Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target CREM 1390 broad.mit.edu 36 10 35525027 35525027 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_182721 exon1 c.C31T p.L11F . . . LRRC18 474354 broad.mit.edu 36 10 49791555 49791555 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 G G G A G A Unknown Valid Germline Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001006939 exon1 c.C652T p.R218W . . . ATM 472 broad.mit.edu 36 11 107626897 107626897 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 C C C G C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_000051 exon10 c.C1495G p.Q499E . . . ZC3H12C 85463 broad.mit.edu 36 11 109512815 109512815 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_033390 exon2 c.C239T p.A80V . . . MRGPRX1 259249 broad.mit.edu 36 11 18912066 18912066 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_147199 exon1 c.G842A p.R281H . . . OR4D9 390199 broad.mit.edu 36 11 59038981 59038981 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001004711 exon1 c.C20A p.T7N . . . STIP1 10963 broad.mit.edu 36 11 63727573 63727573 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006819 exon13 c.C1462T p.R488X . . . SYTL2 54843 broad.mit.edu 36 11 85122865 85122865 + Silent SNP A T T novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032943 exon7 c.T1152A p.S384S . . . AMOTL1 154810 broad.mit.edu 36 11 94232420 94232420 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_130847 exon9 c.G2027A p.R676Q . . . WSCD2 9671 broad.mit.edu 36 12 107113780 107113780 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_014653 exon2 c.G41A p.R14Q . . . FBXW8 26259 broad.mit.edu 36 12 115950233 115950233 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_153348 exon11 c.G1670A p.R557H . . . TMEM132B 114795 broad.mit.edu 36 12 124701189 124701189 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_052907 exon7 c.C1636T p.R546W . . . ARHGDIB 397 broad.mit.edu 36 12 14986899 14986899 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001175 exon6 c.G430T p.G144C . . . ANO6 196527 broad.mit.edu 36 12 43982111 43982111 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001025356 exon2 c.G118A p.E40K . . . PRKAG1 5571 broad.mit.edu 36 12 47683049 47683049 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002733 exon12 c.G896A p.R299Q . . . RASA3 22821 broad.mit.edu 36 13 113811442 113811442 + Silent SNP C T T novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_007368 exon6 c.G513A p.T171T . . . LHFP 10186 broad.mit.edu 36 13 38816122 38816122 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005780 exon4 c.C554T p.T185M . . . PCDH9 5101 broad.mit.edu 36 13 66699598 66699598 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_020403 exon2 c.C976T p.H326Y . . . C14orf135 64430 broad.mit.edu 36 14 59651895 59651895 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_022495 exon3 c.G618T p.M206I . . . ESR2 2100 broad.mit.edu 36 14 63797100 63797100 + Silent SNP G A A novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001437 exon5 c.C772T p.L258L . . . GABRA5 2558 broad.mit.edu 36 15 24665530 24665530 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001165037 exon3 c.C42A p.N14K . . . UNC13C 440279 broad.mit.edu 36 15 52095285 52095285 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001080534 exon1 c.C2893G p.P965A . . . ANKDD1A 348094 broad.mit.edu 36 15 63013443 63013443 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_182703 exon9 c.C823T p.R275W . . . STX4 6810 broad.mit.edu 36 16 30958470 30958470 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004604 exon9 c.G810T p.R270S . . . CDH11 1009 broad.mit.edu 36 16 63562986 63562986 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 G G G C G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001797 exon11 c.C1639G p.R547G . . . CHST4 10164 broad.mit.edu 36 16 70129085 70129085 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001166395 exon2 c.G1004A p.R335H . . . JPH3 57338 broad.mit.edu 36 16 86235533 86235533 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020655 exon2 c.C551T p.A184V . . . KSR1 8844 broad.mit.edu 36 17 22934151 22934151 + Silent SNP A C C novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014238 exon5 c.A462C p.P154P . . . GAS2L2 246176 broad.mit.edu 36 17 31098295 31098295 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 C C T T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_139285 exon5 c.G938A p.R313H . . . KRT38 8687 broad.mit.edu 36 17 36848987 36848987 + Silent SNP G A A novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006771 exon3 c.C726T p.H242H . . . SPATA20 64847 broad.mit.edu 36 17 45981534 45981534 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_022827 exon6 c.A648T p.R216S . . . TP53 7157 broad.mit.edu 36 17 7518264 7518264 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001126114 exon7 c.C742T p.R248W TP53,haematopoietic_and_lymphoid_tissue,lymph_node,Substitution - Missense,+1 . . TCEB3B 51224 broad.mit.edu 36 18 42814288 42814288 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_016427 exon1 c.C1346A p.A449D . . . SUGP2 10147 broad.mit.edu 36 19 18991027 18991027 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014884 exon4 c.C1741T p.R581X . . . FBXO27 126433 broad.mit.edu 36 19 44209470 44209470 + Silent SNP G A A novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_178820 exon5 c.C588T p.H196H . . . CEACAM21 90273 broad.mit.edu 36 19 46775588 46775588 + De_novo_Start_OutOfFrame SNP C T T novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_033543 exon2 c.C261T p.H87H . . . PSG4 5672 broad.mit.edu 36 19 48390459 48390459 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002780 exon5 c.T1116G p.F372L . . . BAX 581 broad.mit.edu 36 19 54155926 54155926 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_138763 exon4 c.G270T p.W90C . . . PPFIA3 8541 broad.mit.edu 36 19 54334865 54334865 + Silent SNP G A A novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003660 exon17 c.G2205A p.A735A . . . EXOSC10 5394 broad.mit.edu 36 1 11065385 11065385 + Silent SNP G C C novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001001998 exon10 c.C1227G p.L409L . . . EXOSC10 5394 broad.mit.edu 36 1 11070518 11070518 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001001998 exon8 c.A871G p.I291V . . . RHBG 57127 broad.mit.edu 36 1 154614732 154614732 + Silent SNP G T T novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020407 exon4 c.G591T p.S197S . . . PYHIN1 149628 broad.mit.edu 36 1 157178702 157178702 + Silent SNP G A A novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_198930 exon5 c.G864A p.T288T . . . TPR 7175 broad.mit.edu 36 1 184563217 184563217 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_003292 exon40 c.G5887A p.E1963K . . . MAST2 23139 broad.mit.edu 36 1 46269737 46269737 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015112 exon24 c.G3080A p.R1027H . . . PKN2 5586 broad.mit.edu 36 1 89045836 89045836 + Silent SNP C T T novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006256 exon14 c.C1971T p.F657F . . . TTLL9 164395 broad.mit.edu 36 20 29977519 29977519 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001008409 exon10 c.G712T p.A238S . . . STX16 8675 broad.mit.edu 36 20 56677754 56677754 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003763 exon4 c.T332G p.L111R . . . GNAS 2778 broad.mit.edu 36 20 56863494 56863494 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 G G G C G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001077490 exon1 c.G1592C p.S531T . . . TRAPPC10 7109 broad.mit.edu 36 21 44303456 44303456 + De_novo_Start_OutOfFrame SNP C T T novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_003274 exon6 c.C723T p.D241D . . . PI4KA 5297 broad.mit.edu 36 22 19486277 19486277 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_058004 exon14 c.A1534G p.I512V . . . MALL 7851 broad.mit.edu 36 2 110202516 110202516 + Silent SNP G A A novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005434 exon3 c.C321T p.A107A . . . LRP1B 53353 broad.mit.edu 36 2 141360307 141360307 + Silent SNP T C C novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018557 exon24 c.A3834G p.R1278R . . . KYNU 8942 broad.mit.edu 36 2 143516118 143516118 + Silent SNP G T T novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003937 exon14 c.G1305T p.V435V . . . WIPF1 7456 broad.mit.edu 36 2 175148292 175148292 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001077269 exon4 c.G244A p.G82R . . . EHD3 30845 broad.mit.edu 36 2 31311113 31311113 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014600 exon1 c.G122T p.R41L . . . UGP2 7360 broad.mit.edu 36 2 63963149 63963149 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001001521 exon4 c.A268C p.I90L . . . REG3A 5068 broad.mit.edu 36 2 79239332 79239332 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_002580 exon3 c.C148A p.H50N . . . NIT2 56954 broad.mit.edu 36 3 101556735 101556735 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020202 exon10 c.G764A p.R255H . . . CBLB 868 broad.mit.edu 36 3 106871797 106871797 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_170662 exon18 c.C2659T p.Q887X . . . C3orf59 151963 broad.mit.edu 36 3 193999568 193999568 + Silent SNP A G G novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_178496 exon2 c.T777C p.D259D . . . PCYT1A 5130 broad.mit.edu 36 3 197481746 197481746 + Silent SNP C T T novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005017 exon3 c.G54A p.A18A . . . ADAMTS9 56999 broad.mit.edu 36 3 64581945 64581945 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_182920 exon19 c.C2698T p.R900X . . . ARHGAP31 57514 broad.mit.edu 36 3 120617059 120617059 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020754 exon12 c.3593delG p.R1198fs . . . TUBB4Q 56604 broad.mit.edu 36 4 191141556 191141556 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020040 exon4 c.G419C p.W140S . . . APC 324 broad.mit.edu 36 5 112156042 112156042 + Nonsense_Mutation SNP C T T rs62619935 unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001127510 exon8 c.C646T p.R216X . . . APC 324 broad.mit.edu 36 5 112203111 112203115 + Frame_Shift_Del DEL AAAAG - - novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 AAAAG AAAAG Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001127511 exon14 c.3867_3871del p.1289_1291del APC,large_intestine,colon,Substitution - Nonsense,-1 . . IGF2R 3482 broad.mit.edu 36 6 160374068 160374068 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_000876 exon9 c.G1150A p.V384M . . . HIST1H2BM 8342 broad.mit.edu 36 6 27891004 27891004 + Silent SNP C T T novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003521 exon1 c.C204T p.N68N . . . RDBP 7936 broad.mit.edu 36 6 32030395 32030396 + Silent DNP GA TG TG novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 GA GA Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002904 exon7 c.657_658CA . . . . KCNK17 89822 broad.mit.edu 36 6 39380385 39380385 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_031460 exon3 c.C377T p.T126M . . . BAI3 577 broad.mit.edu 36 6 70001735 70001735 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001704 exon19 c.G2698T p.A900S . . . DDC 1644 broad.mit.edu 36 7 50575216 50575216 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000790 exon3 c.C206T p.T69M . . . SEMA3D 223117 broad.mit.edu 36 7 84535472 84535472 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_152754 exon5 c.C560T p.P187L . . . MTSS1 9788 broad.mit.edu 36 8 125634538 125634538 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014751 exon14 c.G2144A p.S715N . . . PRKDC 5591 broad.mit.edu 36 8 48869478 48869478 + Silent SNP G C C novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001081640 exon74 c.C10595G p.P3532R . . . MFHAS1 9258 broad.mit.edu 36 8 8785223 8785223 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_004225 exon1 c.A2756G p.Y919C . . . EXOSC2 23404 broad.mit.edu 36 9 132560700 132560700 + Silent SNP G T T novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014285 exon2 c.G123T p.R41R . . . KIAA1045 23349 broad.mit.edu 36 9 34966636 34966636 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_015297 exon5 c.C748T p.R250C . . . DOCK8 81704 broad.mit.edu 36 9 410430 410430 + Silent SNP G A A novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001190458 exon29 c.G3570A p.A1190A . . . IARS 3376 broad.mit.edu 36 9 94067201 94067201 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_013417 exon16 c.C1531T p.R511C . . . POU3F4 5456 broad.mit.edu 36 X 82650048 82650048 + Silent SNP G A A novel unknown TCGA-AA-3679-01A-02W-0900-09 TCGA-AA-3679-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000307 exon1 c.G60A p.A20A . . .