Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
GRK5	2869	broad.mit.edu	36	10	121202773	121202773	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005308	exon15	c.C1669T	p.R557W	.	.	.
PTEN	5728	broad.mit.edu	36	10	89682869	89682869	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000314	exon5	c.373delA	p.K125fs	 PTEN,central_nervous_system,brain,Substitution - Missense,+2 	.	.
DYNC2H1	79659	broad.mit.edu	36	11	102596680	102596680	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001377	exon57	c.G9065A	p.R3022K	.	.	.
USP28	57646	broad.mit.edu	36	11	113175257	113175257	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020886	exon25	c.G3149A	p.R1050Q	.	.	.
C11orf41	25758	broad.mit.edu	36	11	33530322	33530322	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012194	exon5	c.G2923T	p.E975X	.	.	.
DPP3	10072	broad.mit.edu	36	11	66019487	66019487	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005700	exon14	c.C1528T	p.R510W	.	.	.
SLC4A8	9498	broad.mit.edu	36	12	50140083	50140083	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001039960	exon8	c.C937T	p.R313C	.	.	.
VWF	7450	broad.mit.edu	36	12	5997796	5997796	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000552	exon28	c.A5049C	p.A1683A	.	.	.
CLEC4D	338339	broad.mit.edu	36	12	8559108	8559108	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_080387	exon2	c.G38A	p.G13D	.	.	.
PCDH17	27253	broad.mit.edu	36	13	57105404	57105404	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001040429	exon1	c.G723A	p.P241P	.	.	.
SNAPC1	6617	broad.mit.edu	36	14	61303412	61303413	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003082	exon2	c.194_195insT	p.Y65fs	.	.	.
LTBP2	4053	broad.mit.edu	36	14	74064981	74064981	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000428	exon12	c.G2326A	p.V776I	.	.	.
YLPM1	56252	broad.mit.edu	36	14	74349162	74349162	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_019589	exon11	c.G5426T	p.R1809L	.	.	.
APBA2	321	broad.mit.edu	36	15	27133549	27133549	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005503	exon3	c.C170T	p.A57V	.	.	.
FAM82A2	55177	broad.mit.edu	36	15	38823630	38823630	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018145	exon6	c.C817T	p.R273W	.	.	.
INO80	54617	broad.mit.edu	36	15	39124513	39124513	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017553	exon24	c.C2788T	p.R930C	.	.	.
IL21R	50615	broad.mit.edu	36	16	27367967	27367967	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_181079	exon10	c.C1545A	p.G515G	.	.	.
RLTPR	146206	broad.mit.edu	36	16	66243369	66243369	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001013838	exon26	c.T2633A	p.V878E	.	.	.
TUBG2	27175	broad.mit.edu	36	17	38068523	38068523	+	De_novo_Start_OutOfFrame	SNP	G	A	A	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016437	exon5	c.G406A	p.V136M	.	.	.
CALCOCO2	10241	broad.mit.edu	36	17	44274093	44274093	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005831	exon2	c.C25T	p.P9S	.	.	.
SMAD4	4089	broad.mit.edu	36	18	46845917	46845917	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005359	exon9	c.G1082A	p.R361H	 SMAD4,small_intestine,duodenum,Substitution - Missense,+1 	.	.
RAVER1	125950	broad.mit.edu	36	19	10294827	10294828	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_133452	exon5	c.1123_1124insG	p.K375fs	.	.	.
ARHGAP33	115703	broad.mit.edu	36	19	40971037	40971038	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_052948	exon21	c.3247_3248insG	p.R1083fs	.	.	.
LSM4	25804	broad.mit.edu	36	19	18284465	18284465	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012321	exon3	c.C93T	p.S31S	.	.	.
PSG8	440533	broad.mit.edu	36	19	47950379	47950379	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001130168	exon4	c.C823T	p.R275C	.	.	.
ZNF235	9310	broad.mit.edu	36	19	49483498	49483498	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004234	exon5	c.G1930A	p.V644I	.	.	.
WDR3	10885	broad.mit.edu	36	1	118281009	118281009	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006784	exon4	c.G476A	p.R159Q	.	.	.
PIP5K1A	8394	broad.mit.edu	36	1	149438164	149438164	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001135636	exon1	c.C68G	p.S23C	.	.	.
CREB3L4	148327	broad.mit.edu	36	1	152208470	152208470	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_130898	exon4	c.G458A	p.C153Y	.	.	.
PAPPA2	60676	broad.mit.edu	36	1	174830739	174830739	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020318	exon3	c.G1376T	p.S459I	.	.	.
CR1	1378	broad.mit.edu	36	1	205824839	205824839	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000651	exon33	c.G5525A	p.R1842H	.	.	.
ACTN2	88	broad.mit.edu	36	1	234991035	234991035	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001103	exon20	c.C2465T	p.T822M	.	.	.
OR2M2	391194	broad.mit.edu	36	1	246410073	246410073	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001004688	exon1	c.C163A	p.L55I	.	.	.
C1orf94	84970	broad.mit.edu	36	1	34439184	34439184	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032884	exon3	c.C664T	p.R222X	.	.	.
DNTTIP2	30836	broad.mit.edu	36	1	94115559	94115559	+	De_novo_Start_OutOfFrame	SNP	G	C	C	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014597	exon2	c.C520G	p.P174A	.	.	.
PTPRT	11122	broad.mit.edu	36	20	40534397	40534397	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_133170	exon8	c.T1373C	p.I458T	.	.	.
KCNG1	3755	broad.mit.edu	36	20	49060161	49060161	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002237	exon2	c.G122A	p.R41H	.	.	.
TAF4	6874	broad.mit.edu	36	20	60006096	60006096	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003185	exon14	c.A2995G	p.M999V	.	.	.
C20orf96	140680	broad.mit.edu	36	20	207048	207048	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153269	exon6	c.488delA	p.Y163fs	.	.	.
ADAMTS5	11096	broad.mit.edu	36	21	27259824	27259824	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007038	exon1	c.A758T	p.Q253L	.	.	.
IL17RA	23765	broad.mit.edu	36	22	15970518	15970519	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014339	exon13	c.2409_2410insC	p.Q803fs	.	.	.
MAP2	4133	broad.mit.edu	36	2	210302823	210302823	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031847	exon12	c.C1185T	p.G395G	.	.	.
IQCA1	79781	broad.mit.edu	36	2	237039031	237039031	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024726	exon6	c.G782A	p.R261H	.	.	.
CXCR7	57007	broad.mit.edu	36	2	237154083	237154083	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020311	exon2	c.C236T	p.T79M	.	.	.
THRB	7068	broad.mit.edu	36	3	24163205	24163205	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000461	exon6	c.T497A	p.F166Y	.	.	.
KLHL18	23276	broad.mit.edu	36	3	47339105	47339105	+	Missense_Mutation	SNP	G	T	T	rs62248948	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025010	exon3	c.G304T	p.A102S	.	.	.
APC	324	broad.mit.edu	36	5	112201603	112201603	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.C2359T	p.R787X	 APC,large_intestine,right,Substitution - Nonsense,0 	.	.
APC	324	broad.mit.edu	36	5	112203310	112203310	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.G4066T	p.E1356X	 APC,pancreas,NS,Substitution - coding silent,-2 	.	.
PGGT1B	5229	broad.mit.edu	36	5	114599990	114599990	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005023	exon5	c.G608C	p.S203T	.	.	.
PCDHGA10	56106	broad.mit.edu	36	5	140774649	140774649	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032090	exon1	c.G1723A	p.G575S	.	.	.
TRIM10	10107	broad.mit.edu	36	6	30236573	30236573	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006778	exon1	c.C42A	p.V14V	.	.	.
SYNGAP1	8831	broad.mit.edu	36	6	33516559	33516559	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006772	exon11	c.C1752T	p.I584I	.	.	.
GRM4	2914	broad.mit.edu	36	6	34167675	34167675	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000841	exon2	c.C699T	p.S233S	.	.	.
RPL10A	4736	broad.mit.edu	36	6	35546025	35546025	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_007104	exon5	c.402delC	p.F134fs	.	.	.
FOXP2	93986	broad.mit.edu	36	7	114081301	114081301	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_148899	exon9	c.G1267A	p.V423I	.	.	.
RAPGEF5	9771	broad.mit.edu	36	7	22226051	22226051	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012294	exon9	c.T496G	p.F166V	.	.	.
INHBA	3624	broad.mit.edu	36	7	41696301	41696301	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002192	exon3	c.C753T	p.G251G	.	.	.
GTF2IRD1	9569	broad.mit.edu	36	7	73609928	73609928	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005685	exon20	c.C2047T	p.R683W	.	.	.
HEPACAM2	253012	broad.mit.edu	36	7	92686393	92686393	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198151	exon1	c.T351C	p.N117N	.	.	.
CSMD3	114788	broad.mit.edu	36	8	113598517	113598517	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198123	exon28	c.C4678A	p.L1560I	.	.	.
GRINA	2907	broad.mit.edu	36	8	145138728	145138728	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000837	exon6	c.C930T	p.I310I	.	.	.
LAPTM4B	55353	broad.mit.edu	36	8	98906527	98906527	+	Silent	SNP	C	G	G	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018407	exon6	c.C846G	p.V282V	.	.	.
TAF1L	138474	broad.mit.edu	36	9	32622840	32622840	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_153809	exon1	c.C2738A	p.A913E	.	.	.
SLITRK4	139065	broad.mit.edu	36	X	142544973	142544973	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_173078	exon2	c.G1618T	p.V540L	.	.	.
P2RY4	5030	broad.mit.edu	36	X	69395248	69395248	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002565	exon1	c.C952T	p.R318C	.	.	.
P2RY4	5030	broad.mit.edu	36	X	69395608	69395608	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002565	exon1	c.G592T	p.V198L	.	.	.
CXorf65	158830	broad.mit.edu	36	X	70242941	70242941	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001025265	exon2	c.G86A	p.R29H	.	.	.
DIAPH2	1730	broad.mit.edu	36	X	95880397	95880397	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006729	exon3	c.G322C	p.D108H	.	.	.