Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
PTPN20B	26095	broad.mit.edu	36	10	48391343	48391344	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001042393	exon6	c.534_535insA	p.N178fs	.	.	.
GPAM	57678	broad.mit.edu	36	10	113911439	113911439	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020918	exon15	c.C1470T	p.C490C	.	.	.
TCF7L2	6934	broad.mit.edu	36	10	114915324	114915324	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001146284	exon13	c.G1309A	p.A437T	.	.	.
AFAP1L2	84632	broad.mit.edu	36	10	116054625	116054625	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001001936	exon11	c.G1127C	p.R376T	.	.	.
RAB11FIP2	22841	broad.mit.edu	36	10	119790035	119790035	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014904	exon2	c.C385T	p.R129X	.	.	.
SFXN4	119559	broad.mit.edu	36	10	120910561	120910561	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_213649	exon4	c.G275C	p.S92T	.	.	.
FRMPD2	143162	broad.mit.edu	36	10	49120335	49120335	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001018071	exon5	c.C442T	p.R148W	.	.	.
ITIH2	3698	broad.mit.edu	36	10	7826840	7826840	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002216	exon19	c.G2489A	p.R830H	.	.	.
OR51A2	401667	broad.mit.edu	36	11	4932729	4932729	+	Missense_Mutation	SNP	C	T	T	rs61744535	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004748	exon1	c.G791A	p.R264H	.	.	.
OR4C13	283092	broad.mit.edu	36	11	49930802	49930802	+	Silent	SNP	C	G	G	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001955	exon1	c.C252G	p.L84L	.	.	.
OR8H2	390151	broad.mit.edu	36	11	55629196	55629196	+	Silent	SNP	G	C	C	rs61745328	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005200	exon1	c.G102C	p.L34L	.	.	.
ANO1	55107	broad.mit.edu	36	11	69611745	69611745	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018043	exon2	c.G348A	p.P116P	.	.	.
JRKL	8690	broad.mit.edu	36	11	95764264	95764264	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003772	exon1	c.A803C	p.K268T	.	.	.
PLEKHA5	54477	broad.mit.edu	36	12	19402569	19402569	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_019012	exon21	c.C2781T	p.I927I	.	.	.
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35A	p.G12D	 KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.
AQP2	359	broad.mit.edu	36	12	48634734	48634734	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000486	exon3	c.G580A	p.V194I	.	.	.
MYO16	23026	broad.mit.edu	36	13	108577876	108577876	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001198950	exon31	c.C4028T	p.A1343V	.	.	.
AHNAK2	113146	broad.mit.edu	36	14	104488825	104488825	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138420	exon7	c.G4008A	p.P1336P	.	.	.
FAM181A	90050	broad.mit.edu	36	14	93464524	93464524	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138344	exon3	c.G326A	p.R109H	.	.	.
ATG2B	55102	broad.mit.edu	36	14	95826914	95826914	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018036	exon39	c.A5691G	p.L1897L	.	.	.
GPX2	2877	broad.mit.edu	36	14	64476076	64476076	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002083	exon2	c.456delG	p.W152X	.	.	.
POTEB	339010	broad.mit.edu	36	15	19305394	19305394	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_207355	exon11	c.G1624T	p.E542X	.	.	.
COMMD4	54939	broad.mit.edu	36	15	73419260	73419260	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017828	exon7	c.G547A	p.V183I	.	.	.
C16orf88	400506	broad.mit.edu	36	16	19630224	19630225	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001012991	exon3	c.958_959insA	p.G320fs	.	.	.
SYT17	51760	broad.mit.edu	36	16	19102630	19102630	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016524	exon5	c.G611A	p.R204H	.	.	.
SLFN11	91607	broad.mit.edu	36	17	30713908	30713908	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001104589	exon3	c.C1032T	p.T344T	.	.	.
LRRC37A3	374819	broad.mit.edu	36	17	60286098	60286098	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_199340	exon11	c.C4628T	p.T1543M	.	.	.
TP53	7157	broad.mit.edu	36	17	7520037	7520037	+	Silent	SNP	C	T	T	rs68140816	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon4	c.G375A	p.T125T	TP53,lung,NS,Unknown,+1	.	.
DDX49	54555	broad.mit.edu	36	19	18899598	18899598	+	Missense_Mutation	SNP	G	A	A	rs73923185	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_019070	exon11	c.G1126A	p.V376M	.	.	.
CLASRP	11129	broad.mit.edu	36	19	50257293	50257293	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_007056	exon11	c.G905A	p.R302Q	.	.	.
ZNF578	147660	broad.mit.edu	36	19	57706954	57706954	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001099694	exon6	c.G1508T	p.R503I	.	.	.
ZNF28	7576	broad.mit.edu	36	19	57995486	57995486	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006969	exon4	c.T1424G	p.V475G	.	.	.
IVL	3713	broad.mit.edu	36	1	151149690	151149690	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005547	exon2	c.C793A	p.H265N	.	.	.
CD5L	922	broad.mit.edu	36	1	156078104	156078104	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005894	exon1	c.A12T	p.L4L	.	.	.
FAM5C	339479	broad.mit.edu	36	1	188517394	188517394	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_199051	exon3	c.C346T	p.R116C	 FAM5C,kidney,NS,Substitution - Missense,0 	.	.
CCDC27	148870	broad.mit.edu	36	1	3667750	3667750	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152492	exon5	c.G757A	p.E253K	.	.	.
PER3	8863	broad.mit.edu	36	1	7809277	7809277	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016831	exon16	c.G2084A	p.R695Q	.	.	.
SDCBP2	27111	broad.mit.edu	36	20	1241352	1241352	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_080489	exon6	c.C439T	p.R147C	.	.	.
PAX1	5075	broad.mit.edu	36	20	21637940	21637940	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006192	exon4	c.C1140T	p.S380S	.	.	.
TRIOBP	11078	broad.mit.edu	36	22	36449218	36449218	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001039141	exon7	c.C709T	p.R237W	.	.	.
TNRC6B	23112	broad.mit.edu	36	22	39027106	39027106	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015088	exon13	c.C3613T	p.R1205X	.	.	.
ZBED4	9889	broad.mit.edu	36	22	48665028	48665028	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014838	exon2	c.G1714A	p.A572T	.	.	.
GPD2	2820	broad.mit.edu	36	2	157115365	157115365	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001083112	exon8	c.G832A	p.E278K	.	.	.
SLC8A1	6546	broad.mit.edu	36	2	40509633	40509633	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001112800	exon1	c.G1292A	p.R431H	.	.	.
PRKCE	5581	broad.mit.edu	36	2	46065303	46065303	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005400	exon6	c.G803A	p.R268Q	.	.	.
USP34	9736	broad.mit.edu	36	2	61375895	61375895	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014709	exon31	c.A4289G	p.K1430R	.	.	.
TET3	200424	broad.mit.edu	36	2	74181948	74181948	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_144993	exon9	c.C4120T	p.R1374X	.	.	.
NAA50	80218	broad.mit.edu	36	3	114925567	114925567	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025146	exon2	c.T74C	p.V25A	.	.	.
CNTN6	27255	broad.mit.edu	36	3	1346543	1346543	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014461	exon11	c.G1288A	p.G430R	.	.	.
PIK3CA	5290	broad.mit.edu	36	3	180410674	180410674	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006218	exon8	c.T1258C	p.C420R	 PIK3CA,central_nervous_system,brain,Substitution - Missense,0 	.	.
QRICH1	54870	broad.mit.edu	36	3	49089352	49089352	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198880	exon2	c.G103T	p.A35S	.	.	.
GMPPB	29925	broad.mit.edu	36	3	49734695	49734695	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013334	exon7	c.C741T	p.G247G	.	.	.
PCDH18	54510	broad.mit.edu	36	4	138672146	138672147	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_019035	exon1	c.547_548insT	p.N183_I184delinsX	.	.	.
SPATA5	166378	broad.mit.edu	36	4	124069695	124069695	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145207	exon3	c.G339A	p.L113L	.	.	.
GUCY1A3	2982	broad.mit.edu	36	4	156851536	156851536	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001130682	exon6	c.G769A	p.V257I	.	.	.
TLL1	7092	broad.mit.edu	36	4	167135079	167135079	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012464	exon4	c.C458T	p.T153M	.	.	.
ADAM29	11086	broad.mit.edu	36	4	176135316	176135316	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001130705	exon3	c.A2065G	p.I689V	.	.	.
GABRG1	2565	broad.mit.edu	36	4	45755267	45755267	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_173536	exon6	c.C755T	p.T252M	.	.	.
EPB41L4A	64097	broad.mit.edu	36	5	111670983	111670983	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_022140	exon2	c.C203T	p.T68M	.	.	.
APC	324	broad.mit.edu	36	5	112202167	112202167	+	Nonsense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.A2923T	p.K975X	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13767520	13767520	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001369	exon75	c.C13119A	p.P4373P	.	.	.
CXXC5	51523	broad.mit.edu	36	5	139040515	139040515	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016463	exon2	c.C223T	p.R75C	.	.	.
PCDHB8	56128	broad.mit.edu	36	5	140539707	140539707	+	Silent	SNP	G	A	A	rs17844502	byCluster	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_019120	exon1	c.G1908A	p.A636A	.	.	.
LARS	51520	broad.mit.edu	36	5	145488769	145488769	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020117	exon26	c.C2734T	p.R912X	.	.	.
GABRG2	2566	broad.mit.edu	36	5	161508810	161508810	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198904	exon8	c.C1041T	p.F347F	.	.	.
REV3L	5980	broad.mit.edu	36	6	111785012	111785012	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002912	exon18	c.A7082G	p.Y2361C	.	.	.
F13A1	2162	broad.mit.edu	36	6	6167376	6167376	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000129	exon8	c.G1001T	p.R334I	.	.	.
UBN2	254048	broad.mit.edu	36	7	138607632	138607633	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	-	-	-	A	-	A	Unknown	Valid	Germline	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_173569	exon9	c.1621_1622insA	p.Q541fs	.	.	.
GPER	2852	broad.mit.edu	36	7	1098632	1098632	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001505	exon2	c.C742T	p.R248C	.	.	.
SGCE	8910	broad.mit.edu	36	7	94097051	94097051	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003919	exon2	c.G148A	p.V50I	.	.	.
RP1L1	94137	broad.mit.edu	36	8	10505720	10505720	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_178857	exon4	c.G3298A	p.V1100M	.	.	.
TRPS1	7227	broad.mit.edu	36	8	116668776	116668776	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014112	exon5	c.G2327C	p.S776T	.	.	.
ST3GAL1	6482	broad.mit.edu	36	8	134547392	134547392	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_173344	exon6	c.G430A	p.V144I	.	.	.
MYOM2	9172	broad.mit.edu	36	8	2041697	2041697	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003970	exon23	c.G2901C	p.L967L	.	.	.
PXDNL	137902	broad.mit.edu	36	8	52484147	52484147	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_144651	exon17	c.C2590T	p.R864C	.	.	.
BAT2L1	84726	broad.mit.edu	36	9	133311813	133311813	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_013318	exon6	c.A818G	p.Y273C	.	.	.
CNTFR	1271	broad.mit.edu	36	9	34554744	34554744	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_147164	exon4	c.C172T	p.R58W	.	.	.
DOCK8	81704	broad.mit.edu	36	9	386805	386805	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001190458	exon23	c.C2691T	p.H897H	.	.	.
ZNF322B	387328	broad.mit.edu	36	9	99001604	99001604	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_199005	exon1	c.C11A	p.S4X	.	.	.
NXF5	55998	broad.mit.edu	36	X	100982721	100982721	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032946	exon8	c.C403G	p.R135G	.	.	.
GPR50	9248	broad.mit.edu	36	X	150096030	150096030	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004224	exon1	c.G179A	p.R60Q	.	.	.
SMC1A	8243	broad.mit.edu	36	X	53448733	53448733	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006306	exon13	c.G2132T	p.R711L	.	.	.
FGD1	2245	broad.mit.edu	36	X	54492908	54492908	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004463	exon14	c.C2057A	p.S686Y	.	.	.
KLF8	11279	broad.mit.edu	36	X	56313376	56313376	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007250	exon5	c.G795A	p.S265S	.	.	.
MAGEE1	57692	broad.mit.edu	36	X	75567372	75567372	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020932	exon1	c.G2645A	p.R882H	.	.	.
PCDH11X	27328	broad.mit.edu	36	X	91019712	91019712	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032968	exon2	c.C1817T	p.T606M	.	.	.