Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target MGEA5 10724 broad.mit.edu 36 10 103553609 103553609 + Silent SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_012215 exon7 c.C909T p.L303L . . . C10orf76 79591 broad.mit.edu 36 10 103597283 103597283 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_024541 exon26 c.A2062G p.I688V . . . TCF7L2 6934 broad.mit.edu 36 10 114891005 114891005 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001146284 exon5 c.G556T p.E186X . . . HSPA12A 259217 broad.mit.edu 36 10 118424513 118424513 + Silent SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_025015 exon12 c.C1797T p.V599V . . . CPXM2 119587 broad.mit.edu 36 10 125511573 125511573 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_198148 exon11 c.G1582A p.D528N . . . CHST15 51363 broad.mit.edu 36 10 125795379 125795379 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_015892 exon2 c.G340A p.G114R . . . CUBN 8029 broad.mit.edu 36 10 17010259 17010259 + Silent SNP G T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001081 exon41 c.C6174A p.I2058I . . . MLLT10 8028 broad.mit.edu 36 10 21924355 21924355 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001195626 exon4 c.C385T p.P129S . . . GPR158 57512 broad.mit.edu 36 10 25917990 25917990 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_020752 exon8 c.G1802A p.R601Q . . . LDB3 11155 broad.mit.edu 36 10 88431394 88431394 + Silent SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001080115 exon4 c.C543T p.L181L . . . ARHGAP20 57569 broad.mit.edu 36 11 110066530 110066530 + Silent SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_020809 exon3 c.C138T p.S46S . . . HYOU1 10525 broad.mit.edu 36 11 118430930 118430930 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_006389 exon6 c.C472T p.R158C . . . ARHGEF12 23365 broad.mit.edu 36 11 119857214 119857214 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001198665 exon38 c.C4216A p.Q1406K . . . KIRREL3 84623 broad.mit.edu 36 11 125838391 125838391 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_032531 exon6 c.C613T p.R205W . . . KRTAP5-5 439915 broad.mit.edu 36 11 1607805 1607805 + Silent SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001001480 exon1 c.G159A p.A53A . . . KCNA4 3739 broad.mit.edu 36 11 29990694 29990694 + Silent SNP G C C novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002233 exon2 c.C108G p.S36S . . . OR51I2 390064 broad.mit.edu 36 11 5432192 5432192 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001004754 exon1 c.C898T p.R300C . . . NPAS4 266743 broad.mit.edu 36 11 65945386 65945386 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_178864 exon1 c.G160A p.V54I . . . CABP4 57010 broad.mit.edu 36 11 66980403 66980403 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_145200 exon3 c.G455A p.R152Q . . . FOLR1 2348 broad.mit.edu 36 11 71584339 71584339 + Silent SNP C T T rs61735636 unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_016724 exon5 c.C393T p.N131N . . . OR5P2 120065 broad.mit.edu 36 11 7775056 7775056 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_153444 exon1 c.C10A p.L4M . . . DNAH10 196385 broad.mit.edu 36 12 122943746 122943746 + Silent SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_207437 exon52 c.G8655A p.A2885A . . . PDE3A 5139 broad.mit.edu 36 12 20657677 20657677 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_000921 exon3 c.G1045A p.V349I . . . KRAS 3845 broad.mit.edu 36 12 25289551 25289551 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004985 exon2 c.G35A p.G12D KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 . . SSPN 8082 broad.mit.edu 36 12 26268570 26268570 + Silent SNP T C C novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001135823 exon2 c.T48C p.F16F . . . TMTC1 83857 broad.mit.edu 36 12 29648470 29648470 + Silent SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001193451 exon7 c.C1158T p.G386G . . . LRRK2 120892 broad.mit.edu 36 12 38979269 38979269 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_198578 exon25 c.A3439T p.N1147Y . . . ARID2 196528 broad.mit.edu 36 12 44532824 44532824 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_152641 exon15 c.G4651A p.A1551T . . . KRT85 3891 broad.mit.edu 36 12 51045102 51045102 + Silent SNP C A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002283 exon2 c.G540T p.R180R . . . ERBB3 2065 broad.mit.edu 36 12 54765121 54765121 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001005915 exon3 c.G310A p.V104M ERBB3,ovary,NS,Substitution - Missense,0 . . CD163 9332 broad.mit.edu 36 12 7531878 7531878 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_203416 exon7 c.C1493A p.T498K . . . ACSS3 79611 broad.mit.edu 36 12 80069921 80069921 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_024560 exon7 c.C1013A p.A338E . . . A2ML1 144568 broad.mit.edu 36 12 8882243 8882243 + Silent SNP C A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_144670 exon9 c.C900A p.T300T . . . UGGT2 55757 broad.mit.edu 36 13 95351161 95351162 + Frame_Shift_Ins INS - T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 - - - T - - Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_020121 exon22 c.2535_2536insA p.Y845_N846delinsX . . . IFT88 8100 broad.mit.edu 36 13 20135643 20135643 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_175605 exon25 c.G2102A p.R701H . . . SACS 26278 broad.mit.edu 36 13 22809660 22809660 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_014363 exon10 c.C6355T p.R2119X . . . SLITRK5 26050 broad.mit.edu 36 13 87127551 87127551 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_015567 exon2 c.C1907T p.A636V . . . AHNAK2 113146 broad.mit.edu 36 14 104483408 104483408 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 T T T T T T Unknown Wildtype None Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_138420 exon7 c.A9425G p.K3142R . . . SALL2 6297 broad.mit.edu 36 14 21062525 21062525 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_005407 exon2 c.C1177T p.R393C . . . RABGGTA 5875 broad.mit.edu 36 14 23809394 23809394 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004581 exon3 c.G225T p.Q75H . . . MDGA2 161357 broad.mit.edu 36 14 46670757 46670757 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001113498 exon5 c.G835T p.D279Y . . . FLRT2 23768 broad.mit.edu 36 14 85158802 85158802 + Silent SNP T A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_013231 exon2 c.T1191A p.P397P . . . KIAA1409 57578 broad.mit.edu 36 14 93226287 93226287 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_020818 exon46 c.A6743C p.H2248P . . . TMCO5A 145942 broad.mit.edu 36 15 36016365 36016365 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_152453 exon3 c.C166T p.R56W . . . CGNL1 84952 broad.mit.edu 36 15 55517745 55517745 + Silent SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032866 exon2 c.C256T p.L86L . . . CHRNA5 1138 broad.mit.edu 36 15 76669340 76669340 + Silent SNP T C C novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000745 exon5 c.T552C p.C184C . . . BNC1 646 broad.mit.edu 36 15 81726687 81726687 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001717 exon3 c.C340T p.R114W . . . RAB40C 57799 broad.mit.edu 36 16 617580 617581 + Frame_Shift_Ins INS - C C novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 - - - - - - Unknown Wildtype None Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001172664 exon7 c.803_804insC p.S268fs . . . PKD1L2 114780 broad.mit.edu 36 16 79742994 79742995 + Frame_Shift_Ins INS - A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 - - - A - A Unknown Valid Germline Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_052892 exon27 c.4432_4433insT p.D1478_L1479delinsX . . . CREBBP 1387 broad.mit.edu 36 16 3764676 3764676 + Silent SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004380 exon12 c.C2178T p.P726P . . . SLC6A2 6530 broad.mit.edu 36 16 54263377 54263377 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001172504 exon3 c.G433A p.A145T . . . CDH8 1006 broad.mit.edu 36 16 60245068 60245068 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001796 exon12 c.G2345A p.R782H . . . KCTD19 146212 broad.mit.edu 36 16 65887590 65887590 + Silent SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001100915 exon8 c.C1221T p.Y407Y . . . RBFOX1 54715 broad.mit.edu 36 16 7666833 7666833 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_145893 exon11 c.C1050A p.Y350X . . . KLHL10 317719 broad.mit.edu 36 17 37247778 37247778 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_152467 exon1 c.C68T p.A23V . . . AMAC1L3 643664 broad.mit.edu 36 17 7326754 7326754 + Missense_Mutation SNP C T T rs71360891 unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001102614 exon2 c.C727T p.P243S . . . USP36 57602 broad.mit.edu 36 17 74343825 74343825 + Silent SNP G T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_025090 exon3 c.C216A p.R72R . . . SERPINB11 89778 broad.mit.edu 36 18 59539062 59539062 + Silent SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_080475 exon7 c.G636A p.V212V . . . PIK3R2 5296 broad.mit.edu 36 19 18134104 18134105 + Frame_Shift_Ins INS - GG GG novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005027 exon8 c.994_995insGG p.W332fs . . . HOOK2 29911 broad.mit.edu 36 19 12736856 12736856 + Silent SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001100176 exon18 c.G1674A p.K558K . . . NFIX 4784 broad.mit.edu 36 19 13062145 13062145 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002501 exon9 c.C1287T p.T429T . . . OR10H5 284433 broad.mit.edu 36 19 15765971 15765971 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001004466 exon1 c.C113T p.T38M . . . SLC35E1 79939 broad.mit.edu 36 19 16525644 16525644 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_024881 exon6 c.G1079A p.R360H . . . SLC35E1 79939 broad.mit.edu 36 19 16539926 16539926 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_024881 exon3 c.G547A p.E183K . . . HNRNPL 3191 broad.mit.edu 36 19 44022616 44022616 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001005335 exon8 c.G794A p.R265Q . . . LIPE 3991 broad.mit.edu 36 19 47604018 47604018 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_005357 exon4 c.G1606A p.V536M . . . PSG1 5669 broad.mit.edu 36 19 48075540 48075540 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_006905 exon1 c.C34A p.R12S . . . IRGC 56269 broad.mit.edu 36 19 48915541 48915541 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_019612 exon2 c.C991T p.R331C . . . EXOC3L2 90332 broad.mit.edu 36 19 50426912 50426912 + Silent SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_138568 exon2 c.C39T p.L13L . . . ZNF808 388558 broad.mit.edu 36 19 57750382 57750382 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001039886 exon5 c.G2401A p.V801M . . . ZNF160 90338 broad.mit.edu 36 19 58263681 58263681 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_198893 exon7 c.C1918T p.R640W . . . NLRP4 147945 broad.mit.edu 36 19 61070961 61070961 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_134444 exon6 c.C2261T p.T754M . . . NLRP13 126204 broad.mit.edu 36 19 61115052 61115052 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_176810 exon5 c.A1943G p.E648G . . . AKNAD1 254268 broad.mit.edu 36 1 109179080 109179080 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_152763 exon8 c.C1658T p.P553L . . . GJA8 2703 broad.mit.edu 36 1 145847871 145847871 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_005267 exon2 c.G1165A p.E389K . . . IGSF9 57549 broad.mit.edu 36 1 158167884 158167884 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001135050 exon12 c.C1496T p.T499M . . . TAS1R2 80834 broad.mit.edu 36 1 19053563 19053563 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_152232 exon3 c.G988A p.V330M . . . KCNK2 3776 broad.mit.edu 36 1 213326470 213326470 + Silent SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001017424 exon2 c.G171A p.T57T . . . ZBTB40 9923 broad.mit.edu 36 1 22700595 22700595 + Silent SNP T C C novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014870 exon4 c.T855C p.G285G . . . EPHA8 2046 broad.mit.edu 36 1 22800513 22800513 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020526 exon16 c.G2863A p.G955R . . . OR2L13 284521 broad.mit.edu 36 1 246329529 246329529 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_175911 exon3 c.G229A p.V77I . . . OR2T12 127064 broad.mit.edu 36 1 246524993 246524993 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001004692 exon1 c.G511A p.E171K . . . EIF2C3 192669 broad.mit.edu 36 1 36210342 36210342 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_024852 exon4 c.C443T p.P148L . . . HIVEP3 59269 broad.mit.edu 36 1 41763130 41763130 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_024503 exon6 c.G5246A p.R1749H . . . ZCCHC11 23318 broad.mit.edu 36 1 52735418 52735418 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001009881 exon5 c.G1025A p.R342H . . . DAB1 1600 broad.mit.edu 36 1 57253317 57253317 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_021080 exon14 c.C1271T p.P424L . . . TNNI3K 51086 broad.mit.edu 36 1 74592284 74592284 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001199327 exon13 c.C1363T p.R455C . . . PHACTR3 116154 broad.mit.edu 36 20 57763735 57763735 + Silent SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_080672 exon4 c.C462T p.P154P . . . KRTAP22-1 337979 broad.mit.edu 36 21 30895356 30895356 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_181620 exon1 c.G46T p.G16X . . . TPTE 7179 broad.mit.edu 36 21 9973204 9973204 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_199259 exon9 c.C325T p.R109C . . . PNPLA5 150379 broad.mit.edu 36 22 42611526 42611526 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_138814 exon7 c.C982T p.R328W . . . RIBC2 26150 broad.mit.edu 36 22 44200497 44200497 + Silent SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015653 exon5 c.C665T p.S222L . . . LONRF2 164832 broad.mit.edu 36 2 100273179 100273179 + Silent SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_198461 exon10 c.G1893A p.A631A . . . NPAS2 4862 broad.mit.edu 36 2 100947045 100947045 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_002518 exon8 c.G692A p.R231H . . . LRP1B 53353 broad.mit.edu 36 2 141357897 141357897 + Silent SNP G T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018557 exon25 c.C4128A p.A1376A . . . TPO 7173 broad.mit.edu 36 2 1486816 1486816 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_175719 exon13 c.G2305A p.A769T . . . SLC4A10 57282 broad.mit.edu 36 2 162459468 162459468 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001178016 exon11 c.C1171T p.R391C . . . SCN1A 6323 broad.mit.edu 36 2 166578568 166578568 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001165964 exon18 c.C3553T p.R1185X . . . GAD1 2571 broad.mit.edu 36 2 171395765 171395765 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_000817 exon5 c.G364T p.D122Y . . . WDR35 57539 broad.mit.edu 36 2 20037772 20037772 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001006657 exon7 c.C674T p.P225L . . . ERBB4 2066 broad.mit.edu 36 2 212274986 212274986 + Silent SNP T A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005235 exon12 c.A1440T p.T480T . . . TNS1 7145 broad.mit.edu 36 2 218421572 218421572 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_022648 exon17 c.C1538T p.A513V . . . TTLL4 9654 broad.mit.edu 36 2 219320131 219320131 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014640 exon9 c.C2136G p.S712R . . . COL4A4 1286 broad.mit.edu 36 2 227580397 227580397 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_000092 exon48 c.C4961T p.T1654M . . . CXCR7 57007 broad.mit.edu 36 2 237154805 237154805 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_020311 exon2 c.C958T p.R320C . . . PPP1CB 5500 broad.mit.edu 36 2 28853328 28853328 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_206876 exon3 c.T160G p.L54V . . . PRKCE 5581 broad.mit.edu 36 2 46065236 46065236 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_005400 exon6 c.G736A p.G246S . . . CCDC88A 55704 broad.mit.edu 36 2 55415585 55415585 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001135597 exon15 c.C1876T p.R626X . . . SERPINI1 5274 broad.mit.edu 36 3 168990987 168990988 + Frame_Shift_Ins INS - A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 - - - - - - Unknown Wildtype None Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001122752 exon3 c.384_385insA p.M128fs . . . KALRN 8997 broad.mit.edu 36 3 125656788 125656788 + Silent SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003947 exon22 c.G3621A p.T1207T . . . EPHB1 2047 broad.mit.edu 36 3 136334263 136334263 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_004441 exon5 c.C979T p.R327C . . . C3orf43 255798 broad.mit.edu 36 3 197719192 197719192 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001077657 exon3 c.C608A p.S203X . . . ITPR1 3708 broad.mit.edu 36 3 4727034 4727034 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001099952 exon38 c.G4841A p.R1614H . . . ROBO2 6092 broad.mit.edu 36 3 77734108 77734108 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001128929 exon19 c.G2853A p.W951X . . . SEC24B 10427 broad.mit.edu 36 4 110667942 110667942 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_006323 exon18 c.G2981A p.R994K . . . ALPK1 80216 broad.mit.edu 36 4 113580435 113580435 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_025144 exon14 c.T3496A p.Y1166N . . . DDX60 55601 broad.mit.edu 36 4 169441229 169441229 + Silent SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_017631 exon13 c.G1665A p.V555V . . . LRRC66 339977 broad.mit.edu 36 4 52555701 52555701 + Silent SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001024611 exon4 c.G2244A p.T748T . . . KDR 3791 broad.mit.edu 36 4 55666838 55666838 + Silent SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002253 exon12 c.G1563A p.A521A . . . FRAS1 80144 broad.mit.edu 36 4 79457624 79457624 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_025074 exon17 c.G1898A p.R633H . . . NUDT12 83594 broad.mit.edu 36 5 102915852 102915852 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_031438 exon6 c.G1243A p.E415K . . . APC 324 broad.mit.edu 36 5 112144491 112144491 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001127511 exon5 c.C667T p.R223X APC,large_intestine,rectum,Substitution - Nonsense,0 . . TRPC7 57113 broad.mit.edu 36 5 135720463 135720463 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_020389 exon2 c.C512T p.A171V . . . DNAH5 1767 broad.mit.edu 36 5 13767550 13767550 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001369 exon75 c.G13089T p.M4363I . . . PCDHB1 29930 broad.mit.edu 36 5 140412361 140412361 + Silent SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_013340 exon1 c.G1122A p.R374R . . . PCDHB1 29930 broad.mit.edu 36 5 140412719 140412719 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_013340 exon1 c.C1480A p.P494T . . . PCDHGA6 56109 broad.mit.edu 36 5 140735446 140735446 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_032086 exon1 c.G1612A p.G538R . . . ODZ2 57451 broad.mit.edu 36 5 167550047 167550047 + Silent SNP G T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001122679 exon14 c.G2670T p.V890V . . . HCN1 348980 broad.mit.edu 36 5 45298240 45298240 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_021072 exon8 c.T2213C p.V738A . . . IQGAP2 10788 broad.mit.edu 36 5 76032715 76032715 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_006633 exon34 c.G4426A p.A1476T . . . CMYA5 202333 broad.mit.edu 36 5 79068271 79068271 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_153610 exon2 c.C7927T p.R2643C . . . VCAN 1462 broad.mit.edu 36 5 82853723 82853723 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001164098 exon7 c.C3842T p.T1281M . . . LYRM2 57226 broad.mit.edu 36 6 90403735 90403736 + Frame_Shift_Ins INS - T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020466 exon3 c.245_246insA p.T82fs . . . TXLNB 167838 broad.mit.edu 36 6 139605916 139605916 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_153235 exon10 c.G1495A p.A499T . . . GRM1 2911 broad.mit.edu 36 6 146522299 146522299 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001114329 exon3 c.C823T p.R275C . . . UHRF1BP1 54887 broad.mit.edu 36 6 34932679 34932679 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_017754 exon11 c.C1426T p.H476Y . . . TRERF1 55809 broad.mit.edu 36 6 42341479 42341479 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_033502 exon6 c.C1472T p.S491F . . . KLC4 89953 broad.mit.edu 36 6 43137076 43137076 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_201521 exon2 c.C25T p.R9W . . . EXOC2 55770 broad.mit.edu 36 6 509658 509658 + Silent SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018303 exon15 c.C1554T p.R518R . . . PHF3 23469 broad.mit.edu 36 6 64452417 64452417 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_015153 exon3 c.A835G p.K279E . . . FILIP1 27145 broad.mit.edu 36 6 76081514 76081514 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_015687 exon5 c.G754A p.D252N . . . RELN 5649 broad.mit.edu 36 7 102972891 102972891 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_005045 exon42 c.A6439G p.K2147E . . . SLC26A3 1811 broad.mit.edu 36 7 107204148 107204148 + Silent SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000111 exon15 c.G1662A p.R554R . . . NRCAM 4897 broad.mit.edu 36 7 107625655 107625655 + Silent SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001037132 exon11 c.C1332T p.N444N . . . FLNC 2318 broad.mit.edu 36 7 128279999 128279999 + Silent SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001458 exon36 c.C5961T p.N1987N . . . PLXNA4 91584 broad.mit.edu 36 7 131522891 131522891 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_020911 exon15 c.G2872T p.D958Y . . . CHRM2 1129 broad.mit.edu 36 7 136351294 136351294 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_000739 exon4 c.G1142A p.R381Q . . . OR2A5 393046 broad.mit.edu 36 7 143379095 143379095 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_012365 exon1 c.C668T p.A223V . . . SSPO 23145 broad.mit.edu 36 7 149160839 149160839 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_198455 exon102 c.C15339T p.P5113P . . . CHPF2 54480 broad.mit.edu 36 7 150563267 150563267 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_019015 exon2 c.G464A p.R155Q . . . EIF2AK1 27102 broad.mit.edu 36 7 6050722 6050722 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001134335 exon7 c.C727T p.R243X . . . POM121C 100101267 broad.mit.edu 36 7 74890323 74890323 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001099415 exon13 c.T1148C p.L383P . . . RP1L1 94137 broad.mit.edu 36 8 10504490 10504490 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_178857 exon4 c.G4528A p.A1510T . . . FAM135B 51059 broad.mit.edu 36 8 139218662 139218662 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_015912 exon19 c.G3925A p.V1309M . . . COL22A1 169044 broad.mit.edu 36 8 139925547 139925547 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_152888 exon4 c.G695A p.R232H . . . TRAPPC9 83696 broad.mit.edu 36 8 140991590 140991590 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001160372 exon20 c.G2947A p.G983S . . . PREX2 80243 broad.mit.edu 36 8 69113014 69113014 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_025170 exon7 c.G772T p.G258X . . . TNC 3371 broad.mit.edu 36 9 116848713 116848713 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_002160 exon17 c.C4922A p.T1641K . . . PSMD5 5711 broad.mit.edu 36 9 122635435 122635435 + Silent SNP A T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005047 exon2 c.T294A p.S98S . . . SLC25A25 114789 broad.mit.edu 36 9 129909466 129909466 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001006643 exon10 c.G1023T p.M341I . . . FNBP1 23048 broad.mit.edu 36 9 131702101 131702101 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_015033 exon15 c.G1651A p.A551T . . . GBA2 57704 broad.mit.edu 36 9 35728792 35728792 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020944 exon12 c.C1904T p.T635M . . . AK3 50808 broad.mit.edu 36 9 4708526 4708526 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001199854 exon4 c.C456G p.D152E . . . VPS13A 23230 broad.mit.edu 36 9 79032898 79032898 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001018037 exon17 c.C1493A p.S498Y . . . FBP2 8789 broad.mit.edu 36 9 96369454 96369454 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_003837 exon5 c.G624T p.K208N . . . NCBP1 4686 broad.mit.edu 36 9 99442977 99442977 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002486 exon2 c.G115A p.G39R . . . ARMCX5 64860 broad.mit.edu 36 X 101745382 101745382 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001168485 exon5 c.C1657T p.R553X . . . NRK 203447 broad.mit.edu 36 X 105040170 105040170 + Silent SNP A T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_198465 exon13 c.A1881T p.L627L . . . GRIA3 2892 broad.mit.edu 36 X 122147478 122147478 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_007325 exon2 c.G223A p.V75I . . . FRMPD4 9758 broad.mit.edu 36 X 12645744 12645744 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_014728 exon16 c.G2878A p.A960T . . . SLC9A6 10479 broad.mit.edu 36 X 134920373 134920373 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G C G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001177651 exon8 c.G850C p.A284P . . . SLC9A6 10479 broad.mit.edu 36 X 134950004 134950004 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001177651 exon16 c.G1675A p.E559K . . . BRS3 680 broad.mit.edu 36 X 135400302 135400302 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001727 exon2 c.G779A p.R260H . . . MAGEA4 4103 broad.mit.edu 36 X 150843483 150843483 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G C G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_002362 exon3 c.G691C p.V231L . . . IL9R 3581 broad.mit.edu 36 X 154885862 154885862 + Silent SNP C G G novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002186 exon2 c.C126G p.V42V . . . FAM47A 158724 broad.mit.edu 36 X 34060100 34060100 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_203408 exon1 c.C217T p.R73C . . . PJA1 64219 broad.mit.edu 36 X 68298132 68298132 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001032396 exon2 c.G1510A p.A504T . . . MAGEE1 57692 broad.mit.edu 36 X 75565726 75565726 + Silent SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020932 exon1 c.G999A p.P333P . . . PGK1 5230 broad.mit.edu 36 X 77265455 77265455 + Silent SNP T C C novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000291 exon8 c.T864C p.T288T . . . KLHL4 56062 broad.mit.edu 36 X 86759664 86759664 + Silent SNP C G G novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C C G C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_057162 exon4 c.C801G p.V267V . . . TBL1X 6907 broad.mit.edu 36 X 9619688 9619688 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001139468 exon8 c.G533A p.R178Q . . . TBL1X 6907 broad.mit.edu 36 X 9644278 9644278 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3695-01A-01W-0900-09 TCGA-AA-3695-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001139468 exon18 c.C1573T p.R525W . . .