Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
CNNM1	26507	broad.mit.edu	36	10	101110624	101110624	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020348	exon3	c.A1760C	p.K587T	.	.	.
MGEA5	10724	broad.mit.edu	36	10	103537188	103537188	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012215	exon15	c.A2537G	p.D846G	.	.	.
GPAM	57678	broad.mit.edu	36	10	113911439	113911439	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020918	exon15	c.C1470T	p.C490C	.	.	.
NRAP	4892	broad.mit.edu	36	10	115354524	115354524	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198060	exon35	c.A4061G	p.Q1354R	.	.	.
BAG3	9531	broad.mit.edu	36	10	121426586	121426586	+	Silent	SNP	C	G	G	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004281	exon4	c.C1530G	p.L510L	.	.	.
CUBN	8029	broad.mit.edu	36	10	16933257	16933257	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001081	exon60	c.C9646T	p.L3216F	.	.	.
C10orf71	118461	broad.mit.edu	36	10	50202111	50202111	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001135196	exon3	c.C1515T	p.D505D	.	.	.
NET1	10276	broad.mit.edu	36	10	5488831	5488831	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005863	exon10	c.A1503T	p.R501S	.	.	.
ITIH2	3698	broad.mit.edu	36	10	7803673	7803673	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002216	exon8	c.G794A	p.R265Q	.	.	.
TNKS2	80351	broad.mit.edu	36	10	93583663	93583663	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_025235	exon12	c.G1349A	p.R450H	.	.	.
OR6T1	219874	broad.mit.edu	36	11	123319221	123319221	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001005187	exon1	c.C535T	p.R179C	.	.	.
OR52K1	390036	broad.mit.edu	36	11	4467356	4467356	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005171	exon1	c.T650C	p.I217T	.	.	.
OR52L1	338751	broad.mit.edu	36	11	5964611	5964611	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005173	exon1	c.G126A	p.Q42Q	.	.	.
TAF6L	10629	broad.mit.edu	36	11	62306227	62306227	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006473	exon8	c.C673T	p.R225C	.	.	.
GPN3	51184	broad.mit.edu	36	12	109379767	109379767	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016301	exon4	c.C381T	p.L127L	.	.	.
BCL7A	605	broad.mit.edu	36	12	120953052	120953052	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020993	exon2	c.G156A	p.T52T	.	.	.
TMED2	10959	broad.mit.edu	36	12	122637385	122637385	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006815	exon2	c.A319T	p.M107L	.	.	.
PDZRN4	29951	broad.mit.edu	36	12	40253664	40253664	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001164595	exon10	c.G2816A	p.R939H	.	.	.
DIP2B	57609	broad.mit.edu	36	12	49419544	49419544	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_173602	exon36	c.G4262A	p.R1421H	.	.	.
CNPY2	10330	broad.mit.edu	36	12	54994993	54994993	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014255	exon3	c.T113C	p.L38P	.	.	.
NAV3	89795	broad.mit.edu	36	12	77036198	77036198	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014903	exon14	c.C3030T	p.L1010L	.	.	.
CEP290	80184	broad.mit.edu	36	12	87007076	87007076	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_025114	exon31	c.T3893A	p.L1298H	.	.	.
MYO16	23026	broad.mit.edu	36	13	108415157	108415157	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001198950	exon20	c.C2275T	p.R759X	.	.	.
PDS5B	23047	broad.mit.edu	36	13	32160606	32160606	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015032	exon13	c.C1369T	p.R457W	.	.	.
FREM2	341640	broad.mit.edu	36	13	38159957	38159957	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_207361	exon1	c.C476T	p.A159V	.	.	.
SPERT	220082	broad.mit.edu	36	13	45185387	45185387	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152719	exon3	c.G226A	p.A76T	.	.	.
GPC6	10082	broad.mit.edu	36	13	93853306	93853306	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005708	exon9	c.G1502T	p.C501F	.	.	.
TECPR2	9895	broad.mit.edu	36	14	101974144	101974144	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014844	exon10	c.C2427A	p.P809P	.	.	.
FLVCR2	55640	broad.mit.edu	36	14	75115073	75115073	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017791	exon1	c.T5G	p.V2G	.	.	.
SNW1	22938	broad.mit.edu	36	14	77254373	77254373	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012245	exon14	c.C1422T	p.P474P	.	.	.
CCDC88C	440193	broad.mit.edu	36	14	90849771	90849771	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080414	exon15	c.G2142A	p.E714E	.	.	.
SERPINA10	51156	broad.mit.edu	36	14	93826269	93826269	+	Missense_Mutation	SNP	C	T	T	rs56137907	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016186	exon2	c.G415A	p.G139R	.	.	.
ATP10A	57194	broad.mit.edu	36	15	23475956	23475956	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024490	exon21	c.G4125A	p.M1375I	.	.	.
AQR	9716	broad.mit.edu	36	15	33006593	33006593	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014691	exon13	c.T1053A	p.F351L	.	.	.
MAPKBP1	23005	broad.mit.edu	36	15	39898366	39898366	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014994	exon20	c.G2210A	p.R737H	.	.	.
DUOX2	50506	broad.mit.edu	36	15	43179561	43179561	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014080	exon24	c.G3163A	p.V1055M	.	.	.
RBBP6	5930	broad.mit.edu	36	16	24491167	24491167	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018703	exon17	c.G5177A	p.S1726N	.	.	.
DCTPP1	79077	broad.mit.edu	36	16	30347931	30347931	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024096	exon2	c.C160T	p.R54W	.	.	.
TUSC5	286753	broad.mit.edu	36	17	1145656	1145656	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_172367	exon2	c.T509A	p.V170D	.	.	.
CPD	1362	broad.mit.edu	36	17	25815808	25815808	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001199775	exon21	c.G3252A	p.K1084K	.	.	.
SLFN5	162394	broad.mit.edu	36	17	30610424	30610424	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_144975	exon2	c.C602T	p.S201L	.	.	.
MEOX1	4222	broad.mit.edu	36	17	39094067	39094067	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004527	exon1	c.T362C	p.L121P	.	.	.
ITGB4	3691	broad.mit.edu	36	17	71258473	71258473	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005731	exon29	c.G3592A	p.A1198T	.	.	.
DNAH2	146754	broad.mit.edu	36	17	7610421	7610421	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020877	exon21	c.C3572G	p.A1191G	.	.	.
SMAD2	4087	broad.mit.edu	36	18	43622209	43622209	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001135937	exon10	c.C1301A	p.S434X	.	.	.
ZNF532	55205	broad.mit.edu	36	18	54802495	54802495	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018181	exon11	c.G3723A	p.G1241G	.	.	.
LAMA1	284217	broad.mit.edu	36	18	6998592	6998592	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005559	exon28	c.A4017T	p.S1339S	.	.	.
ZNF208	7757	broad.mit.edu	36	19	21947603	21947603	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007153	exon4	c.A2073C	p.K691N	.	.	.
TSHZ3	57616	broad.mit.edu	36	19	36461180	36461180	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020856	exon2	c.G1359A	p.T453T	.	.	.
ZNF114	163071	broad.mit.edu	36	19	53481615	53481615	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153608	exon5	c.G922T	p.E308X	.	.	.
U2AF2	11338	broad.mit.edu	36	19	60864330	60864330	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_007279	exon5	c.G449A	p.R150H	.	.	.
NLRP4	147945	broad.mit.edu	36	19	61061823	61061823	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_134444	exon3	c.G1252A	p.D418N	.	.	.
ZIK1	284307	broad.mit.edu	36	19	62793533	62793533	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001010879	exon4	c.G542A	p.R181Q	.	.	.
TUBB4	10382	broad.mit.edu	36	19	6446587	6446587	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006087	exon4	c.G923C	p.G308A	.	.	.
ZNF560	147741	broad.mit.edu	36	19	9439277	9439277	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152476	exon10	c.G1346A	p.G449E	.	.	.
VCAM1	7412	broad.mit.edu	36	1	100969441	100969441	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001199834	exon6	c.G1118A	p.R373Q	.	.	.
KCND3	3752	broad.mit.edu	36	1	112326180	112326180	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004980	exon2	c.C692T	p.T231M	.	.	.
TRIM45	80263	broad.mit.edu	36	1	117462840	117462840	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001145635	exon2	c.G561A	p.K187K	.	.	.
TCHH	7062	broad.mit.edu	36	1	150347467	150347467	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007113	exon2	c.G4850A	p.R1617H	.	.	.
XPR1	9213	broad.mit.edu	36	1	179099607	179099607	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001135669	exon11	c.C1447T	p.R483W	.	.	.
RCOR3	55758	broad.mit.edu	36	1	209552882	209552882	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001136223	exon11	c.G1273A	p.A425T	.	.	.
ITPKB	3707	broad.mit.edu	36	1	224893960	224893960	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002221	exon6	c.G2474A	p.R825Q	.	.	.
GJA9	81025	broad.mit.edu	36	1	39113036	39113036	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_030772	exon2	c.G1322T	p.G441V	.	.	.
DPH2	1802	broad.mit.edu	36	1	44210771	44210771	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001039589	exon5	c.C759T	p.I253I	.	.	.
ZRANB2	9406	broad.mit.edu	36	1	71303406	71303406	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_203350	exon10	c.G932A	p.R311H	.	.	.
ATRN	8455	broad.mit.edu	36	20	3475935	3475935	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_139322	exon5	c.G742T	p.D248Y	.	.	.
SLC32A1	140679	broad.mit.edu	36	20	36789581	36789581	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_080552	exon2	c.G463A	p.A155T	.	.	.
GRIK1	2897	broad.mit.edu	36	21	29984118	29984118	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_175611	exon3	c.C345T	p.S115S	.	.	.
PATZ1	23598	broad.mit.edu	36	22	30070525	30070525	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032051	exon1	c.T1064G	p.V355G	.	.	.
A4GALT	53947	broad.mit.edu	36	22	41419377	41419377	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017436	exon3	c.C525T	p.S175S	.	.	.
LRP1B	53353	broad.mit.edu	36	2	140707308	140707308	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018557	exon91	c.C13717T	p.R4573X	.	.	.
LRP1B	53353	broad.mit.edu	36	2	140832066	140832066	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018557	exon74	c.C11347T	p.R3783X	.	.	.
PXDN	7837	broad.mit.edu	36	2	1663071	1663071	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012293	exon7	c.G631A	p.A211T	.	.	.
ALS2CR11	151254	broad.mit.edu	36	2	202060724	202060724	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152525	exon15	c.G1728A	p.P576P	.	.	.
GIGYF2	26058	broad.mit.edu	36	2	233334356	233334356	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001103148	exon7	c.C498T	p.D166D	.	.	.
ASXL2	55252	broad.mit.edu	36	2	25829980	25829980	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018263	exon10	c.C1069T	p.R357X	.	.	.
STON1-GTF2A1L	286749	broad.mit.edu	36	2	48750488	48750488	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006872	exon7	c.G1102A	p.D368N	.	.	.
CASR	846	broad.mit.edu	36	3	123458877	123458877	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000388	exon3	c.G445A	p.V149I	.	.	.
C3orf20	84077	broad.mit.edu	36	3	14720945	14720945	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001184958	exon7	c.C610T	p.R204C	.	.	.
PLSCR4	57088	broad.mit.edu	36	3	147394899	147394899	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020353	exon9	c.C979T	p.R327C	.	.	.
ZIC4	84107	broad.mit.edu	36	3	148603241	148603241	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001168378	exon2	c.C184T	p.R62X	.	.	.
CP	1356	broad.mit.edu	36	3	150387007	150387007	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000096	exon11	c.T2067G	p.P689P	.	.	.
GPR87	53836	broad.mit.edu	36	3	152495556	152495556	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_023915	exon3	c.C168A	p.S56R	.	.	.
KCNH8	131096	broad.mit.edu	36	3	19550031	19550031	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144633	exon16	c.G2760A	p.E920E	.	.	.
ACVR2B	93	broad.mit.edu	36	3	38494668	38494668	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001106	exon4	c.C403T	p.L135L	.	.	.
SCN5A	6331	broad.mit.edu	36	3	38567129	38567129	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001099405	exon27	c.G5684A	p.R1895H	.	.	.
RBM5	10181	broad.mit.edu	36	3	50106241	50106241	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005778	exon4	c.G268A	p.D90N	.	.	.
EMCN	51705	broad.mit.edu	36	4	101557299	101557299	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001159694	exon8	c.T648A	p.D216E	.	.	.
ANK2	287	broad.mit.edu	36	4	114486508	114486508	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020977	exon35	c.C4252T	p.R1418C	.	.	.
ANK2	287	broad.mit.edu	36	4	114494456	114494456	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001148	exon38	c.C5233T	p.P1745S	.	.	.
LRBA	987	broad.mit.edu	36	4	151731316	151731316	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006726	exon40	c.C6225T	p.A2075A	.	.	.
FSTL5	56884	broad.mit.edu	36	4	163174242	163174242	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020116	exon3	c.A145T	p.S49C	.	.	.
NEIL3	55247	broad.mit.edu	36	4	178518683	178518683	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018248	exon9	c.G1493A	p.R498H	.	.	.
FAM149A	25854	broad.mit.edu	36	4	187325173	187325173	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001006655	exon11	c.C1222T	p.R408X	.	.	.
APC	324	broad.mit.edu	36	5	112202140	112202140	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.G2896T	p.E966X	.	.	.
PCDHB2	56133	broad.mit.edu	36	5	140455863	140455863	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018936	exon1	c.C1305T	p.T435T	.	.	.
FBXL7	23194	broad.mit.edu	36	5	15981372	15981372	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012304	exon3	c.C501A	p.D167E	.	.	.
PDZD2	23037	broad.mit.edu	36	5	32124577	32124577	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_178140	exon19	c.A5266G	p.S1756G	.	.	.
ADCY2	108	broad.mit.edu	36	5	7842859	7842859	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020546	exon20	c.C2574T	p.N858N	.	.	.
COL19A1	1310	broad.mit.edu	36	6	70932565	70932566	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001858	exon37	c.2412_2413insC	p.G804fs	.	.	.
PTPRK	5796	broad.mit.edu	36	6	128427596	128427596	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002844	exon13	c.G2194C	p.A732P	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152791101	152791101	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033071	exon37	c.C4929T	p.Y1643Y	.	.	.
CCHCR1	54535	broad.mit.edu	36	6	31225895	31225896	+	Missense_Mutation	DNP	AC	GG	GG	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	AC	AC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001105563	exon8	c.1180_1181CC	.	.	.	.
CSNK2B	1460	broad.mit.edu	36	6	31745239	31745239	+	Nonsense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001320	exon6	c.A532T	p.R178X	.	.	.
FILIP1	27145	broad.mit.edu	36	6	76079230	76079230	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015687	exon5	c.C3038G	p.S1013C	.	.	.
MEST	4232	broad.mit.edu	36	7	129932029	129932029	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002402	exon12	c.C904T	p.R302W	.	.	.
CHRM2	1129	broad.mit.edu	36	7	136351104	136351104	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000739	exon4	c.G952A	p.E318K	.	.	.
BRAF	673	broad.mit.edu	36	7	140099605	140099605	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004333	exon15	c.T1799A	p.V600E	 BRAF,pituitary,NS,Substitution - Missense,0 	.	.
DGKB	1607	broad.mit.edu	36	7	14155344	14155344	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004080	exon25	c.G2352A	p.P784P	.	.	.
WBSCR17	64409	broad.mit.edu	36	7	70491220	70491220	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022479	exon3	c.C486T	p.N162N	.	.	.
CACNA2D1	781	broad.mit.edu	36	7	81481693	81481693	+	Nonsense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000722	exon13	c.T1182A	p.Y394X	.	.	.
KIAA1324L	222223	broad.mit.edu	36	7	86380360	86380360	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152748	exon13	c.G1327A	p.G443S	.	.	.
AKAP9	10142	broad.mit.edu	36	7	91469112	91469112	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_147185	exon8	c.C1945T	p.R649X	.	.	.
CYP7B1	9420	broad.mit.edu	36	8	65690234	65690234	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004820	exon4	c.C960T	p.D320D	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77927940	77927940	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024721	exon10	c.G6228A	p.P2076P	.	.	.
PKIA	5569	broad.mit.edu	36	8	79673260	79673260	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006823	exon3	c.C86T	p.S29F	.	.	.
BAAT	570	broad.mit.edu	36	9	103164806	103164806	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001701	exon4	c.G982A	p.D328N	.	.	.
RAD23B	5887	broad.mit.edu	36	9	109131685	109131685	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002874	exon10	c.C1157T	p.A386V	.	.	.
GTF3C5	9328	broad.mit.edu	36	9	134923102	134923102	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001122823	exon12	c.G1495T	p.E499X	.	.	.
HAUS6	54801	broad.mit.edu	36	9	19048052	19048052	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017645	exon16	c.C2713T	p.R905W	.	.	.
DMRTA1	63951	broad.mit.edu	36	9	22441794	22441794	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022160	exon2	c.C1399T	p.R467W	.	.	.
CD274	29126	broad.mit.edu	36	9	5455594	5455594	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014143	exon5	c.C778T	p.R260C	.	.	.
PRPS2	5634	broad.mit.edu	36	X	12727383	12727383	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001039091	exon2	c.G259T	p.A87S	.	.	.
TFDP3	51270	broad.mit.edu	36	X	132178864	132178864	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016521	exon1	c.G1090A	p.G364R	.	.	.
MAGEC1	9947	broad.mit.edu	36	X	140823346	140823346	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005462	exon4	c.T2490A	p.P830P	.	.	.
SYP	6855	broad.mit.edu	36	X	48941237	48941237	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003179	exon3	c.C108T	p.F36F	.	.	.
PAGE2	203569	broad.mit.edu	36	X	55133219	55133219	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_207339	exon2	c.G41A	p.R14K	.	.	.
POU3F4	5456	broad.mit.edu	36	X	82650507	82650507	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000307	exon1	c.C519T	p.G173G	.	.	.
KAL1	3730	broad.mit.edu	36	X	8498695	8498695	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000216	exon7	c.G907A	p.V303I	.	.	.