Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
SLC18A3	6572	broad.mit.edu	36	10	50490327	50490327	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003055	exon1	c.G1535A	p.R512H	.	.	.
FAM190B	54462	broad.mit.edu	36	10	86249630	86249630	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018999	exon10	c.C2345T	p.S782F	.	.	.
AASDHPPT	60496	broad.mit.edu	36	11	105466496	105466496	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015423	exon3	c.C412T	p.R138C	.	.	.
TBCEL	219899	broad.mit.edu	36	11	120462727	120462727	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152715	exon8	c.G987T	p.K329N	.	.	.
OR52J3	119679	broad.mit.edu	36	11	5024701	5024701	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001001916	exon1	c.C370A	p.R124S	.	.	.
OR52E8	390079	broad.mit.edu	36	11	5835173	5835173	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005168	exon1	c.C336A	p.F112L	.	.	.
RNF169	254225	broad.mit.edu	36	11	74224534	74224534	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001098638	exon6	c.A1238G	p.N413S	.	.	.
VSIG10	54621	broad.mit.edu	36	12	117017899	117017899	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_019086	exon2	c.G183A	p.S61S	.	.	.
KRAS	3845	broad.mit.edu	36	12	25289548	25289548	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004985	exon2	c.G38A	p.G13D	 KRAS,lung,NS,Substitution - Missense,-1 	.	.
OVCH1	341350	broad.mit.edu	36	12	29530531	29530531	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_183378	exon8	c.C910A	p.P304T	.	.	.
YARS2	51067	broad.mit.edu	36	12	32798160	32798160	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001040436	exon2	c.G906T	p.L302F	.	.	.
LRRK2	120892	broad.mit.edu	36	12	39031674	39031674	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198578	exon44	c.G6448A	p.V2150I	.	.	.
C12orf67	144360	broad.mit.edu	36	12	24628159	24628159	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
MTMR6	9107	broad.mit.edu	36	13	24733906	24733906	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004685	exon6	c.G626T	p.G209V	.	.	.
GPR12	2835	broad.mit.edu	36	13	26230980	26230980	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005288	exon2	c.C985T	p.R329C	.	.	.
KIAA1409	57578	broad.mit.edu	36	14	93154441	93154441	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020818	exon29	c.G3844A	p.E1282K	.	.	.
IGDCC3	9543	broad.mit.edu	36	15	63410827	63410827	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004884	exon8	c.G1372A	p.V458I	.	.	.
PML	5371	broad.mit.edu	36	15	72104297	72104297	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033238	exon4	c.C1230T	p.P410P	.	.	.
CSPG4	1464	broad.mit.edu	36	15	73769255	73769255	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001897	exon3	c.C1206T	p.A402A	.	.	.
ZNF213	7760	broad.mit.edu	36	16	3128475	3128475	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001134655	exon3	c.C455T	p.T152M	.	.	.
RPGRIP1L	23322	broad.mit.edu	36	16	52287589	52287589	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127897	exon3	c.C205T	p.R69C	.	.	.
IRX6	79190	broad.mit.edu	36	16	53920702	53920702	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024335	exon5	c.C1311A	p.C437X	.	.	.
PRPF8	10594	broad.mit.edu	36	17	1511412	1511412	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006445	exon27	c.G4241A	p.R1414H	.	.	.
MYO18A	399687	broad.mit.edu	36	17	24446133	24446133	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_203318	exon29	c.C4456T	p.R1486W	.	.	.
KPNB1	3837	broad.mit.edu	36	17	43107051	43107051	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002265	exon15	c.G1816A	p.V606M	.	.	.
ALOX15	246	broad.mit.edu	36	17	4481698	4481698	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001140	exon14	c.C1935T	p.D645D	.	.	.
MKS1	54903	broad.mit.edu	36	17	53646735	53646735	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017777	exon6	c.C528T	p.I176I	.	.	.
PRPF8	10594	broad.mit.edu	36	17	1532223	1532223	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006445	exon4	c.384delC	p.F128fs	.	.	.
TUBB6	84617	broad.mit.edu	36	18	12315518	12315518	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032525	exon4	c.G730T	p.G244C	.	.	.
KIAA1632	57724	broad.mit.edu	36	18	41714113	41714113	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020964	exon32	c.C5592G	p.S1864R	.	.	.
KATNAL2	83473	broad.mit.edu	36	18	42880629	42880629	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031303	exon14	c.G1165T	p.E389X	.	.	.
SERPINB11	89778	broad.mit.edu	36	18	59539141	59539141	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_080475	exon7	c.G715A	p.V239I	.	.	.
KIAA0802	23255	broad.mit.edu	36	18	8710394	8710394	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015210	exon4	c.G257A	p.R86H	.	.	.
TNPO2	30000	broad.mit.edu	36	19	12683221	12683221	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001136196	exon11	c.C1006T	p.R336C	.	.	.
TMEM147	10430	broad.mit.edu	36	19	40729877	40729877	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032635	exon6	c.C446T	p.A149V	.	.	.
NFKBID	84807	broad.mit.edu	36	19	41072752	41072752	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_139239	exon11	c.T768C	p.P256P	.	.	.
ZNF569	148266	broad.mit.edu	36	19	42595498	42595498	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152484	exon6	c.C1902T	p.F634F	.	.	.
PSG7	5676	broad.mit.edu	36	19	48122556	48122556	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002783	exon4	c.C862T	p.R288X	.	.	.
ZNF284	342909	broad.mit.edu	36	19	49283068	49283068	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001037813	exon5	c.C1597T	p.H533Y	.	.	.
LRRC4B	94030	broad.mit.edu	36	19	55713684	55713684	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001080457	exon3	c.C1098T	p.I366I	.	.	.
ZNF256	10172	broad.mit.edu	36	19	63145132	63145132	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005773	exon3	c.C856T	p.R286X	.	.	.
ADAM15	8751	broad.mit.edu	36	1	153301368	153301369	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_207197	exon22	c.2448_2449insC	p.P816fs	.	.	.
DENND2C	163259	broad.mit.edu	36	1	114945043	114945043	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198459	exon11	c.G1706A	p.R569Q	.	.	.
ADAR	103	broad.mit.edu	36	1	152829480	152829480	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015841	exon7	c.G2243T	p.R748L	.	.	.
ZBTB7B	51043	broad.mit.edu	36	1	153253932	153253932	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015872	exon3	c.T172C	p.Y58H	.	.	.
CACNA1S	779	broad.mit.edu	36	1	199306108	199306108	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000069	exon17	c.C2275T	p.R759C	.	.	.
CR2	1380	broad.mit.edu	36	1	205709889	205709889	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001006658	exon6	c.G1044A	p.A348A	.	.	.
SNAP47	116841	broad.mit.edu	36	1	226013482	226013482	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_053052	exon3	c.A796G	p.T266A	.	.	.
WNT3A	89780	broad.mit.edu	36	1	226277002	226277002	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033131	exon2	c.T83C	p.V28A	.	.	.
PGBD5	79605	broad.mit.edu	36	1	228553379	228553379	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024554	exon3	c.G635A	p.R212Q	.	.	.
OR2G6	391211	broad.mit.edu	36	1	246751967	246751967	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001013355	exon1	c.A397G	p.I133V	.	.	.
WDR78	79819	broad.mit.edu	36	1	67109737	67109737	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_207014	exon6	c.G844A	p.G282S	.	.	.
PER3	8863	broad.mit.edu	36	1	7809995	7809995	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016831	exon17	c.G2395A	p.V799I	.	.	.
TM9SF4	9777	broad.mit.edu	36	20	30202289	30202289	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014742	exon12	c.C1195T	p.R399C	.	.	.
ASXL1	171023	broad.mit.edu	36	20	30487069	30487069	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015338	exon12	c.C2893T	p.R965X	.	.	.
CTNNBL1	56259	broad.mit.edu	36	20	35794720	35794720	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_030877	exon2	c.G56A	p.R19Q	.	.	.
TSHZ2	128553	broad.mit.edu	36	20	51303738	51303738	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_173485	exon2	c.G334A	p.V112I	.	.	.
KRTAP27-1	643812	broad.mit.edu	36	21	30631511	30631511	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001077711	exon1	c.G347T	p.C116F	.	.	.
RIMBP3C	150221	broad.mit.edu	36	22	20230499	20230500	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001128633	exon1	c.4767_4768insG	p.G1589fs	.	.	.
RANBP2	5903	broad.mit.edu	36	2	108734502	108734502	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006267	exon11	c.C1542A	p.C514X	.	.	.
CCDC74A	90557	broad.mit.edu	36	2	132004737	132004737	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138770	exon3	c.G411A	p.E137E	.	.	.
OSBPL6	114880	broad.mit.edu	36	2	178956030	178956030	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032523	exon17	c.G1655A	p.R552Q	.	.	.
DNPEP	23549	broad.mit.edu	36	2	219958965	219958965	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012100	exon6	c.G559A	p.E187K	.	.	.
C2orf85	285093	broad.mit.edu	36	2	242462959	242462959	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173821	exon2	c.C579T	p.D193D	.	.	.
DNAJC27	51277	broad.mit.edu	36	2	25027882	25027882	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016544	exon6	c.C574T	p.R192C	.	.	.
NRBP1	29959	broad.mit.edu	36	2	27509733	27509733	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_013392	exon2	c.T89C	p.V30A	.	.	.
DYSF	8291	broad.mit.edu	36	2	71633724	71633724	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001130982	exon21	c.G1924A	p.A642T	.	.	.
KIAA1310	55683	broad.mit.edu	36	2	96640295	96640295	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001115016	exon11	c.G1214T	p.G405V	.	.	.
EPHB1	2047	broad.mit.edu	36	3	136450894	136450894	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004441	exon15	c.C2717G	p.S906C	.	.	.
ATP13A4	84239	broad.mit.edu	36	3	194612830	194612830	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032279	exon27	c.C3039A	p.S1013R	.	.	.
DCLK3	85443	broad.mit.edu	36	3	36734638	36734638	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033403	exon4	c.C1620T	p.G540G	.	.	.
SLC6A20	54716	broad.mit.edu	36	3	45776404	45776404	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022405	exon9	c.C1467T	p.S489S	.	.	.
SETD2	29072	broad.mit.edu	36	3	47073415	47073415	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014159	exon15	c.C6863T	p.P2288L	.	.	.
SEMA3F	6405	broad.mit.edu	36	3	50200207	50200207	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004186	exon19	c.C2013T	p.S671S	.	.	.
GRM7	2917	broad.mit.edu	36	3	7595139	7595139	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000844	exon8	c.C1546T	p.R516X	.	.	.
PALLD	23022	broad.mit.edu	36	4	169669684	169669684	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016081	exon2	c.G454A	p.V152I	.	.	.
CCDC110	256309	broad.mit.edu	36	4	186616487	186616487	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152775	exon6	c.G2248A	p.V750I	.	.	.
WHSC1	7468	broad.mit.edu	36	4	1910041	1910041	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_133331	exon9	c.G1740A	p.S580S	.	.	.
SMR3B	10879	broad.mit.edu	36	4	71290106	71290106	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006685	exon3	c.C192A	p.P64P	.	.	.
CCDC69	26112	broad.mit.edu	36	5	150544495	150544496	+	De_novo_Start_InFrame	INS	-	C	C	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	.	.	.	.	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13745194	13745194	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001369	exon79	c.C13774T	p.R4592X	.	.	.
CD14	929	broad.mit.edu	36	5	139991689	139991689	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001040021	exon3	c.C1064T	p.S355L	.	.	.
PCDHB6	56130	broad.mit.edu	36	5	140511433	140511433	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018939	exon1	c.G1411A	p.V471I	.	.	.
PCDHB14	56122	broad.mit.edu	36	5	140585161	140585161	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018934	exon1	c.G1900A	p.D634N	.	.	.
HEATR7B2	133558	broad.mit.edu	36	5	41101227	41101227	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173489	exon4	c.C324T	p.F108F	.	.	.
MCTP1	79772	broad.mit.edu	36	5	94274315	94274315	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001002796	exon9	c.C810T	p.S270S	.	.	.
APC	324	broad.mit.edu	36	5	112202678	112202678	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.3434delG	p.S1145fs	.	.	.
APC	324	broad.mit.edu	36	5	112203908	112203908	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.4664delA	p.E1555fs	.	.	.
LAMA2	3908	broad.mit.edu	36	6	129819302	129819303	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000426	exon48	c.6837_6838insT	p.L2279fs	.	.	.
LAMA4	3910	broad.mit.edu	36	6	112615366	112615366	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001105207	exon8	c.C924T	p.N308N	.	.	.
HS3ST5	222537	broad.mit.edu	36	6	114485814	114485814	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153612	exon2	c.C341T	p.P114L	.	.	.
GFOD1	54438	broad.mit.edu	36	6	13473310	13473310	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018988	exon2	c.C817G	p.P273A	.	.	.
THBS2	7058	broad.mit.edu	36	6	169390678	169390678	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003247	exon4	c.C368T	p.T123M	.	.	.
KIF13A	63971	broad.mit.edu	36	6	17945791	17945791	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_022113	exon10	c.C833T	p.S278L	.	.	.
C6orf138	442213	broad.mit.edu	36	6	47955078	47955078	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001013732	exon3	c.C1461T	p.D487D	.	.	.
PKHD1	5314	broad.mit.edu	36	6	51983130	51983130	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_170724	exon35	c.C5687T	p.T1896M	.	.	.
COL19A1	1310	broad.mit.edu	36	6	70703463	70703463	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001858	exon8	c.G813A	p.M271I	.	.	.
GABRR1	2569	broad.mit.edu	36	6	89964469	89964469	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002042	exon5	c.C561A	p.L187L	.	.	.
RELN	5649	broad.mit.edu	36	7	103024152	103024152	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005045	exon25	c.T3526C	p.F1176L	.	.	.
PLXNA4	91584	broad.mit.edu	36	7	131481960	131481960	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020911	exon28	c.G4904A	p.R1635H	.	.	.
PURB	5814	broad.mit.edu	36	7	44890867	44890867	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033224	exon1	c.C606T	p.G202G	.	.	.
GTF2IRD1	9569	broad.mit.edu	36	7	73582120	73582120	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005685	exon9	c.A1211T	p.Y404F	.	.	.
ABCB4	5244	broad.mit.edu	36	7	86917300	86917300	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018849	exon8	c.753delA	p.K251fs	.	.	.
RIMS2	9699	broad.mit.edu	36	8	105018097	105018097	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001100117	exon13	c.C2518T	p.R840X	.	.	.
ABRA	137735	broad.mit.edu	36	8	107851582	107851582	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_139166	exon1	c.G13A	p.E5K	.	.	.
TSTA3	7264	broad.mit.edu	36	8	144768116	144768116	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003313	exon4	c.C374T	p.P125L	.	.	.
KCNB2	9312	broad.mit.edu	36	8	73643008	73643008	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004770	exon2	c.G485A	p.R162Q	.	.	.
RNF20	56254	broad.mit.edu	36	9	103352719	103352719	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_019592	exon10	c.G1103A	p.R368Q	.	.	.
OR1L1	26737	broad.mit.edu	36	9	124463874	124463874	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005236	exon1	c.G59A	p.R20Q	.	.	.
SARDH	1757	broad.mit.edu	36	9	135586362	135586362	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007101	exon4	c.G576A	p.P192P	.	.	.
WDR85	92715	broad.mit.edu	36	9	139578819	139578819	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138778	exon8	c.G837A	p.T279T	.	.	.
GLIS3	169792	broad.mit.edu	36	9	4108504	4108504	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152629	exon3	c.C509T	p.T170M	.	.	.
RAB40AL	282808	broad.mit.edu	36	X	102079709	102079709	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001031834	exon1	c.C807T	p.N269N	.	.	.
CXorf57	55086	broad.mit.edu	36	X	105742536	105742536	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018015	exon1	c.G570A	p.A190A	.	.	.
PSMD10	5716	broad.mit.edu	36	X	107218721	107218721	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002814	exon2	c.T130C	p.L44L	.	.	.
RGAG1	57529	broad.mit.edu	36	X	109583863	109583863	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020769	exon3	c.C3362T	p.S1121L	.	.	.
THOC2	57187	broad.mit.edu	36	X	122582860	122582860	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001081550	exon31	c.G4045A	p.A1349T	.	.	.
SLC25A14	9016	broad.mit.edu	36	X	129310992	129310992	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003951	exon4	c.G404A	p.R135H	.	.	.
BMP15	9210	broad.mit.edu	36	X	50676165	50676165	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005448	exon2	c.A997G	p.N333D	.	.	.
FAM123B	139285	broad.mit.edu	36	X	63328403	63328403	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152424	exon2	c.C1489T	p.R497X	.	.	.
OTUD6A	139562	broad.mit.edu	36	X	69199565	69199565	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_207320	exon1	c.G466A	p.A156T	.	.	.
SSX6	280657	broad.mit.edu	36	X	47854817	47854817	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	.	.	.	.	.	.	.