p.A33A . . . GJD4 219770 broad.mit.edu 36 10 35936727 35936727 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_153368 exon2 c.G280A p.V94I . . . TMEM72 643236 broad.mit.edu 36 10 44750225 44750225 + Silent SNP C T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001123376 exon5 c.C465T p.S155S . . . RBP3 5949 broad.mit.edu 36 10 48010220 48010220 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_002900 exon1 c.G664A p.G222S . . . ERCC6 2074 broad.mit.edu 36 10 50354295 50354295 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_000124 exon12 c.T2354A p.V785D . . . OGDHL 55753 broad.mit.edu 36 10 50629888 50629888 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001143996 exon5 c.G569A p.R190H . . . FBXO18 84893 broad.mit.edu 36 10 5996163 5996163 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C C G C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_032807 exon9 c.C1474G p.L492V . . . PRKCQ 5588 broad.mit.edu 36 10 6510310 6510310 + Silent SNP G A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006257 exon18 c.C1986T p.S662S . . . LRRTM3 347731 broad.mit.edu 36 10 68357743 68357743 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_178011 exon2 c.G1063T p.V355L . . . CADM1 23705 broad.mit.edu 36 11 114554606 114554606 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_014333 exon9 c.T1178C p.I393T . . . AMICA1 120425 broad.mit.edu 36 11 117576399 117576399 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_153206 exon6 c.G881T p.S294I . . . TRIM68 55128 broad.mit.edu 36 11 4578502 4578502 + Silent SNP G A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018073 exon7 c.C1038T p.I346I . . . OR5M3 219482 broad.mit.edu 36 11 55994054 55994054 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001004742 exon1 c.T496G p.F166V . . . CLP1 10978 broad.mit.edu 36 11 57185002 57185002 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C C G C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001142597 exon3 c.C604G p.L202V . . . OR52N1 79473 broad.mit.edu 36 11 5766168 5766168 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001001913 exon1 c.T455G p.L152R . . . OR52E4 390081 broad.mit.edu 36 11 5862744 5862744 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001005165 exon1 c.G646A p.A216T . . . NRXN2 9379 broad.mit.edu 36 11 64175620 64175620 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C C G C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_015080 exon14 c.G2601C p.E867D . . . SPTBN2 6712 broad.mit.edu 36 11 66211595 66211595 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_006946 exon34 c.G6601A p.E2201K . . . SUV420H1 51111 broad.mit.edu 36 11 67682539 67682539 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_017635 exon11 c.G1850A p.G617E . . . PCF11 51585 broad.mit.edu 36 11 82560562 82560562 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_015885 exon9 c.C3715A p.P1239T . . . C12orf59 120939 broad.mit.edu 36 12 10233962 10233962 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C C G C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_153022 exon4 c.C448G p.P150A . . . DAO 1610 broad.mit.edu 36 12 107807425 107807425 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001917 exon4 c.G361T p.E121X . . . MYO1H 283446 broad.mit.edu 36 12 108355165 108355165 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 T T T T T T Unknown Wildtype None Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001101421 exon19 c.T1982C p.I661T . . . PRMT8 56341 broad.mit.edu 36 12 3571757 3571757 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_019854 exon9 c.T1079C p.M360T . . . COL2A1 1280 broad.mit.edu 36 12 46654872 46654872 + Silent SNP G A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_033150 exon51 c.C3720T p.D1240D . . . GJB2 2706 broad.mit.edu 36 13 19661364 19661364 + Silent SNP C T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004004 exon2 c.G357A p.E119E . . . DCLK1 9201 broad.mit.edu 36 13 35280434 35280434 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001195416 exon10 c.T869C p.L290P . . . SOHLH2 54937 broad.mit.edu 36 13 35674025 35674025 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_017826 exon2 c.A254C p.K85T . . . CSNK1A1L 122011 broad.mit.edu 36 13 36577386 36577386 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_145203 exon1 c.A8C p.N3T . . . FAM124A 220108 broad.mit.edu 36 13 50752661 50752661 + Silent SNP T A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_145019 exon5 c.T1017A p.T339T . . . EDNRB 1910 broad.mit.edu 36 13 77390521 77390521 + Silent SNP C T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001122659 exon1 c.G189A p.A63A . . . INF2 64423 broad.mit.edu 36 14 104240733 104240733 + Silent SNP C T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032714 exon4 c.C564T p.S188S . . . OR4K5 79317 broad.mit.edu 36 14 19459305 19459305 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G G C G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001005483 exon1 c.G700C p.A234P . . . AKAP6 9472 broad.mit.edu 36 14 32362333 32362333 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_004274 exon13 c.C5563T p.R1855C . . . SRSF5 6430 broad.mit.edu 36 14 69306980 69306980 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001039465 exon6 c.C410T p.A137V . . . PIGB 9488 broad.mit.edu 36 15 53398775 53398776 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 - - - - - - Unknown Wildtype None Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_004855 exon1 c.35_36insG p.P12fs . . . C15orf41 84529 broad.mit.edu 36 15 34737371 34737371 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001130010 exon5 c.T319G p.F107V . . . STRC 161497 broad.mit.edu 36 15 41679564 41679564 + Missense_Mutation SNP T C C rs2597060 by2Hit2Allele TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_153700 exon28 c.A5125G p.T1709A . . . RPL4 6124 broad.mit.edu 36 15 64580382 64580382 + Silent SNP G A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_000968 exon7 c.C792T p.Y264Y . . . TLE3 7090 broad.mit.edu 36 15 68145582 68145582 + Silent SNP G A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020908 exon7 c.C402T p.S134S . . . HCN4 10021 broad.mit.edu 36 15 71411668 71411668 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_005477 exon3 c.G1228A p.D410N . . . BAIAP3 8938 broad.mit.edu 36 16 1335285 1335285 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001199099 exon22 c.G1891A p.A631T . . . HYDIN 54768 broad.mit.edu 36 16 69509656 69509656 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C C G C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_032821 exon47 c.G7960C p.E2654Q . . . NGFR 4804 broad.mit.edu 36 17 44945284 44945284 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_002507 exon6 c.G1198A p.A400T . . . TP53 7157 broad.mit.edu 36 17 7520086 7520086 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001126114 exon4 c.T326G p.F109C . . . ROCK1 6093 broad.mit.edu 36 18 16787683 16787683 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005406 exon32 c.A3915C p.Q1305H . . . SMAD4 4089 broad.mit.edu 36 18 46857007 46857007 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_005359 exon11 c.T1310A p.V437D . . . PTPRM 5797 broad.mit.edu 36 18 8243317 8243317 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_002845 exon17 c.G2620A p.G874R . . . C19orf63 284361 broad.mit.edu 36 19 55676943 55676944 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_175063 exon7 c.692_693insG p.L231fs . . . OR10H2 26538 broad.mit.edu 36 19 15700673 15700673 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_013939 exon1 c.C820A p.L274M . . . CCDC123 84902 broad.mit.edu 36 19 38136546 38136546 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G G C G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_032816 exon4 c.C307G p.P103A . . . MYH14 79784 broad.mit.edu 36 19 55476865 55476865 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001077186 exon32 c.G4394A p.R1465Q . . . ZNF880 400713 broad.mit.edu 36 19 57579820 57579820 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001145434 exon4 c.A1175C p.K392T . . . NLRP2 55655 broad.mit.edu 36 19 60186225 60186225 + Silent SNP G A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001174083 exon7 c.G1278A p.T426T . . . TMEM150B 284417 broad.mit.edu 36 19 60516050 60516050 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001085488 exon8 c.G691T p.V231F . . . MTOR 2475 broad.mit.edu 36 1 11099665 11099665 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_004958 exon50 c.T6999G p.I2333M . . . NRAS 4893 broad.mit.edu 36 1 115058053 115058053 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002524 exon3 c.C181A p.Q61K NRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 . . HRNR 388697 broad.mit.edu 36 1 150457698 150457698 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001009931 exon3 c.C3031T p.R1011C . . . INSRR 3645 broad.mit.edu 36 1 155081194 155081194 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_014215 exon13 c.C2503T p.R835C . . . SPTA1 6708 broad.mit.edu 36 1 156884019 156884019 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_003126 exon27 c.G3830A p.R1277H . . . KLHL20 27252 broad.mit.edu 36 1 171992748 171992748 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G G C G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_014458 exon7 c.G978C p.W326C . . . ASTN1 460 broad.mit.edu 36 1 175193478 175193478 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_004319 exon11 c.C1846T p.R616C . . . CFH 3075 broad.mit.edu 36 1 194962545 194962545 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_000186 exon14 c.A2088C p.E696D . . . CR1 1378 broad.mit.edu 36 1 205785380 205785380 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000651 exon14 c.G2341A p.D781N . . . TGFB2 7042 broad.mit.edu 36 1 216674066 216674066 + Nonsense_Mutation SNP T G G novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_003238 exon3 c.T530G p.L177X . . . RYR2 6262 broad.mit.edu 36 1 236013844 236013844 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001035 exon90 c.C12209T p.A4070V . . . OR6F1 343169 broad.mit.edu 36 1 245942326 245942326 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001005286 exon1 c.G355T p.A119S . . . SPOCD1 90853 broad.mit.edu 36 1 32032419 32032419 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_144569 exon11 c.C2276T p.P759L . . . PHC2 1912 broad.mit.edu 36 1 33567322 33567322 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_198040 exon13 c.G2158A p.V720M . . . C8B 732 broad.mit.edu 36 1 57198323 57198323 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_000066 exon2 c.T207G p.S69R . . . SLC44A5 204962 broad.mit.edu 36 1 75449815 75449815 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_152697 exon23 c.T1973A p.F658Y . . . ZNF644 84146 broad.mit.edu 36 1 91179286 91179286 + Silent SNP C T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_201269 exon3 c.G213A p.T71T . . . CSRP2BP 57325 broad.mit.edu 36 20 18113356 18113356 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G G C G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_020536 exon9 c.G2095C p.A699P . . . TSHZ2 128553 broad.mit.edu 36 20 51305718 51305718 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_173485 exon2 c.A2314G p.S772G . . . COL18A1 80781 broad.mit.edu 36 21 45712784 45712784 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_030582 exon2 c.G847T p.E283X . . . SLC25A18 83733 broad.mit.edu 36 22 16452368 16452368 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_031481 exon10 c.G743T p.R248L . . . APOBEC3D 140564 broad.mit.edu 36 22 37755360 37755360 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_152426 exon5 c.A652G p.K218E . . . SPOPL 339745 broad.mit.edu 36 2 139024528 139024528 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001001664 exon3 c.A84C p.K28N . . . SCN9A 6335 broad.mit.edu 36 2 166763879 166763879 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_002977 exon27 c.T5483G p.L1828R . . . SDC1 6382 broad.mit.edu 36 2 20267112 20267112 + Silent SNP C T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002997 exon3 c.G570A p.R190R . . . CPO 130749 broad.mit.edu 36 2 207512597 207512597 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_173077 exon1 c.T29A p.L10H . . . OBSL1 23363 broad.mit.edu 36 2 220127584 220127584 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_015311 exon15 c.C4732T p.Q1578X . . . SLC30A3 7781 broad.mit.edu 36 2 27335158 27335158 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_003459 exon2 c.G244A p.V82I . . . WDR92 116143 broad.mit.edu 36 2 68212043 68212043 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_138458 exon8 c.G905A p.G302E . . . ZNF638 27332 broad.mit.edu 36 2 71430676 71430676 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_014497 exon2 c.G1084A p.V362I . . . MAPKAPK3 7867 broad.mit.edu 36 3 50630083 50630084 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004635 exon2 c.83_84insG p.P28fs . . . C3orf30 152405 broad.mit.edu 36 3 120348277 120348277 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_152539 exon1 c.G551A p.G184D . . . ZNF148 7707 broad.mit.edu 36 3 126480698 126480698 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_021964 exon6 c.A543T p.R181S . . . CCDC39 339829 broad.mit.edu 36 3 181844627 181844627 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_181426 exon12 c.T1640G p.L547R . . . KLHL24 54800 broad.mit.edu 36 3 184871614 184871614 + Silent SNP G A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_017644 exon6 c.G1323A p.K441K . . . MASP1 5648 broad.mit.edu 36 3 188453722 188453722 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001031849 exon6 c.A820T p.S274C . . . DLG1 1739 broad.mit.edu 36 3 198316197 198316197 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004087 exon15 c.C1619A p.T540K . . . XIRP1 165904 broad.mit.edu 36 3 39201548 39201548 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_194293 exon2 c.C4393T p.Q1465X . . . CHL1 10752 broad.mit.edu 36 3 399221 399221 + Silent SNP C A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006614 exon18 c.C2043A p.V681V . . . SRGAP3 9901 broad.mit.edu 36 3 9043649 9043649 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_014850 exon13 c.G1570A p.E524K . . . BRPF1 7862 broad.mit.edu 36 3 9757555 9757555 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_004634 exon4 c.G1652A p.R551Q . . . CRYBG3 131544 broad.mit.edu 36 3 99100730 99100730 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq . . . . . . . CRIPAK 285464 broad.mit.edu 36 4 1378923 1378923 + Silent SNP T C C novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_175918 exon1 c.T624C p.P208P . . . FGA 2243 broad.mit.edu 36 4 155725238 155725238 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_000508 exon6 c.G2089A p.G697S . . . GUCY1A3 2982 broad.mit.edu 36 4 156857809 156857809 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G G C G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001130682 exon8 c.G1621C p.E541Q . . . KCTD8 386617 broad.mit.edu 36 4 43871814 43871814 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_198353 exon2 c.G1172A p.R391H . . . PDGFRA 5156 broad.mit.edu 36 4 54828298 54828298 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_006206 exon6 c.T845A p.V282E . . . EPHA5 2044 broad.mit.edu 36 4 65915679 65915679 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_004439 exon10 c.A1915T p.N639Y . . . MCC 4163 broad.mit.edu 36 5 112486351 112486351 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001085377 exon6 c.G956A p.R319Q . . . DMXL1 1657 broad.mit.edu 36 5 118497625 118497625 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_005509 exon12 c.A2107G p.S703G . . . PCDHA2 56146 broad.mit.edu 36 5 140154917 140154917 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_018905 exon1 c.C184T p.R62C . . . PCDHAC2 56134 broad.mit.edu 36 5 140326972 140326972 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_018899 exon1 c.C437T p.P146L . . . PCDHB4 56131 broad.mit.edu 36 5 140483975 140483975 + Silent SNP C T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018938 exon1 c.C2211T p.D737D . . . PCDHB8 56128 broad.mit.edu 36 5 140538724 140538724 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G G G G G Unknown Wildtype None Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_019120 exon1 c.G925A p.D309N . . . PCDHB14 56122 broad.mit.edu 36 5 140584711 140584711 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_018934 exon1 c.G1450A p.A484T . . . PCDHGA2 56113 broad.mit.edu 36 5 140699012 140699012 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_032009 exon1 c.C290A p.A97D . . . FBXO38 81545 broad.mit.edu 36 5 147800217 147800217 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_205836 exon20 c.C3208G p.R1070G . . . NMUR2 56923 broad.mit.edu 36 5 151764634 151764634 + Silent SNP C T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020167 exon1 c.G234A p.T78T . . . ZNF354A 6940 broad.mit.edu 36 5 178072114 178072114 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005649 exon5 c.G1371C p.E457D . . . ZFP2 80108 broad.mit.edu 36 5 178291141 178291141 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_030613 exon5 c.A221G p.H74R . . . SLC45A2 51151 broad.mit.edu 36 5 33999585 33999585 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001012509 exon3 c.C856T p.Q286X . . . SPEF2 79925 broad.mit.edu 36 5 35705982 35705982 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_024867 exon10 c.G1420T p.E474X . . . LMBRD2 92255 broad.mit.edu 36 5 36150945 36150945 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001007527 exon12 c.A1471C p.N491H . . . LIFR 3977 broad.mit.edu 36 5 38541907 38541907 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001127671 exon9 c.A1148G p.K383R . . . EMB 133418 broad.mit.edu 36 5 49735005 49735005 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_198449 exon6 c.G641T p.G214V . . . ADCY2 108 broad.mit.edu 36 5 7855411 7855411 + Silent SNP C T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020546 exon21 c.C2709T p.S903S . . . VCAN 1462 broad.mit.edu 36 5 82851791 82851791 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G G C G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001164098 exon7 c.G1910C p.G637A . . . APC 324 broad.mit.edu 36 5 112203250 112203250 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001127511 exon14 c.4006delT p.F1336fs APC,large_intestine,NS,Substitution - Missense,-2 . . SYCP2L 221711 broad.mit.edu 36 6 11020895 11020895 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001040274 exon13 c.A922G p.R308G . . . PKIB 5570 broad.mit.edu 36 6 123080656 123080656 + Silent SNP A C C novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032471 exon3 c.A18C p.S6S . . . SYNE1 23345 broad.mit.edu 36 6 152681753 152681753 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_033071 exon84 c.A16114G p.T5372A . . . SYNE1 23345 broad.mit.edu 36 6 152873078 152873078 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_033071 exon8 c.A545T p.K182M . . . TNXB 7148 broad.mit.edu 36 6 32132472 32132472 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_019105 exon23 c.C8012T p.A2671V . . . PGK2 5232 broad.mit.edu 36 6 49862461 49862461 + Silent SNP T C C novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_138733 exon1 c.A399G p.Q133Q . . . BMP5 653 broad.mit.edu 36 6 55733231 55733231 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_021073 exon5 c.C1087T p.R363W . . . TXNDC5 81567 broad.mit.edu 36 6 7849928 7849928 + Silent SNP C A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_030810 exon2 c.G291T p.P97P . . . SYNCRIP 10492 broad.mit.edu 36 6 86406966 86406966 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 T T T T T T Unknown Wildtype None Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001159677 exon3 c.A184C p.I62L . . . OR2A12 346525 broad.mit.edu 36 7 143423433 143423433 + Silent SNP T G G novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001004135 exon1 c.T300G p.T100T . . . C7orf29 113763 broad.mit.edu 36 7 149658437 149658437 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_138434 exon1 c.G11A p.R4H . . . STK31 56164 broad.mit.edu 36 7 23775246 23775246 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G G C G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001122833 exon12 c.G1455C p.E485D . . . PKD1L1 168507 broad.mit.edu 36 7 47935619 47935619 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_138295 exon7 c.G767A p.R256H . . . ABCA13 154664 broad.mit.edu 36 7 48399286 48399286 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_152701 exon35 c.A11414C p.K3805T . . . MAGI2 9863 broad.mit.edu 36 7 78474420 78474420 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_012301 exon2 c.T340G p.L114V . . . EXT1 2131 broad.mit.edu 36 8 119191925 119191925 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000127 exon1 c.T542C p.L181P . . . GSDMC 56169 broad.mit.edu 36 8 130830109 130830109 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_031415 exon14 c.A1347T p.K449N . . . ADCY8 114 broad.mit.edu 36 8 131991167 131991167 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001115 exon6 c.G1609A p.A537T . . . GML 2765 broad.mit.edu 36 8 143925035 143925035 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_002066 exon4 c.G404T p.G135V . . . CSMD1 64478 broad.mit.edu 36 8 3026123 3026123 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_033225 exon37 c.C5642A p.A1881D . . . KIAA0146 23514 broad.mit.edu 36 8 48471691 48471691 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C C G C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001080394 exon6 c.C728G p.A243G . . . ZFHX4 79776 broad.mit.edu 36 8 77930982 77930982 + Silent SNP C T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_024721 exon10 c.C9270T p.H3090H . . . ZFHX4 79776 broad.mit.edu 36 8 77938901 77938901 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_024721 exon11 c.C10396T p.L3466F . . . DPP7 29952 broad.mit.edu 36 9 139126147 139126148 + Frame_Shift_Ins INS - C C novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_013379 exon10 c.1206_1207insG p.G402fs . . . TRPM3 80036 broad.mit.edu 36 9 72429968 72429968 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001007471 exon13 c.C1732T p.R578C . . . GNAQ 2776 broad.mit.edu 36 9 79602319 79602319 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002072 exon4 c.G542C p.R181T . . . HTR2C 3358 broad.mit.edu 36 X 113988963 113988963 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G A A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_000868 exon5 c.G491A p.R164H . . . IGSF1 3547 broad.mit.edu 36 X 130240354 130240355 + Missense_Mutation DNP AG GA GA novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 AG AG Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001170962 exon11 c.1775_1776TC . . . . GRPR 2925 broad.mit.edu 36 X 16078593 16078593 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005314 exon2 c.G658A p.V220I . . . BEND2 139105 broad.mit.edu 36 X 18099166 18099166 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_153346 exon13 c.C2061A p.S687R . . . ARSD 414 broad.mit.edu 36 X 2846233 2846233 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_009589 exon5 c.G475A p.G159R . . . CLCN5 1184 broad.mit.edu 36 X 49741762 49741762 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001127899 exon13 c.T1994G p.L665W . . . FAM123B 139285 broad.mit.edu 36 X 63328403 63328403 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_152424 exon2 c.C1489T p.R497X . . . AR 367 broad.mit.edu 36 X 66848107 66848107 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001011645 exon4 c.T428C p.L143P . . . TBL1Y 90665 broad.mit.edu 36 Y 6998319 6998319 + Silent SNP T A A novel unknown TCGA-AA-3666-01A-02W-0900-09 TCGA-AA-3666-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_033284 exon9 c.T540A p.S180S . . .