Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
SUFU	51684	broad.mit.edu	36	10	104253963	104253964	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178133	exon1	c.64_65insC	p.A22fs	.	.	.
RBM20	282996	broad.mit.edu	36	10	112585659	112585660	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	-	-	-	G	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134363	exon14	c.3617_3618insG	p.E1206fs	.	.	.
HPS1	3257	broad.mit.edu	36	10	100167437	100167437	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000195	exon20	c.C1977T	p.T659T	.	.	.
HPSE2	60495	broad.mit.edu	36	10	100209409	100209409	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166245	exon10	c.G1355A	p.R452Q	.	.	.
HPSE2	60495	broad.mit.edu	36	10	100239882	100239882	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166246	exon10	c.T1382C	p.V461A	.	.	.
GOT1	2805	broad.mit.edu	36	10	101170418	101170418	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002079	exon2	c.T253G	p.S85A	.	.	.
ABCC2	1244	broad.mit.edu	36	10	101580057	101580057	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000392	exon20	c.A2624G	p.H875R	.	.	.
PDZD7	79955	broad.mit.edu	36	10	102768707	102768707	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195263	exon8	c.G1186A	p.A396T	.	.	.
PPRC1	23082	broad.mit.edu	36	10	103897135	103897135	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015062	exon9	c.C4396T	p.R1466X	.	.	.
PITX3	5309	broad.mit.edu	36	10	103981518	103981518	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005029	exon3	c.T138C	p.A46A	.	.	.
CNNM2	54805	broad.mit.edu	36	10	104825894	104825894	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199076	exon6	c.C2229T	p.S743S	.	.	.
CALHM2	51063	broad.mit.edu	36	10	105199233	105199233	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015916	exon3	c.C456T	p.H152H	.	.	.
NRAP	4892	broad.mit.edu	36	10	115375825	115375825	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198060	exon21	c.G2215A	p.A739T	.	.	.
NRAP	4892	broad.mit.edu	36	10	115413621	115413621	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198060	exon1	c.A11G	p.Q4R	.	.	.
USP6NL	9712	broad.mit.edu	36	10	11545246	11545246	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014688	exon15	c.G1687A	p.A563T	.	.	.
C10orf118	55088	broad.mit.edu	36	10	115884693	115884693	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018017	exon10	c.A1624G	p.T542A	.	.	.
TDRD1	56165	broad.mit.edu	36	10	115940728	115940728	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198795	exon3	c.C344A	p.P115Q	.	.	.
HSPA12A	259217	broad.mit.edu	36	10	118431354	118431354	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025015	exon8	c.G860A	p.R287Q	.	.	.
CUZD1	50624	broad.mit.edu	36	10	124584292	124584292	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022034	exon7	c.T1302A	p.N434K	.	.	.
CAMK1D	57118	broad.mit.edu	36	10	12906529	12906529	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020397	exon9	c.G893A	p.R298Q	.	.	.
PPP2R2D	55844	broad.mit.edu	36	10	133619190	133619190	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018461	exon7	c.C997T	p.R333W	.	.	.
CACNB2	783	broad.mit.edu	36	10	18868499	18868499	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201596	exon14	c.G1823A	p.R608H	.	.	.
KIAA1217	56243	broad.mit.edu	36	10	24849130	24849130	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019590	exon11	c.C2250T	p.D750D	.	.	.
KIAA1217	56243	broad.mit.edu	36	10	24862130	24862130	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019590	exon16	c.G3372A	p.E1124E	.	.	.
MYO3A	53904	broad.mit.edu	36	10	26495039	26495039	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017433	exon27	c.C3037T	p.R1013C	.	.	.
KIAA1462	57608	broad.mit.edu	36	10	30358288	30358288	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020848	exon3	c.C795T	p.C265C	.	.	.
MAP3K8	1326	broad.mit.edu	36	10	30787111	30787111	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005204	exon7	c.G966A	p.T322T	.	.	.
FZD8	8325	broad.mit.edu	36	10	35970089	35970089	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031866	exon1	c.A275G	p.Y92C	.	.	.
ZNF37A	7587	broad.mit.edu	36	10	38443798	38443798	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007094	exon6	c.G125A	p.S42N	.	.	.
C10orf18	54906	broad.mit.edu	36	10	5824343	5824343	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017782	exon14	c.C2605T	p.R869C	.	.	.
ANK3	288	broad.mit.edu	36	10	61500735	61500735	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020987	exon37	c.C9910T	p.P3304S	.	.	.
EGR2	1959	broad.mit.edu	36	10	64243433	64243433	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000399	exon2	c.G971A	p.R324H	.	.	.
SIRT1	23411	broad.mit.edu	36	10	69337823	69337823	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142498	exon5	c.G220A	p.A74T	.	.	.
SUPV3L1	6832	broad.mit.edu	36	10	70619185	70619185	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003171	exon5	c.G729C	p.K243N	.	.	.
HK1	3098	broad.mit.edu	36	10	70822036	70822036	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033498	exon18	c.G2197T	p.V733L	.	.	.
SFMBT2	57713	broad.mit.edu	36	10	7358901	7358901	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001029880	exon7	c.A829G	p.I277V	.	.	.
ANXA7	310	broad.mit.edu	36	10	74813377	74813377	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001156	exon8	c.G711A	p.T237T	.	.	.
KIN	22944	broad.mit.edu	36	10	7862239	7862239	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012311	exon3	c.C247T	p.R83C	.	.	.
FAM190B	54462	broad.mit.edu	36	10	86120886	86120886	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018999	exon2	c.G98A	p.G33E	.	.	.
FAM190B	54462	broad.mit.edu	36	10	86121988	86121988	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018999	exon2	c.G1200A	p.S400S	.	.	.
LIPK	643414	broad.mit.edu	36	10	90502385	90502385	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080518	exon9	c.C1092T	p.Y364Y	.	.	.
CH25H	9023	broad.mit.edu	36	10	90956275	90956275	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003956	exon1	c.C755T	p.P252L	.	.	.
RPP30	10556	broad.mit.edu	36	10	92628823	92628823	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006413	exon5	c.G294A	p.R98R	.	.	.
BTAF1	9044	broad.mit.edu	36	10	93739199	93739199	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003972	exon20	c.G2736A	p.T912T	.	.	.
AVPI1	60370	broad.mit.edu	36	10	99429520	99429520	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021732	exon2	c.C133T	p.R45C	.	.	.
PDSS1	23590	broad.mit.edu	36	10	27064483	27064483	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014317	exon10	c.995delC	p.A332fs	.	.	.
YME1L1	10730	broad.mit.edu	36	10	27474425	27474425	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014263	exon3	c.269delA	p.N90fs	.	.	.
NPAT	4863	broad.mit.edu	36	11	107537911	107537912	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002519	exon17	c.3112_3113insG	p.K1038fs	.	.	.
PGR	5241	broad.mit.edu	36	11	100418026	100418026	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000926	exon7	c.C2506T	p.R836X	.	.	.
ANGPTL5	253935	broad.mit.edu	36	11	101281685	101281685	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178127	exon4	c.G345T	p.Q115H	.	.	.
MMP7	4316	broad.mit.edu	36	11	101903470	101903470	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002423	exon3	c.G479A	p.R160Q	.	.	.
MMP27	64066	broad.mit.edu	36	11	102080629	102080629	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022122	exon2	c.C190T	p.R64W	.	.	.
DYNC2H1	79659	broad.mit.edu	36	11	102573900	102573900	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001377	exon48	c.G7737T	p.R2579R	.	.	.
CASP1	834	broad.mit.edu	36	11	104402252	104402252	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033295	exon4	c.G210A	p.M70I	.	.	.
MRVI1	10335	broad.mit.edu	36	11	10572306	10572306	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001100163	exon16	c.C1757A	p.P586H	.	.	.
CUL5	8065	broad.mit.edu	36	11	107430709	107430709	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003478	exon6	c.G679C	p.V227L	.	.	.
EIF4G2	1982	broad.mit.edu	36	11	10784106	10784106	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001418	exon4	c.C172T	p.R58X	.	.	.
ZC3H12C	85463	broad.mit.edu	36	11	109541029	109541029	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033390	exon6	c.G2009A	p.R670H	.	.	.
ANKK1	255239	broad.mit.edu	36	11	112775511	112775511	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178510	exon8	c.G1610A	p.R537Q	.	.	.
CADM1	23705	broad.mit.edu	36	11	114605195	114605195	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014333	exon5	c.C569T	p.S190L	.	.	.
TMPRSS4	56649	broad.mit.edu	36	11	117491154	117491154	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001173551	exon11	c.C1095T	p.T365T	.	.	.
MLL	4297	broad.mit.edu	36	11	117877764	117877764	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005933	exon26	c.C6478T	p.R2160X	.	.	.
MLL	4297	broad.mit.edu	36	11	117881280	117881280	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005933	exon27	c.G9454A	p.G3152R	.	.	.
ARHGEF12	23365	broad.mit.edu	36	11	119807725	119807725	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198665	exon10	c.G762A	p.G254G	.	.	.
TECTA	7007	broad.mit.edu	36	11	120485216	120485216	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005422	exon3	c.C285T	p.F95F	.	.	.
TECTA	7007	broad.mit.edu	36	11	120505653	120505653	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005422	exon9	c.G2464A	p.V822M	.	.	.
CRTAM	56253	broad.mit.edu	36	11	122240631	122240631	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019604	exon7	c.A811G	p.T271A	.	.	.
PARVA	55742	broad.mit.edu	36	11	12491482	12491482	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018222	exon9	c.A917G	p.K306R	.	.	.
KIRREL3	84623	broad.mit.edu	36	11	125838322	125838322	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032531	exon6	c.C682T	p.R228C	.	.	.
B3GAT1	27087	broad.mit.edu	36	11	133759001	133759001	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_054025	exon3	c.G404A	p.R135H	.	.	.
PIK3C2A	5286	broad.mit.edu	36	11	17080796	17080796	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002645	exon23	c.C3840T	p.G1280G	.	.	.
MRGPRX4	117196	broad.mit.edu	36	11	18151663	18151663	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_054032	exon1	c.G284A	p.R95H	.	.	.
TMEM86A	144110	broad.mit.edu	36	11	18679964	18679964	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153347	exon3	c.C555A	p.F185L	.	.	.
DNAJC24	120526	broad.mit.edu	36	11	31393003	31393003	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181706	exon3	c.G181A	p.E61K	.	.	.
PAX6	5080	broad.mit.edu	36	11	31771605	31771605	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127612	exon11	c.C989T	p.P330L	.	.	.
RCN1	5954	broad.mit.edu	36	11	32069516	32069516	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002901	exon1	c.G198T	p.K66N	.	.	.
PRR5L	79899	broad.mit.edu	36	11	36429447	36429447	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024841	exon9	c.C698T	p.P233L	.	.	.
OR52B4	143496	broad.mit.edu	36	11	4345834	4345834	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005161	exon1	c.C268T	p.R90C	.	.	.
TRIM68	55128	broad.mit.edu	36	11	4578289	4578289	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018073	exon7	c.G1251A	p.P417P	.	.	.
DGKZ	8525	broad.mit.edu	36	11	46355332	46355332	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003646	exon25	c.C2336T	p.T779M	.	.	.
F2	2147	broad.mit.edu	36	11	46697902	46697902	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000506	exon2	c.C154T	p.R52C	.	.	.
CELF1	10658	broad.mit.edu	36	11	47453534	47453534	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172639	exon13	c.G1197A	p.A399A	.	.	.
KBTBD4	55709	broad.mit.edu	36	11	47555601	47555601	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016506	exon2	c.A527C	p.Q176P	.	.	.
OR51G2	81282	broad.mit.edu	36	11	4892782	4892782	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005238	exon1	c.G688A	p.V230M	.	.	.
OR5D18	219438	broad.mit.edu	36	11	55344340	55344340	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001952	exon1	c.C659T	p.A220V	.	.	.
TRIM6-TRIM34	445372	broad.mit.edu	36	11	5610298	5610298	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130390	exon1	c.G161T	p.S54I	.	.	.
TRIM22	10346	broad.mit.edu	36	11	5675141	5675141	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199573	exon3	c.G511A	p.A171T	.	.	.
APLNR	187	broad.mit.edu	36	11	56760105	56760105	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005161	exon1	c.G950A	p.R317H	.	.	.
TNKS1BP1	85456	broad.mit.edu	36	11	56833491	56833491	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033396	exon6	c.T3270C	p.F1090F	.	.	.
PRG2	5553	broad.mit.edu	36	11	56941860	56941860	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199329	exon8	c.G608A	p.R203H	.	.	.
SLC43A1	8501	broad.mit.edu	36	11	57024895	57024895	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003627	exon5	c.C398T	p.P133L	.	.	.
CLP1	10978	broad.mit.edu	36	11	57185110	57185110	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142597	exon3	c.C712T	p.R238C	.	.	.
DAK	26007	broad.mit.edu	36	11	60862097	60862097	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015533	exon3	c.C112A	p.L38I	.	.	.
OR52W1	120787	broad.mit.edu	36	11	6177426	6177426	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005178	exon1	c.C397T	p.R133C	.	.	.
FLRT1	23769	broad.mit.edu	36	11	63641207	63641207	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013280	exon2	c.C892T	p.R298W	.	.	.
FLRT1	23769	broad.mit.edu	36	11	63642193	63642193	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013280	exon2	c.G1878A	p.P626P	.	.	.
RASGRP2	10235	broad.mit.edu	36	11	64261024	64261024	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098670	exon9	c.G872A	p.R291H	.	.	.
EHD1	10938	broad.mit.edu	36	11	64378598	64378598	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006795	exon5	c.C1388T	p.T463M	.	.	.
PCNXL3	399909	broad.mit.edu	36	11	65152743	65152743	+	Silent	SNP	C	T	T	rs34436297	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032223	exon23	c.C3804T	p.A1268A	.	.	.
SF3B2	10992	broad.mit.edu	36	11	65583089	65583089	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006842	exon10	c.T1179C	p.F393F	.	.	.
SF3B2	10992	broad.mit.edu	36	11	65583998	65583998	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006842	exon13	c.T1571G	p.L524R	.	.	.
RBM4	5936	broad.mit.edu	36	11	66164117	66164117	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198843	exon2	c.G359A	p.R120Q	.	.	.
KDM2A	22992	broad.mit.edu	36	11	66778327	66778327	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012308	exon20	c.C3169T	p.R1057C	.	.	.
LRP5	4041	broad.mit.edu	36	11	67910608	67910608	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002335	exon6	c.G1264A	p.A422T	.	.	.
CPT1A	1374	broad.mit.edu	36	11	68283692	68283692	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031847	exon18	c.G2156A	p.G719D	.	.	.
ZNF215	7762	broad.mit.edu	36	11	6934098	6934098	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013250	exon7	c.T1314C	p.N438N	.	.	.
ZNF214	7761	broad.mit.edu	36	11	6978278	6978278	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013249	exon3	c.T1212C	p.H404H	.	.	.
NADSYN1	55191	broad.mit.edu	36	11	70871635	70871635	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018161	exon14	c.A1243G	p.T415A	.	.	.
KRTAP5-10	387273	broad.mit.edu	36	11	70954866	70954866	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012710	exon1	c.C585T	p.P195P	.	.	.
ARAP1	116985	broad.mit.edu	36	11	72115468	72115468	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040118	exon3	c.G354A	p.P118P	.	.	.
SYT9	143425	broad.mit.edu	36	11	7281062	7281062	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175733	exon2	c.C362A	p.P121H	.	.	.
CHRDL2	25884	broad.mit.edu	36	11	74107482	74107482	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015424	exon2	c.C126T	p.P42P	.	.	.
MAP6	4135	broad.mit.edu	36	11	74976800	74976800	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033063	exon4	c.C1394A	p.S465Y	.	.	.
PPFIBP2	8495	broad.mit.edu	36	11	7543558	7543558	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003621	exon3	c.G263T	p.W88L	.	.	.
MYO7A	4647	broad.mit.edu	36	11	76594214	76594214	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000260	exon40	c.G5540A	p.S1847N	.	.	.
OR10A6	390093	broad.mit.edu	36	11	7905908	7905908	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004461	exon1	c.G878A	p.R293Q	.	.	.
NLRP10	338322	broad.mit.edu	36	11	7938776	7938776	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176821	exon2	c.G959T	p.R320M	.	.	.
DLG2	1740	broad.mit.edu	36	11	83487635	83487635	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142700	exon3	c.C260T	p.A87V	.	.	.
PICALM	8301	broad.mit.edu	36	11	85403584	85403584	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007166	exon5	c.A523G	p.M175V	.	.	.
CTSC	1075	broad.mit.edu	36	11	87707824	87707824	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114173	exon2	c.C247A	p.H83N	.	.	.
GRM5	2915	broad.mit.edu	36	11	87881415	87881415	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000842	exon9	c.C3536T	p.S1179L	.	.	.
SLC36A4	120103	broad.mit.edu	36	11	92527056	92527056	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152313	exon10	c.G1073A	p.G358D	.	.	.
KDM4D	55693	broad.mit.edu	36	11	94371196	94371196	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018039	exon3	c.C1012T	p.R338C	.	.	.
ATM	472	broad.mit.edu	36	11	107680624	107680624	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000051	exon37	c.5509delT	p.F1837fs	.	.	.
MUC2	4583	broad.mit.edu	36	11	1077473	1077473	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002457	exon24	c.3224delG	p.C1075fs	.	.	.
BAD	572	broad.mit.edu	36	11	63795733	63795733	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004322	exon2	c.306delC	p.P102fs	.	.	.
NCOR2	9612	broad.mit.edu	36	12	123453052	123453053	+	In_Frame_Ins	INS	-	TGTTGC	TGTTGC	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001077261	exon16	c.1491_1492insGCAACA	p.Q497delinsQQQ	.	.	.
EPS8	2059	broad.mit.edu	36	12	15727175	15727176	+	Splice_Site	INS	-	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
DRAM1	55332	broad.mit.edu	36	12	100826217	100826217	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018370	exon4	c.G465A	p.S155S	.	.	.
NUP37	79023	broad.mit.edu	36	12	101018940	101018940	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024057	exon3	c.G354T	p.K118N	.	.	.
BTBD11	121551	broad.mit.edu	36	12	106537894	106537894	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017523	exon9	c.C1065T	p.G355G	.	.	.
TAS2R19	259294	broad.mit.edu	36	12	11066364	11066364	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176888	exon1	c.G74A	p.G25D	.	.	.
C12orf51	283450	broad.mit.edu	36	12	111152945	111152945	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001109662	exon39	c.G5749A	p.A1917T	.	.	.
DTX1	1840	broad.mit.edu	36	12	112018910	112018910	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004416	exon9	c.G1646A	p.R549Q	.	.	.
MED13L	23389	broad.mit.edu	36	12	114909298	114909298	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015335	exon18	c.C4113T	p.Y1371Y	.	.	.
RNFT2	84900	broad.mit.edu	36	12	115689038	115689038	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032814	exon6	c.G664A	p.A222T	.	.	.
CIT	11113	broad.mit.edu	36	12	118657434	118657434	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007174	exon24	c.G2944A	p.D982N	.	.	.
GCN1L1	10985	broad.mit.edu	36	12	119063087	119063087	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006836	exon45	c.A5953G	p.I1985V	.	.	.
ANAPC5	51433	broad.mit.edu	36	12	120230733	120230733	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001137559	exon17	c.C1865T	p.A622V	.	.	.
ZCCHC8	55596	broad.mit.edu	36	12	121524504	121524504	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017612	exon14	c.C1617T	p.S539S	.	.	.
ZCCHC8	55596	broad.mit.edu	36	12	121533808	121533808	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017612	exon7	c.A642G	p.E214E	.	.	.
TCTN2	79867	broad.mit.edu	36	12	122755144	122755144	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024809	exon15	c.G1725A	p.A575A	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122932231	122932231	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207437	exon50	c.G8387A	p.R2796H	.	.	.
DDX47	51202	broad.mit.edu	36	12	12868201	12868201	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016355	exon8	c.A881G	p.H294R	.	.	.
GPRC5A	9052	broad.mit.edu	36	12	12952538	12952538	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003979	exon2	c.G88A	p.V30I	.	.	.
HEBP1	50865	broad.mit.edu	36	12	13019537	13019537	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015987	exon4	c.G542A	p.R181H	.	.	.
MMP17	4326	broad.mit.edu	36	12	130889190	130889190	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016155	exon3	c.C373T	p.R125C	.	.	.
ZNF26	7574	broad.mit.edu	36	12	132093792	132093792	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019591	exon2	c.T125C	p.V42A	.	.	.
SLC6A13	6540	broad.mit.edu	36	12	214558	214558	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190997	exon5	c.T514C	p.F172L	.	.	.
RECQL	5965	broad.mit.edu	36	12	21515264	21515264	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032941	exon15	c.C1703T	p.S568L	.	.	.
CACNA1C	775	broad.mit.edu	36	12	2529382	2529382	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001129842	exon10	c.C1403T	p.T468I	.	.	.
FGFR1OP2	26127	broad.mit.edu	36	12	27001892	27001892	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171888	exon4	c.C345T	p.S115S	.	.	.
KLHDC5	57542	broad.mit.edu	36	12	27842299	27842299	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020782	exon3	c.G1451A	p.R484H	.	.	.
FOXM1	2305	broad.mit.edu	36	12	2838821	2838821	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_202003	exon8	c.A1491G	p.R497R	.	.	.
BICD1	636	broad.mit.edu	36	12	32372469	32372469	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001003398	exon5	c.A1813G	p.T605A	.	.	.
SLC2A13	114134	broad.mit.edu	36	12	38708448	38708448	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052885	exon3	c.C847T	p.R283C	.	.	.
LRRK2	120892	broad.mit.edu	36	12	38975618	38975618	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198578	exon23	c.A3001G	p.S1001G	.	.	.
CNTN1	1272	broad.mit.edu	36	12	39673332	39673332	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175038	exon16	c.G2074T	p.G692C	.	.	.
ADAMTS20	80070	broad.mit.edu	36	12	42109707	42109707	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025003	exon24	c.C3469T	p.R1157X	.	.	.
DYRK4	8798	broad.mit.edu	36	12	4572530	4572530	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003845	exon4	c.G220A	p.D74N	.	.	.
RPAP3	79657	broad.mit.edu	36	12	46350255	46350255	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146076	exon12	c.T951C	p.S317S	.	.	.
VDR	7421	broad.mit.edu	36	12	46526717	46526717	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000376	exon8	c.C897T	p.D299D	.	.	.
RND1	27289	broad.mit.edu	36	12	47538144	47538144	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014470	exon5	c.C601T	p.R201X	.	.	.
MLL2	8085	broad.mit.edu	36	12	47711044	47711044	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003482	exon40	c.C13570T	p.R4524W	.	.	.
LIMA1	51474	broad.mit.edu	36	12	48902160	48902160	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001113546	exon4	c.A541G	p.T181A	.	.	.
KRT78	196374	broad.mit.edu	36	12	51524673	51524673	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173352	exon5	c.C858T	p.R286R	.	.	.
AMHR2	269	broad.mit.edu	36	12	52105265	52105265	+	Silent	SNP	C	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164691	exon4	c.C474G	p.L158L	.	.	.
NFE2	4778	broad.mit.edu	36	12	52973230	52973230	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136023	exon3	c.T317G	p.V106G	.	.	.
MYL6B	140465	broad.mit.edu	36	12	54835479	54835479	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199629	exon5	c.C356T	p.S119L	.	.	.
GPR182	11318	broad.mit.edu	36	12	55676243	55676243	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007264	exon2	c.G983A	p.R328Q	.	.	.
MYO1A	4640	broad.mit.edu	36	12	55716392	55716392	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005379	exon22	c.C2315T	p.A772V	.	.	.
LRP1	4035	broad.mit.edu	36	12	55836837	55836837	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002332	exon10	c.T1428C	p.H476H	.	.	.
GLI1	2735	broad.mit.edu	36	12	56150836	56150836	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001160045	exon10	c.C1662A	p.T554T	.	.	.
TSFM	10102	broad.mit.edu	36	12	56467091	56467091	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172695	exon4	c.T362C	p.V121A	.	.	.
VWF	7450	broad.mit.edu	36	12	5998378	5998378	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000552	exon28	c.G4467A	p.G1489G	.	.	.
VWF	7450	broad.mit.edu	36	12	6054962	6054962	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000552	exon7	c.G674A	p.C225Y	.	.	.
PPM1H	57460	broad.mit.edu	36	12	61347228	61347228	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020700	exon9	c.A1394G	p.H465R	.	.	.
DPY19L2	283417	broad.mit.edu	36	12	62240636	62240636	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173812	exon22	c.G2200A	p.V734I	.	.	.
NOP2	4839	broad.mit.edu	36	12	6541131	6541131	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006170	exon11	c.G1155T	p.L385L	.	.	.
CHD4	1108	broad.mit.edu	36	12	6580048	6580048	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001273	exon8	c.A976G	p.I326V	.	.	.
LRRC10	376132	broad.mit.edu	36	12	68290144	68290144	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201550	exon1	c.G742A	p.D248N	.	.	.
CDCA3	83461	broad.mit.edu	36	12	6829280	6829280	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031299	exon4	c.C254A	p.P85H	.	.	.
PTPN6	5777	broad.mit.edu	36	12	6939846	6939846	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002831	exon14	c.C1660T	p.R554C	.	.	.
CD163L1	283316	broad.mit.edu	36	12	7447567	7447567	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174941	exon6	c.G1239A	p.P413P	.	.	.
PPP1R12A	4659	broad.mit.edu	36	12	78726435	78726435	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143886	exon11	c.A1248G	p.R416R	.	.	.
ATP2B1	490	broad.mit.edu	36	12	88522161	88522161	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001323	exon15	c.C2536T	p.R846X	.	.	.
ATP2B1	490	broad.mit.edu	36	12	88573656	88573656	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001323	exon1	c.C139T	p.R47X	.	.	.
A2M	2	broad.mit.edu	36	12	9156061	9156061	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000014	exon4	c.T444C	p.V148V	.	.	.
USP44	84101	broad.mit.edu	36	12	94451179	94451179	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042403	exon2	c.A985G	p.T329A	.	.	.
HAL	3034	broad.mit.edu	36	12	94910692	94910692	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002108	exon9	c.T612C	p.P204P	.	.	.
DDX54	79039	broad.mit.edu	36	12	112085210	112085210	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024072	exon17	c.2105delG	p.G702fs	.	.	.
ARHGEF7	8874	broad.mit.edu	36	13	110694292	110694292	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001113512	exon6	c.C745T	p.R249W	.	.	.
ARHGEF7	8874	broad.mit.edu	36	13	110742541	110742541	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001113512	exon18	c.G2123A	p.R708H	.	.	.
F7	2155	broad.mit.edu	36	13	112813034	112813034	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000131	exon3	c.G160A	p.V54I	.	.	.
GRK1	6011	broad.mit.edu	36	13	113373880	113373880	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002929	exon3	c.C893T	p.T298M	.	.	.
RASA3	22821	broad.mit.edu	36	13	113792975	113792975	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007368	exon17	c.C1658T	p.A553V	.	.	.
ZNF828	283489	broad.mit.edu	36	13	114109834	114109834	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164145	exon3	c.G2415A	p.P805P	.	.	.
SKA3	221150	broad.mit.edu	36	13	20640187	20640187	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166017	exon4	c.A683T	p.Y228F	.	.	.
SACS	26278	broad.mit.edu	36	13	22827925	22827925	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014363	exon8	c.C826T	p.R276C	.	.	.
SPATA13	221178	broad.mit.edu	36	13	23774751	23774751	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166271	exon13	c.C3674A	p.P1225H	.	.	.
RNF17	56163	broad.mit.edu	36	13	24314286	24314286	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184993	exon19	c.T2590A	p.S864T	.	.	.
MTMR6	9107	broad.mit.edu	36	13	24725992	24725992	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004685	exon11	c.A1256G	p.E419G	.	.	.
LNX2	222484	broad.mit.edu	36	13	27034818	27034818	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153371	exon5	c.G956A	p.R319H	.	.	.
FLT1	2321	broad.mit.edu	36	13	27783759	27783759	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002019	exon27	c.G3603A	p.P1201P	.	.	.
BRCA2	675	broad.mit.edu	36	13	31804626	31804626	+	Silent	SNP	C	T	T	rs41293473	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000059	exon10	c.C1011T	p.N337N	.	.	.
PDS5B	23047	broad.mit.edu	36	13	32207356	32207356	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015032	exon21	c.A2295G	p.T765T	.	.	.
FOXO1	2308	broad.mit.edu	36	13	40031681	40031681	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002015	exon2	c.A1947G	p.T649T	.	.	.
RB1	5925	broad.mit.edu	36	13	47935868	47935868	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000321	exon21	c.A2107T	p.I703F	.	.	.
FNDC3A	22862	broad.mit.edu	36	13	48663245	48663245	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079673	exon18	c.C2038T	p.Q680X	.	.	.
THSD1	55901	broad.mit.edu	36	13	51850073	51850073	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018676	exon5	c.C2033T	p.A678V	.	.	.
KLHL1	57626	broad.mit.edu	36	13	69579410	69579410	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020866	exon1	c.423delA	p.K141fs	.	.	.
DYNC1H1	1778	broad.mit.edu	36	14	101543155	101543155	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001376	exon28	c.G5774A	p.R1925Q	.	.	.
DYNC1H1	1778	broad.mit.edu	36	14	101585570	101585570	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001376	exon75	c.C13413T	p.A4471A	.	.	.
DYNC1H1	1778	broad.mit.edu	36	14	101585938	101585938	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001376	exon76	c.C13650T	p.G4550G	.	.	.
NDRG2	57447	broad.mit.edu	36	14	20561303	20561303	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016250	exon3	c.G12A	p.L4L	.	.	.
MDGA2	161357	broad.mit.edu	36	14	46574221	46574221	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182830	exon8	c.C668A	p.P223Q	.	.	.
NIN	51199	broad.mit.edu	36	14	50306882	50306882	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182944	exon12	c.C1408T	p.R470W	.	.	.
ARID4A	5926	broad.mit.edu	36	14	57897429	57897429	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023000	exon19	c.C1996T	p.R666W	.	.	.
SIX6	4990	broad.mit.edu	36	14	60045987	60045987	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007374	exon1	c.G118A	p.A40T	.	.	.
KCNH5	27133	broad.mit.edu	36	14	62316334	62316334	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172376	exon10	c.G1710A	p.A570A	.	.	.
MTHFD1	4522	broad.mit.edu	36	14	63985949	63985949	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005956	exon24	c.C2313T	p.S771S	.	.	.
EXD2	55218	broad.mit.edu	36	14	68777516	68777516	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001193363	exon9	c.C1812T	p.N604N	.	.	.
ADAM20	8748	broad.mit.edu	36	14	70060586	70060586	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003814	exon2	c.C792T	p.V264V	.	.	.
MAP3K9	4293	broad.mit.edu	36	14	70278969	70278969	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033141	exon6	c.C1419T	p.A473A	.	.	.
ACOT2	10965	broad.mit.edu	36	14	73105891	73105891	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006821	exon1	c.C194T	p.A65V	.	.	.
VRTN	55237	broad.mit.edu	36	14	73893468	73893468	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018228	exon2	c.C229T	p.L77L	.	.	.
PTPN21	11099	broad.mit.edu	36	14	88016082	88016082	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007039	exon13	c.C1446A	p.A482A	.	.	.
TTC8	123016	broad.mit.edu	36	14	88407750	88407750	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198309	exon11	c.G1124A	p.R375H	.	.	.
CCDC88C	440193	broad.mit.edu	36	14	90944841	90944841	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080414	exon3	c.G185A	p.R62H	.	.	.
CATSPERB	79820	broad.mit.edu	36	14	91229529	91229529	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024764	exon8	c.A664G	p.T222A	.	.	.
BTBD7	55727	broad.mit.edu	36	14	92787644	92787644	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002860	exon8	c.A1860G	p.P620P	.	.	.
KIAA1409	57578	broad.mit.edu	36	14	93222698	93222698	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020818	exon44	c.A6433T	p.R2145W	.	.	.
FAM181A	90050	broad.mit.edu	36	14	93464478	93464478	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138344	exon3	c.C280T	p.R94C	.	.	.
DDX24	57062	broad.mit.edu	36	14	93596198	93596198	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020414	exon5	c.G1912C	p.D638H	.	.	.
ZNF219	51222	broad.mit.edu	36	14	20630593	20630598	+	In_Frame_Del	DEL	GAGGCT	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	GAGGCT	GAGGCT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001102454	exon3	c.698_703del	p.233_235del	.	.	.
EML5	161436	broad.mit.edu	36	14	88158805	88158807	+	In_Frame_Del	DEL	CTT	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	CTT	CTT	CTT	-	CTT	CTT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183387	exon36	c.4907_4909del	p.1636_1637del	.	.	.
ATG2B	55102	broad.mit.edu	36	14	95840631	95840631	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018036	exon32	c.4796delG	p.G1599fs	.	.	.
SPRED1	161742	broad.mit.edu	36	15	36378994	36378994	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152594	exon2	c.G161A	p.G54D	.	.	.
FAM98B	283742	broad.mit.edu	36	15	36564125	36564125	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173611	exon8	c.T1275A	p.G425G	.	.	.
NDUFAF1	51103	broad.mit.edu	36	15	39474399	39474399	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016013	exon3	c.T709C	p.Y237H	.	.	.
LTK	4058	broad.mit.edu	36	15	39584896	39584896	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002344	exon14	c.C1822T	p.H608Y	.	.	.
MGA	23269	broad.mit.edu	36	15	39816153	39816153	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164273	exon13	c.C4399T	p.R1467C	.	.	.
PLA2G4D	283748	broad.mit.edu	36	15	40150622	40150622	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178034	exon17	c.A1867G	p.T623A	.	.	.
PLA2G4F	255189	broad.mit.edu	36	15	40221574	40221574	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_213600	exon20	c.C2450T	p.A817V	.	.	.
VPS39	23339	broad.mit.edu	36	15	40246305	40246305	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015289	exon14	c.T1476C	p.S492S	.	.	.
SEMA6D	80031	broad.mit.edu	36	15	45843692	45843692	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153619	exon11	c.G995A	p.S332N	.	.	.
HDC	3067	broad.mit.edu	36	15	48322446	48322446	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002112	exon12	c.G1292A	p.G431D	.	.	.
ZNF280D	54816	broad.mit.edu	36	15	54758171	54758171	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017661	exon11	c.C1145T	p.T382M	.	.	.
LIPC	3990	broad.mit.edu	36	15	56625338	56625338	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000236	exon5	c.A680G	p.H227R	.	.	.
BNIP2	663	broad.mit.edu	36	15	57757575	57757575	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004330	exon5	c.A662G	p.D221G	.	.	.
USP3	9960	broad.mit.edu	36	15	61649704	61649704	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006537	exon9	c.G781A	p.A261T	.	.	.
ZNF609	23060	broad.mit.edu	36	15	62760585	62760585	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015042	exon8	c.C4187T	p.A1396V	.	.	.
PARP16	54956	broad.mit.edu	36	15	63350326	63350326	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017851	exon2	c.G312T	p.E104D	.	.	.
RAB11A	8766	broad.mit.edu	36	15	63957227	63957227	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004663	exon3	c.C310A	p.R104R	.	.	.
IQCH	64799	broad.mit.edu	36	15	65464356	65464356	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031715	exon11	c.T1401C	p.I467I	.	.	.
MYO9A	4649	broad.mit.edu	36	15	69939163	69939163	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006901	exon34	c.C6120T	p.C2040C	.	.	.
NEO1	4756	broad.mit.edu	36	15	71351925	71351925	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172623	exon19	c.G2934T	p.Q978H	.	.	.
ISLR	3671	broad.mit.edu	36	15	72254672	72254672	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201526	exon2	c.C420T	p.D140D	.	.	.
CYP1A1	1543	broad.mit.edu	36	15	72800629	72800629	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000499	exon5	c.G1130A	p.R377Q	.	.	.
DNAJA4	55466	broad.mit.edu	36	15	76353785	76353785	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130183	exon4	c.C529T	p.R177C	.	.	.
CHRNA3	1136	broad.mit.edu	36	15	76681066	76681066	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000743	exon5	c.G973A	p.V325M	.	.	.
RASGRF1	5923	broad.mit.edu	36	15	77126380	77126380	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002891	exon5	c.G641A	p.R214Q	.	.	.
RASGRF1	5923	broad.mit.edu	36	15	77137856	77137856	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002891	exon3	c.C406T	p.H136Y	.	.	.
ARNT2	9915	broad.mit.edu	36	15	78642530	78642530	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014862	exon12	c.G1211A	p.R404H	.	.	.
LINS	55180	broad.mit.edu	36	15	98931788	98931788	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040616	exon5	c.T813G	p.T271T	.	.	.
MAPKBP1	23005	broad.mit.edu	36	15	39901842	39901842	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014994	exon26	c.3159delC	p.S1053fs	.	.	.
CATSPER2	117155	broad.mit.edu	36	15	41711762	41711765	+	Frame_Shift_Del	DEL	GAGT	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	GAGT	GAGT	GAGT	-	GAGT	GAGT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_054020	exon12	c.1479_1482del	p.493_494del	.	.	.
IL16	3603	broad.mit.edu	36	15	79379217	79379219	+	In_Frame_Del	DEL	CCT	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	CCT	CCT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001172128	exon14	c.2495_2497del	p.832_833del	.	.	.
IFT140	9742	broad.mit.edu	36	16	1554096	1554096	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014714	exon17	c.A1970G	p.E657G	.	.	.
MYH11	4629	broad.mit.edu	36	16	15716320	15716320	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040114	exon41	c.G5754A	p.T1918T	.	.	.
ABCC6	368	broad.mit.edu	36	16	16190194	16190194	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171	exon13	c.G1774A	p.V592I	.	.	.
XYLT1	64131	broad.mit.edu	36	16	17142600	17142600	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022166	exon7	c.C1498T	p.R500W	.	.	.
C16orf62	57020	broad.mit.edu	36	16	19558883	19558883	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020314	exon21	c.C2011T	p.R671W	.	.	.
ACSM2A	123876	broad.mit.edu	36	16	20399650	20399650	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010845	exon13	c.G1415A	p.R472Q	.	.	.
ERI2	112479	broad.mit.edu	36	16	20719183	20719183	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080663	exon6	c.A503G	p.K168R	.	.	.
OTOA	146183	broad.mit.edu	36	16	21633918	21633918	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144672	exon13	c.G1432A	p.V478I	.	.	.
SCNN1G	6340	broad.mit.edu	36	16	23131551	23131551	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039	exon9	c.G1346T	p.C449F	.	.	.
COG7	91949	broad.mit.edu	36	16	23316903	23316903	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153603	exon14	c.G1852A	p.A618T	.	.	.
ERN2	10595	broad.mit.edu	36	16	23629780	23629780	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033266	exon2	c.G298A	p.A100T	.	.	.
TNRC6A	27327	broad.mit.edu	36	16	24669602	24669602	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014494	exon3	c.C108T	p.D36D	.	.	.
ARHGDIG	398	broad.mit.edu	36	16	272744	272744	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001176	exon6	c.A607G	p.T203A	.	.	.
GTF3C1	2975	broad.mit.edu	36	16	27383332	27383332	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001520	exon34	c.C5682A	p.A1894A	.	.	.
XPO6	23214	broad.mit.edu	36	16	28096137	28096137	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015171	exon3	c.T112G	p.F38V	.	.	.
CD2BP2	10421	broad.mit.edu	36	16	30271826	30271826	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006110	exon7	c.A1007C	p.D336A	.	.	.
DCTPP1	79077	broad.mit.edu	36	16	30348758	30348758	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024096	exon1	c.G45T	p.E15D	.	.	.
ZNF629	23361	broad.mit.edu	36	16	30700809	30700809	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080417	exon3	c.G2341A	p.V781M	.	.	.
ZNF646	9726	broad.mit.edu	36	16	30996575	30996575	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014699	exon2	c.C1429T	p.R477W	.	.	.
ZNF75A	7627	broad.mit.edu	36	16	3307336	3307336	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153028	exon6	c.G357A	p.M119I	.	.	.
SLX4	84464	broad.mit.edu	36	16	3581123	3581123	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032444	exon12	c.C2517T	p.H839H	.	.	.
CREBBP	1387	broad.mit.edu	36	16	3763908	3763908	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004380	exon13	c.C2308T	p.P770S	.	.	.
LONP2	83752	broad.mit.edu	36	16	46939640	46939640	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031490	exon14	c.C2275T	p.R759W	.	.	.
SALL1	6299	broad.mit.edu	36	16	49728698	49728698	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002968	exon3	c.C3801T	p.L1267L	.	.	.
RBL2	5934	broad.mit.edu	36	16	52058564	52058564	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005611	exon14	c.A1957G	p.T653A	.	.	.
IRX3	79191	broad.mit.edu	36	16	52876850	52876850	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024336	exon2	c.G444A	p.E148E	.	.	.
MMP2	4313	broad.mit.edu	36	16	54080051	54080051	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004530	exon6	c.C928T	p.R310C	.	.	.
CDH11	1009	broad.mit.edu	36	16	63589992	63589992	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001797	exon4	c.C497T	p.A166V	.	.	.
CMTM1	113540	broad.mit.edu	36	16	65158164	65158164	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052999	exon1	c.A247T	p.T83S	.	.	.
RRAD	6236	broad.mit.edu	36	16	65513624	65513624	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004165	exon5	c.C783T	p.N261N	.	.	.
CES3	23491	broad.mit.edu	36	16	65562618	65562618	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001185177	exon10	c.C1186A	p.L396I	.	.	.
SLC12A4	6560	broad.mit.edu	36	16	66537390	66537390	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145964	exon20	c.C2611T	p.L871L	.	.	.
PLA2G15	23659	broad.mit.edu	36	16	66840783	66840783	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012320	exon2	c.T217C	p.F73L	.	.	.
SLC7A6	9057	broad.mit.edu	36	16	66866352	66866352	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003983	exon3	c.T222A	p.T74T	.	.	.
CLEC18C	283971	broad.mit.edu	36	16	68777345	68777345	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173619	exon11	c.G1268A	p.R423H	.	.	.
FUK	197258	broad.mit.edu	36	16	69066338	69066338	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145059	exon18	c.G2300A	p.R767Q	.	.	.
SF3B3	23450	broad.mit.edu	36	16	69162603	69162603	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012426	exon25	c.G3513T	p.K1171N	.	.	.
DHODH	1723	broad.mit.edu	36	16	70603478	70603478	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001361	exon2	c.T50C	p.L17P	.	.	.
FA2H	79152	broad.mit.edu	36	16	73307861	73307861	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024306	exon6	c.C924T	p.Y308Y	.	.	.
KCNG4	93107	broad.mit.edu	36	16	82828106	82828106	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172347	exon2	c.C487T	p.R163W	.	.	.
ZDHHC7	55625	broad.mit.edu	36	16	83570372	83570372	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017740	exon5	c.G461A	p.R154Q	.	.	.
MVD	4597	broad.mit.edu	36	16	87249213	87249213	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002461	exon7	c.C792T	p.H264H	.	.	.
SPG7	6687	broad.mit.edu	36	16	88126491	88126491	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003119	exon9	c.T1270A	p.F424I	.	.	.
GGA2	23062	broad.mit.edu	36	16	23386456	23386458	+	In_Frame_Del	DEL	CTC	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	CTC	CTC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015044	exon17	c.1796_1798del	p.599_600del	.	.	.
INO80E	283899	broad.mit.edu	36	16	29924154	29924154	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173618	exon7	c.625delC	p.P209fs	.	.	.
ABCC6P2	730013	broad.mit.edu	36	16	14824199	14824199	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
SLFN12L	342615	broad.mit.edu	36	17	30830732	30830733	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195790	exon2	c.610_611insT	p.N204_R205delinsX	.	.	.
MYH13	8735	broad.mit.edu	36	17	10171981	10171981	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003802	exon22	c.G2618A	p.R873H	.	.	.
DNAH9	1770	broad.mit.edu	36	17	11591724	11591724	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001372	exon32	c.G6526A	p.V2176I	.	.	.
ARHGAP44	9912	broad.mit.edu	36	17	12788221	12788221	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014859	exon10	c.T844C	p.C282R	.	.	.
PMP22	5376	broad.mit.edu	36	17	15075081	15075081	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153322	exon4	c.C361T	p.H121Y	.	.	.
MPRIP	23164	broad.mit.edu	36	17	16970745	16970745	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015134	exon4	c.C272T	p.T91M	.	.	.
LRRC48	83450	broad.mit.edu	36	17	17848438	17848438	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031294	exon10	c.A1036G	p.N346D	.	.	.
ALDH3A1	218	broad.mit.edu	36	17	19585113	19585113	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135168	exon5	c.G692A	p.R231H	.	.	.
TLCD1	116238	broad.mit.edu	36	17	24076484	24076484	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001160407	exon3	c.C184G	p.R62G	.	.	.
MYO1D	4642	broad.mit.edu	36	17	28122320	28122320	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015194	exon6	c.G650A	p.R217H	.	.	.
CCT6B	10693	broad.mit.edu	36	17	30290452	30290452	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193529	exon9	c.A965G	p.K322R	.	.	.
FNDC8	54752	broad.mit.edu	36	17	30480556	30480556	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017559	exon3	c.T588A	p.I196I	.	.	.
CCL15	6359	broad.mit.edu	36	17	31349452	31349452	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032965	exon3	c.C225T	p.S75S	.	.	.
KRTAP4-12	83755	broad.mit.edu	36	17	36533640	36533640	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031854	exon1	c.A261G	p.R87R	.	.	.
KRT31	3881	broad.mit.edu	36	17	36805090	36805090	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002277	exon5	c.C809T	p.A270V	.	.	.
KRT17	3872	broad.mit.edu	36	17	37031436	37031436	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000422	exon4	c.C769T	p.R257C	.	.	.
DHX58	79132	broad.mit.edu	36	17	37511375	37511375	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024119	exon9	c.T1156C	p.W386R	.	.	.
PTRF	284119	broad.mit.edu	36	17	37810267	37810267	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012232	exon2	c.G1137A	p.S379S	.	.	.
ATP2A3	489	broad.mit.edu	36	17	3786500	3786500	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174955	exon16	c.G2334T	p.T778T	.	.	.
ATP2A3	489	broad.mit.edu	36	17	3791173	3791173	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174955	exon14	c.C1941T	p.D647D	.	.	.
G6PC3	92579	broad.mit.edu	36	17	39507866	39507866	+	De_novo_Start_OutOfFrame	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138387	exon4	c.C420A	p.R140R	.	.	.
HDAC5	10014	broad.mit.edu	36	17	39518021	39518021	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001015053	exon15	c.G2082A	p.K694K	.	.	.
UBTF	7343	broad.mit.edu	36	17	39649580	39649580	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001076683	exon3	c.A77G	p.D26G	.	.	.
GPATCH8	23131	broad.mit.edu	36	17	39832072	39832072	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002909	exon8	c.C2899T	p.R967C	.	.	.
FZD2	2535	broad.mit.edu	36	17	39992115	39992115	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001466	exon1	c.G1533A	p.T511T	.	.	.
ANKFY1	51479	broad.mit.edu	36	17	4058052	4058052	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020740	exon6	c.G657A	p.E219E	.	.	.
MAP3K14	9020	broad.mit.edu	36	17	40703614	40703614	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003954	exon11	c.C1920T	p.T640T	.	.	.
CDC27	996	broad.mit.edu	36	17	42604351	42604351	+	Nonsense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001114091	exon3	c.T182A	p.L61X	.	.	.
SCRN2	90507	broad.mit.edu	36	17	43270244	43270244	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138355	exon8	c.G1243A	p.A415T	.	.	.
NFE2L1	4779	broad.mit.edu	36	17	43491394	43491394	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003204	exon6	c.G1711A	p.V571M	.	.	.
COL1A1	1277	broad.mit.edu	36	17	45631944	45631944	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000088	exon3	c.C305A	p.P102H	.	.	.
ABCC3	8714	broad.mit.edu	36	17	46089177	46089177	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144070	exon3	c.G338T	p.G113V	.	.	.
ANKRD40	91369	broad.mit.edu	36	17	46132240	46132240	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052855	exon3	c.T297A	p.D99E	.	.	.
DHX33	56919	broad.mit.edu	36	17	5305091	5305091	+	Silent	SNP	G	A	A	rs34666901	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020162	exon4	c.C741T	p.P247P	.	.	.
HSF5	124535	broad.mit.edu	36	17	53895536	53895536	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080439	exon4	c.A1148G	p.H383R	.	.	.
RGS9	8787	broad.mit.edu	36	17	60651820	60651820	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003835	exon18	c.G1646A	p.R549H	.	.	.
WIPI1	55062	broad.mit.edu	36	17	63958573	63958573	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017983	exon3	c.T224A	p.V75D	.	.	.
MAP2K6	5608	broad.mit.edu	36	17	65034389	65034389	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002758	exon10	c.G825A	p.S275S	.	.	.
TTYH2	94015	broad.mit.edu	36	17	69756793	69756793	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032646	exon7	c.A853T	p.T285S	.	.	.
TMEM104	54868	broad.mit.edu	36	17	70343958	70343958	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017728	exon10	c.C1028T	p.A343V	.	.	.
C17orf28	283987	broad.mit.edu	36	17	70472182	70472182	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030630	exon2	c.G207T	p.L69L	.	.	.
DVL2	1856	broad.mit.edu	36	17	7070525	7070525	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004422	exon14	c.C1701A	p.P567P	.	.	.
PHF23	79142	broad.mit.edu	36	17	7080006	7080006	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024297	exon4	c.C964T	p.R322W	.	.	.
RECQL5	9400	broad.mit.edu	36	17	71136432	71136432	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004259	exon17	c.G2495A	p.C832Y	.	.	.
PRPSAP1	5635	broad.mit.edu	36	17	71821513	71821513	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002766	exon8	c.G836A	p.R279H	.	.	.
KCTD11	147040	broad.mit.edu	36	17	7197198	7197198	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002914	exon1	c.C213T	p.D71D	.	.	.
TMEM95	339168	broad.mit.edu	36	17	7200522	7200522	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198154	exon6	c.A521T	p.E174V	.	.	.
ZBTB4	57659	broad.mit.edu	36	17	7306114	7306114	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020899	exon4	c.G2911A	p.A971T	.	.	.
POLR2A	5430	broad.mit.edu	36	17	7341855	7341855	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000937	exon7	c.C1144T	p.R382C	.	.	.
C1QTNF1	114897	broad.mit.edu	36	17	74555491	74555491	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198593	exon4	c.G572A	p.G191D	.	.	.
CBX8	57332	broad.mit.edu	36	17	75384479	75384479	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020649	exon4	c.G218T	p.G73V	.	.	.
CCDC40	55036	broad.mit.edu	36	17	75670056	75670056	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017950	exon11	c.C1679T	p.T560M	.	.	.
RNF213	57674	broad.mit.edu	36	17	75981862	75981862	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020914	exon69	c.C15740T	p.A5247V	.	.	.
AZI1	22994	broad.mit.edu	36	17	76779604	76779604	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009811	exon21	c.A2641C	p.K881Q	.	.	.
ALOXE3	59344	broad.mit.edu	36	17	7960915	7960915	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001165960	exon3	c.C652T	p.R218C	.	.	.
MYH10	4628	broad.mit.edu	36	17	8331541	8331541	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005964	exon34	c.G4888A	p.E1630K	.	.	.
ABR	29	broad.mit.edu	36	17	950681	950681	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021962	exon3	c.G291A	p.S97S	.	.	.
TMEM132E	124842	broad.mit.edu	36	17	29978029	29978029	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_207313	exon3	c.568delC	p.P190fs	.	.	.
ARHGAP27	201176	broad.mit.edu	36	17	40838139	40838139	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199282	exon3	c.159delC	p.P53fs	.	.	.
EME1	146956	broad.mit.edu	36	17	45812733	45812733	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166131	exon8	c.1447delA	p.K483fs	.	.	.
C17orf95	124512	broad.mit.edu	36	17	72237439	72237441	+	In_Frame_Del	DEL	AGA	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	AGA	AGA	AGA	-	AGA	AGA	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080510	exon2	c.52_54del	p.18_18del	.	.	.
TP53	7157	broad.mit.edu	36	17	7519123	7519123	+	Frame_Shift_Del	DEL	G	-	-	rs68130327	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001126114	exon5	c.532delC	p.H178fs	 TP53,central_nervous_system,brain,Substitution - Missense,+2 	.	.
KDM6B	23135	broad.mit.edu	36	17	7693626	7693626	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080424	exon11	c.3295delC	p.P1099fs	.	.	.
SPIRE1	56907	broad.mit.edu	36	18	12442385	12442385	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020148	exon15	c.G1839A	p.R613R	.	.	.
ANKRD29	147463	broad.mit.edu	36	18	19468086	19468086	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173505	exon5	c.C356T	p.A119V	.	.	.
LAMA3	3909	broad.mit.edu	36	18	19584990	19584990	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198129	exon5	c.C795T	p.T265T	.	.	.
SMCHD1	23347	broad.mit.edu	36	18	2740476	2740476	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015295	exon32	c.C4136T	p.A1379V	.	.	.
TRAPPC8	22878	broad.mit.edu	36	18	27701377	27701377	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014939	exon17	c.G2449A	p.E817K	.	.	.
SETBP1	26040	broad.mit.edu	36	18	40535762	40535762	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015559	exon2	c.G453A	p.T151T	.	.	.
KIAA0427	9811	broad.mit.edu	36	18	44639766	44639766	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142397	exon13	c.G1641T	p.E547D	.	.	.
SMAD4	4089	broad.mit.edu	36	18	46829211	46829211	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005359	exon3	c.T407C	p.V136A	.	.	.
SMAD4	4089	broad.mit.edu	36	18	46845917	46845917	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005359	exon9	c.G1082A	p.R361H	 SMAD4,small_intestine,duodenum,Substitution - Missense,+1 	.	.
MBD2	8932	broad.mit.edu	36	18	49940174	49940174	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003927	exon6	c.A1207G	p.I403V	.	.	.
KIAA1468	57614	broad.mit.edu	36	18	58039701	58039701	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020854	exon5	c.C849T	p.N283N	.	.	.
ZCCHC2	54877	broad.mit.edu	36	18	58393686	58393686	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017742	exon13	c.T3392C	p.V1131A	.	.	.
TYMS	7298	broad.mit.edu	36	18	660822	660822	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001071	exon5	c.C687G	p.S229R	.	.	.
RBFA	79863	broad.mit.edu	36	18	75907116	75907116	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024805	exon7	c.C1005T	p.G335G	.	.	.
PARD6G	84552	broad.mit.edu	36	18	76019221	76019221	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032510	exon3	c.C555T	p.H185H	.	.	.
ZNF516	9658	broad.mit.edu	36	18	72283494	72283494	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014643	exon3	c.505delG	p.E169fs	.	.	.
OR7G2	390882	broad.mit.edu	36	19	9074598	9074599	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005193	exon1	c.385_386insT	p.A129fs	.	.	.
KRI1	65095	broad.mit.edu	36	19	10531300	10531300	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023008	exon11	c.C1030T	p.R344X	.	.	.
SLC44A2	57153	broad.mit.edu	36	19	10606531	10606531	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020428	exon11	c.A923G	p.Y308C	.	.	.
DHPS	1725	broad.mit.edu	36	19	12647945	12647945	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001930	exon8	c.C900T	p.A300A	.	.	.
GCDH	2639	broad.mit.edu	36	19	12869220	12869220	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013976	exon10	c.G1060T	p.G354C	.	.	.
CC2D1A	54862	broad.mit.edu	36	19	13895583	13895583	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017721	exon17	c.G1899A	p.T633T	.	.	.
CD97	976	broad.mit.edu	36	19	14378194	14378194	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001025160	exon14	c.G1726A	p.A576T	.	.	.
PKN1	5585	broad.mit.edu	36	19	14443527	14443527	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_213560	exon22	c.C2778T	p.D926D	.	.	.
TECR	9524	broad.mit.edu	36	19	14535714	14535714	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138501	exon5	c.C266T	p.T89M	.	.	.
SLC1A6	6511	broad.mit.edu	36	19	14922177	14922177	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005071	exon9	c.G1525A	p.V509I	.	.	.
AKAP8	10270	broad.mit.edu	36	19	15344146	15344146	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005858	exon6	c.G874T	p.G292W	.	.	.
PGLYRP2	114770	broad.mit.edu	36	19	15447720	15447720	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052890	exon2	c.C761T	p.A254V	.	.	.
TMEM38A	79041	broad.mit.edu	36	19	16651828	16651828	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024074	exon2	c.C158T	p.A53V	.	.	.
NWD1	284434	broad.mit.edu	36	19	16769590	16769590	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007525	exon16	c.C3352T	p.R1118C	.	.	.
ANO8	57719	broad.mit.edu	36	19	17296982	17296982	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020959	exon17	c.G2875A	p.G959R	.	.	.
GTPBP3	84705	broad.mit.edu	36	19	17310382	17310382	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032620	exon4	c.C423T	p.G141G	.	.	.
UNC13A	23025	broad.mit.edu	36	19	17620324	17620324	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080421	exon15	c.G1732A	p.A578T	.	.	.
UNC13A	23025	broad.mit.edu	36	19	17638480	17638480	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080421	exon7	c.C502T	p.P168S	.	.	.
FCHO1	23149	broad.mit.edu	36	19	17756622	17756622	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161359	exon24	c.A2165G	p.Y722C	.	.	.
ELL	8178	broad.mit.edu	36	19	18416592	18416592	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006532	exon12	c.C1836T	p.Y612Y	.	.	.
COMP	1311	broad.mit.edu	36	19	18758444	18758444	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000095	exon11	c.C1152T	p.A384A	.	.	.
SUGP2	10147	broad.mit.edu	36	19	18997831	18997831	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014884	exon3	c.G326A	p.R109Q	.	.	.
HAPLN4	404037	broad.mit.edu	36	19	19230470	19230470	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_023002	exon4	c.C679T	p.R227W	.	.	.
MAU2	23383	broad.mit.edu	36	19	19310695	19310695	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015329	exon5	c.C498T	p.D166D	.	.	.
AP3D1	8943	broad.mit.edu	36	19	2061135	2061135	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003938	exon26	c.G3078T	p.K1026N	.	.	.
ZNF681	148213	broad.mit.edu	36	19	23719675	23719675	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138286	exon4	c.A517G	p.K173E	.	.	.
THEG	51298	broad.mit.edu	36	19	322215	322215	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199202	exon5	c.C671T	p.P224L	.	.	.
C19orf28	126321	broad.mit.edu	36	19	3493808	3493808	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021731	exon10	c.T1588C	p.W530R	.	.	.
C19orf29	58509	broad.mit.edu	36	19	3563021	3563021	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021231	exon10	c.G2177A	p.R726H	.	.	.
CCDC123	84902	broad.mit.edu	36	19	38149151	38149151	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032816	exon2	c.G101A	p.R34H	.	.	.
GPATCH1	55094	broad.mit.edu	36	19	38270990	38270990	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018025	exon2	c.T184C	p.F62L	.	.	.
EEF2	1938	broad.mit.edu	36	19	3934209	3934209	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001961	exon3	c.T299G	p.I100S	.	.	.
GPI	2821	broad.mit.edu	36	19	39549114	39549114	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000175	exon2	c.G147A	p.G49G	.	.	.
WTIP	126374	broad.mit.edu	36	19	39676323	39676323	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080436	exon5	c.C987T	p.T329T	.	.	.
HAUS5	23354	broad.mit.edu	36	19	40796797	40796797	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015302	exon4	c.C215T	p.P72L	.	.	.
RBM42	79171	broad.mit.edu	36	19	40814138	40814138	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024321	exon4	c.C433T	p.R145W	.	.	.
PRODH2	58510	broad.mit.edu	36	19	40995611	40995611	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021232	exon2	c.G165A	p.G55G	.	.	.
ZNF568	374900	broad.mit.edu	36	19	42132725	42132725	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198539	exon7	c.C830T	p.P277L	.	.	.
ZNF571	51276	broad.mit.edu	36	19	42747464	42747464	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016536	exon4	c.G1706A	p.R569H	.	.	.
HNRNPL	3191	broad.mit.edu	36	19	44029808	44029808	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001533	exon2	c.T374C	p.F125S	.	.	.
SARS2	54938	broad.mit.edu	36	19	44100581	44100581	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145901	exon11	c.C961T	p.P321S	.	.	.
PAPL	390928	broad.mit.edu	36	19	44283481	44283481	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004318	exon8	c.G860A	p.R287Q	.	.	.
NCCRP1	342897	broad.mit.edu	36	19	44383212	44383212	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001414	exon6	c.C804T	p.S268S	.	.	.
PAF1	54623	broad.mit.edu	36	19	44570874	44570874	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019088	exon11	c.T931C	p.Y311H	.	.	.
LRG1	116844	broad.mit.edu	36	19	4489846	4489846	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052972	exon2	c.T150C	p.H50H	.	.	.
DYRK1B	9149	broad.mit.edu	36	19	45012945	45012945	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006483	exon4	c.C282T	p.D94D	.	.	.
AKT2	208	broad.mit.edu	36	19	45452988	45452988	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001626	exon4	c.G204A	p.P68P	.	.	.
PRX	57716	broad.mit.edu	36	19	45594639	45594639	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181882	exon7	c.C1460T	p.P487L	.	.	.
ARHGEF1	9138	broad.mit.edu	36	19	47090140	47090140	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198977	exon8	c.T566C	p.I189T	.	.	.
PSG7	5676	broad.mit.edu	36	19	48121782	48121782	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002783	exon5	c.T1226C	p.V409A	.	.	.
PSG9	5678	broad.mit.edu	36	19	48454435	48454435	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002784	exon5	c.C1002T	p.L334L	.	.	.
CD177	57126	broad.mit.edu	36	19	48551749	48551749	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020406	exon4	c.A476G	p.Y159C	.	.	.
PVR	5817	broad.mit.edu	36	19	49856907	49856907	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001135768	exon8	c.G1108T	p.G370C	.	.	.
PPM1N	147699	broad.mit.edu	36	19	50695051	50695051	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080401	exon2	c.G944A	p.S315N	.	.	.
PPM1N	147699	broad.mit.edu	36	19	50695783	50695783	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080401	exon4	c.G1199A	p.C400Y	.	.	.
MYPOP	339344	broad.mit.edu	36	19	51086414	51086414	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001012643	exon3	c.A507G	p.S169S	.	.	.
GRLF1	2909	broad.mit.edu	36	19	52115786	52115786	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004491	exon1	c.T2014C	p.S672P	.	.	.
DHDH	27294	broad.mit.edu	36	19	54137583	54137583	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014475	exon5	c.G694A	p.V232M	.	.	.
CD37	951	broad.mit.edu	36	19	54533796	54533796	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040031	exon6	c.C271T	p.Q91X	.	.	.
ZNF473	25888	broad.mit.edu	36	19	55241054	55241054	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001006656	exon5	c.A1542G	p.P514P	.	.	.
KCNC3	3748	broad.mit.edu	36	19	55518764	55518764	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004977	exon2	c.C1258T	p.R420C	.	.	.
POLD1	5424	broad.mit.edu	36	19	55597135	55597135	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002691	exon5	c.C531T	p.R177R	.	.	.
ASPDH	554235	broad.mit.edu	36	19	55708054	55708054	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024656	exon2	c.C59T	p.A20V	.	.	.
SYT3	84258	broad.mit.edu	36	19	55825058	55825058	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032298	exon3	c.G857A	p.G286D	.	.	.
IGLON5	402665	broad.mit.edu	36	19	56523784	56523784	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001101372	exon8	c.G970A	p.A324T	.	.	.
ZNF175	7728	broad.mit.edu	36	19	56782032	56782032	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007147	exon5	c.C636T	p.N212N	.	.	.
ZNF175	7728	broad.mit.edu	36	19	56782322	56782322	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007147	exon5	c.G926A	p.C309Y	.	.	.
PPP2R1A	5518	broad.mit.edu	36	19	57416173	57416173	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014225	exon12	c.G1493A	p.R498H	.	.	.
ZNF808	388558	broad.mit.edu	36	19	57750312	57750312	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039886	exon5	c.C2331T	p.S777S	.	.	.
FUT5	2527	broad.mit.edu	36	19	5817957	5817957	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002034	exon2	c.C780T	p.F260F	.	.	.
CNOT3	4849	broad.mit.edu	36	19	59343784	59343784	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014516	exon11	c.G984A	p.P328P	.	.	.
NLRP7	199713	broad.mit.edu	36	19	60143455	60143455	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139176	exon4	c.G544A	p.V182M	.	.	.
PTPRH	5794	broad.mit.edu	36	19	60391267	60391267	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002842	exon13	c.C2466T	p.D822D	.	.	.
BRSK1	84446	broad.mit.edu	36	19	60492773	60492773	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032430	exon4	c.T431A	p.L144Q	.	.	.
NLRP9	338321	broad.mit.edu	36	19	60936095	60936095	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176820	exon2	c.C914T	p.S305L	.	.	.
ACSBG2	81616	broad.mit.edu	36	19	6128394	6128394	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030924	exon8	c.C893T	p.A298V	.	.	.
ZNF264	9422	broad.mit.edu	36	19	62415691	62415691	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003417	exon4	c.C1414T	p.R472C	.	.	.
ZNF419	79744	broad.mit.edu	36	19	62697118	62697118	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098494	exon4	c.G1285A	p.G429R	.	.	.
ZNF419	79744	broad.mit.edu	36	19	62697214	62697214	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098494	exon4	c.C1381T	p.R461C	.	.	.
ZSCAN4	201516	broad.mit.edu	36	19	62881451	62881451	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152677	exon5	c.A668T	p.Q223L	.	.	.
ZNF776	284309	broad.mit.edu	36	19	62957340	62957340	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173632	exon3	c.G1030A	p.G344R	.	.	.
ZNF256	10172	broad.mit.edu	36	19	63145164	63145164	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005773	exon3	c.C824A	p.S275Y	.	.	.
ZNF329	79673	broad.mit.edu	36	19	63332161	63332161	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024620	exon4	c.G522A	p.S174S	.	.	.
ZNF324	25799	broad.mit.edu	36	19	63674500	63674500	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014347	exon4	c.C829T	p.R277C	.	.	.
SH2D3A	10045	broad.mit.edu	36	19	6706238	6706238	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005490	exon5	c.C585T	p.A195A	.	.	.
LPPR3	79948	broad.mit.edu	36	19	765918	765918	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024888	exon5	c.C567T	p.S189S	.	.	.
CLEC4M	10332	broad.mit.edu	36	19	7736087	7736087	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144904	exon2	c.C63T	p.G21G	.	.	.
MAP2K7	5609	broad.mit.edu	36	19	7883229	7883229	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145185	exon11	c.G1173A	p.A391A	.	.	.
MUC16	94025	broad.mit.edu	36	19	8937992	8937992	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon3	c.C10454T	p.A3485V	.	.	.
OR7G1	125962	broad.mit.edu	36	19	9086953	9086953	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005192	exon1	c.G487A	p.V163I	.	.	.
PDE4A	5141	broad.mit.edu	36	19	10404147	10404147	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001111309	exon1	c.37delC	p.P13fs	.	.	.
MLL4	9757	broad.mit.edu	36	19	40914842	40914842	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014727	exon27	c.5631delG	p.L1877fs	.	.	.
IGFN1	91156	broad.mit.edu	36	1	199453041	199453042	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001164586	exon17	c.9599_9600insC	p.L3200fs	.	.	.
OR2M4	26245	broad.mit.edu	36	1	246469380	246469381	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017504	exon1	c.527_528insT	p.H176fs	.	.	.
LRRC39	127495	broad.mit.edu	36	1	100390636	100390636	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144620	exon9	c.T845C	p.L282S	.	.	.
S1PR1	1901	broad.mit.edu	36	1	101477333	101477333	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001400	exon2	c.A205G	p.T69A	.	.	.
C1orf127	148345	broad.mit.edu	36	1	10931453	10931453	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001170754	exon12	c.G1326A	p.P442P	.	.	.
CHIA	27159	broad.mit.edu	36	1	111664531	111664531	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201653	exon12	c.G1351A	p.V451M	.	.	.
C1orf183	55924	broad.mit.edu	36	1	112071458	112071458	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019099	exon2	c.G549T	p.E183D	.	.	.
TRIM33	51592	broad.mit.edu	36	1	114777762	114777762	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015906	exon5	c.G1040T	p.R347M	.	.	.
CSDE1	7812	broad.mit.edu	36	1	115083939	115083939	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130523	exon4	c.A234C	p.K78N	.	.	.
TSPAN2	10100	broad.mit.edu	36	1	115406298	115406298	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005725	exon3	c.C251T	p.S84L	.	.	.
FBXO44	93611	broad.mit.edu	36	1	11638624	11638624	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033182	exon2	c.C145T	p.R49C	.	.	.
C1orf161	126868	broad.mit.edu	36	1	116472390	116472390	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152367	exon6	c.C762T	p.G254G	.	.	.
CD2	914	broad.mit.edu	36	1	117104742	117104742	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001767	exon3	c.G578A	p.S193N	.	.	.
PTGFRN	5738	broad.mit.edu	36	1	117293533	117293533	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020440	exon4	c.G1029A	p.S343S	.	.	.
TRIM45	80263	broad.mit.edu	36	1	117457508	117457508	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145635	exon5	c.G1536A	p.M512I	.	.	.
TBX15	6913	broad.mit.edu	36	1	119267588	119267588	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152380	exon5	c.T537C	p.N179N	.	.	.
MFN2	9927	broad.mit.edu	36	1	11989800	11989800	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127660	exon16	c.G1976T	p.R659M	.	.	.
PHGDH	26227	broad.mit.edu	36	1	120079483	120079483	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006623	exon7	c.T686C	p.V229A	.	.	.
FAM72B	653820	broad.mit.edu	36	1	120656079	120656079	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100910	exon4	c.A420G	p.L140L	.	.	.
AADACL4	343066	broad.mit.edu	36	1	12648905	12648905	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013630	exon4	c.G796A	p.A266T	.	.	.
GJA8	2703	broad.mit.edu	36	1	145847810	145847810	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005267	exon2	c.G1104T	p.E368D	.	.	.
MCL1	4170	broad.mit.edu	36	1	148817476	148817476	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001197320	exon3	c.T345C	p.I115I	.	.	.
CTSS	1520	broad.mit.edu	36	1	149003857	149003857	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004079	exon2	c.C7T	p.R3W	.	.	.
FLG	2312	broad.mit.edu	36	1	150551274	150551274	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002016	exon3	c.C2712T	p.D904D	.	.	.
FLG2	388698	broad.mit.edu	36	1	150590754	150590754	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001014342	exon3	c.C6132T	p.H2044H	.	.	.
S100A4	6275	broad.mit.edu	36	1	151782877	151782877	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002961	exon3	c.G288A	p.K96K	.	.	.
NUP210L	91181	broad.mit.edu	36	1	152356887	152356887	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207308	exon12	c.A1558T	p.R520W	.	.	.
SHC1	6464	broad.mit.edu	36	1	153209197	153209197	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130041	exon2	c.C100T	p.P34S	.	.	.
HCN3	57657	broad.mit.edu	36	1	153523646	153523646	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020897	exon7	c.C1536T	p.C512C	.	.	.
PMF1	11243	broad.mit.edu	36	1	154470070	154470070	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199663	exon3	c.G295A	p.G99R	.	.	.
APOA1BP	128240	broad.mit.edu	36	1	154830450	154830450	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144772	exon6	c.C817T	p.L273L	.	.	.
ISG20L2	81875	broad.mit.edu	36	1	154963548	154963548	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030980	exon1	c.A521G	p.K174R	.	.	.
C1orf66	51093	broad.mit.edu	36	1	154968822	154968822	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015997	exon3	c.G362A	p.R121Q	.	.	.
ARHGEF11	9826	broad.mit.edu	36	1	155198094	155198094	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198236	exon14	c.C1238T	p.A413V	.	.	.
OR10J3	441911	broad.mit.edu	36	1	157550102	157550102	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004467	exon1	c.G972A	p.A324A	.	.	.
IGSF9	57549	broad.mit.edu	36	1	158165402	158165402	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135050	exon19	c.C2400T	p.S800S	.	.	.
SPEN	23013	broad.mit.edu	36	1	16075361	16075361	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015001	exon3	c.G482A	p.R161Q	.	.	.
MAEL	84944	broad.mit.edu	36	1	165240107	165240107	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032858	exon6	c.A590G	p.Q197R	.	.	.
SCYL3	57147	broad.mit.edu	36	1	168102673	168102673	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181093	exon8	c.C803T	p.T268M	.	.	.
BAT2L2	23215	broad.mit.edu	36	1	169802143	169802143	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015172	exon21	c.C6259T	p.R2087W	.	.	.
TNN	63923	broad.mit.edu	36	1	173363847	173363847	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022093	exon14	c.C3102T	p.G1034G	.	.	.
PAPPA2	60676	broad.mit.edu	36	1	174830399	174830399	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020318	exon3	c.C1036T	p.R346C	.	.	.
FAM5B	57795	broad.mit.edu	36	1	175516581	175516581	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021165	exon8	c.G1646A	p.R549H	.	.	.
PADI6	353238	broad.mit.edu	36	1	17594673	17594673	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207421	exon13	c.A1546C	p.R516R	.	.	.
RGL1	23179	broad.mit.edu	36	1	182142820	182142820	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015149	exon15	c.G1629A	p.S543S	.	.	.
TPR	7175	broad.mit.edu	36	1	184570170	184570170	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003292	exon36	c.C5092T	p.R1698C	.	.	.
ALDH4A1	8659	broad.mit.edu	36	1	19076586	19076586	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170726	exon10	c.G1048A	p.A350T	.	.	.
UBR4	23352	broad.mit.edu	36	1	19311932	19311932	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020765	exon78	c.G11474A	p.R3825H	.	.	.
CFH	3075	broad.mit.edu	36	1	194925230	194925230	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000186	exon8	c.G1022A	p.R341H	.	.	.
ASPM	259266	broad.mit.edu	36	1	195338930	195338930	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018136	exon18	c.T6074C	p.V2025A	.	.	.
CRB1	23418	broad.mit.edu	36	1	195657051	195657051	+	Silent	SNP	C	T	T	rs35193230	byFrequency	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201253	exon6	c.C1470T	p.G490G	.	.	.
LHX9	56956	broad.mit.edu	36	1	196157356	196157356	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020204	exon3	c.G677A	p.R226Q	.	.	.
MYBPH	4608	broad.mit.edu	36	1	201407259	201407259	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004997	exon5	c.G668A	p.R223H	.	.	.
SOX13	9580	broad.mit.edu	36	1	202361727	202361727	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005686	exon14	c.A1711G	p.M571V	.	.	.
NFASC	23114	broad.mit.edu	36	1	203180132	203180132	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001160331	exon1	c.C66T	p.G22G	.	.	.
DSTYK	25778	broad.mit.edu	36	1	203423513	203423513	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015375	exon2	c.C310A	p.L104I	.	.	.
TMCC2	9911	broad.mit.edu	36	1	203505264	203505264	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014858	exon3	c.C1311T	p.G437G	.	.	.
LAMB3	3914	broad.mit.edu	36	1	207867520	207867520	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017402	exon11	c.G1316A	p.R439Q	.	.	.
LAMB3	3914	broad.mit.edu	36	1	207869891	207869891	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017402	exon9	c.T946C	p.C316R	.	.	.
TRAF3IP3	80342	broad.mit.edu	36	1	208022036	208022036	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025228	exon17	c.C1576T	p.R526X	.	.	.
DTL	51514	broad.mit.edu	36	1	210318202	210318202	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016448	exon12	c.G1100A	p.C367Y	.	.	.
TMEM206	55248	broad.mit.edu	36	1	210625263	210625263	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198862	exon5	c.G654A	p.T218T	.	.	.
ECE1	1889	broad.mit.edu	36	1	21459418	21459418	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001113348	exon5	c.G500A	p.R167H	.	.	.
EPRS	2058	broad.mit.edu	36	1	218286326	218286326	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004446	exon1	c.T28C	p.S10P	.	.	.
C1orf65	164127	broad.mit.edu	36	1	221634946	221634946	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152610	exon1	c.C1506T	p.R502R	.	.	.
TP53BP2	7159	broad.mit.edu	36	1	222038594	222038594	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031685	exon17	c.C3209T	p.A1070V	.	.	.
ACBD3	64746	broad.mit.edu	36	1	224415892	224415892	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022735	exon4	c.C691T	p.R231W	.	.	.
PRSS38	339501	broad.mit.edu	36	1	226070185	226070185	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183062	exon1	c.G145A	p.V49M	.	.	.
TRIM17	51127	broad.mit.edu	36	1	226668156	226668156	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016102	exon3	c.C490T	p.Q164X	.	.	.
C1QC	714	broad.mit.edu	36	1	22846639	22846639	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172369	exon3	c.G514A	p.A172T	.	.	.
TTC13	79573	broad.mit.edu	36	1	229134178	229134178	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024525	exon10	c.T1052C	p.V351A	.	.	.
LGALS8	3964	broad.mit.edu	36	1	234772941	234772941	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201545	exon9	c.C653T	p.P218L	.	.	.
HEATR1	55127	broad.mit.edu	36	1	234789672	234789672	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018072	exon34	c.G4735A	p.A1579T	.	.	.
RYR2	6262	broad.mit.edu	36	1	236014703	236014703	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035	exon90	c.C13068T	p.A4356A	.	.	.
WDR64	128025	broad.mit.edu	36	1	239941749	239941749	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144625	exon8	c.C967A	p.P323T	.	.	.
PLD5	200150	broad.mit.edu	36	1	240450028	240450028	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195811	exon5	c.C434T	p.T145M	.	.	.
NIPAL3	57185	broad.mit.edu	36	1	24639264	24639264	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020448	exon3	c.G109A	p.A37T	.	.	.
NIPAL3	57185	broad.mit.edu	36	1	24657990	24657990	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020448	exon9	c.T799A	p.Y267N	.	.	.
RCAN3	11123	broad.mit.edu	36	1	24734318	24734318	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013441	exon5	c.G690A	p.A230A	.	.	.
CNKSR1	10256	broad.mit.edu	36	1	26386541	26386541	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006314	exon16	c.A1435G	p.T479A	.	.	.
MAP3K6	9064	broad.mit.edu	36	1	27563852	27563852	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004672	exon2	c.G479A	p.R160Q	.	.	.
SRSF4	6429	broad.mit.edu	36	1	29348033	29348033	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005626	exon6	c.A961G	p.R321G	.	.	.
CCDC28B	79140	broad.mit.edu	36	1	32442511	32442511	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024296	exon4	c.C469T	p.P157S	.	.	.
PRDM16	63976	broad.mit.edu	36	1	3317832	3317832	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022114	exon9	c.C1211T	p.T404M	.	.	.
ZNF362	149076	broad.mit.edu	36	1	33537180	33537180	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152493	exon9	c.C1209G	p.H403Q	.	.	.
PHC2	1912	broad.mit.edu	36	1	33567151	33567151	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198040	exon13	c.C2329T	p.R777W	.	.	.
ZSCAN20	7579	broad.mit.edu	36	1	33731644	33731644	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145238	exon7	c.G1715A	p.R572Q	.	.	.
GJB3	2707	broad.mit.edu	36	1	35023267	35023267	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024009	exon2	c.G317A	p.R106H	.	.	.
NCDN	23154	broad.mit.edu	36	1	35803490	35803490	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001014841	exon7	c.G1778A	p.R593Q	.	.	.
MEAF6	64769	broad.mit.edu	36	1	37752913	37752913	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022756	exon1	c.G22C	p.A8P	.	.	.
MACF1	23499	broad.mit.edu	36	1	39700169	39700169	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012090	exon90	c.C15374T	p.T5125I	.	.	.
KIAA0467	23334	broad.mit.edu	36	1	43668589	43668589	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015284	exon16	c.A1725G	p.T575T	.	.	.
KDM4A	9682	broad.mit.edu	36	1	43898670	43898670	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014663	exon4	c.G429A	p.K143K	.	.	.
PTCH2	8643	broad.mit.edu	36	1	45069194	45069194	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166292	exon6	c.G726T	p.Q242H	.	.	.
FAAH	2166	broad.mit.edu	36	1	46644569	46644569	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001441	exon7	c.T893G	p.L298R	.	.	.
CYP4B1	1580	broad.mit.edu	36	1	47052572	47052572	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099772	exon7	c.C880T	p.R294W	.	.	.
SLC5A9	200010	broad.mit.edu	36	1	48461097	48461097	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135181	exon1	c.C102T	p.H34H	.	.	.
BEND5	79656	broad.mit.edu	36	1	48980958	48980958	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024603	exon4	c.G818A	p.S273N	.	.	.
FAM151A	338094	broad.mit.edu	36	1	54848733	54848733	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176782	exon7	c.G1024A	p.V342M	.	.	.
BSND	7809	broad.mit.edu	36	1	55245345	55245345	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_057176	exon3	c.A360C	p.K120N	.	.	.
HOOK1	51361	broad.mit.edu	36	1	60098534	60098534	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015888	exon15	c.A1478G	p.Q493R	.	.	.
IL12RB2	3595	broad.mit.edu	36	1	67634022	67634022	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001559	exon16	c.C2251T	p.P751S	.	.	.
NEGR1	257194	broad.mit.edu	36	1	71645765	71645765	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173808	exon7	c.G1017A	p.L339L	.	.	.
LRRIQ3	127255	broad.mit.edu	36	1	74279659	74279659	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105659	exon7	c.G1544A	p.R515H	.	.	.
C1orf173	127254	broad.mit.edu	36	1	74879651	74879651	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002912	exon5	c.T396C	p.R132R	.	.	.
ELTD1	64123	broad.mit.edu	36	1	79176393	79176393	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022159	exon5	c.C556A	p.L186I	.	.	.
LPAR3	23566	broad.mit.edu	36	1	85103910	85103910	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012152	exon2	c.C482T	p.A161V	.	.	.
NOC2L	26155	broad.mit.edu	36	1	873734	873734	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015658	exon13	c.G1556A	p.R519Q	.	.	.
PKN2	5586	broad.mit.edu	36	1	89044260	89044260	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006256	exon12	c.A1775C	p.E592A	.	.	.
GBP1	2633	broad.mit.edu	36	1	89291677	89291677	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002053	exon11	c.A1728G	p.I576M	.	.	.
CA6	765	broad.mit.edu	36	1	8939810	8939810	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001215	exon3	c.G287A	p.R96H	.	.	.
LRRC8D	55144	broad.mit.edu	36	1	90172031	90172031	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134479	exon3	c.C816T	p.S272S	.	.	.
ZNF326	284695	broad.mit.edu	36	1	90265779	90265779	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182976	exon12	c.G1680T	p.E560D	.	.	.
HFM1	164045	broad.mit.edu	36	1	91619063	91619063	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017975	exon7	c.T867C	p.F289F	.	.	.
BCAR3	8412	broad.mit.edu	36	1	93827349	93827349	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003567	exon5	c.C702T	p.Y234Y	.	.	.
ABCD3	5825	broad.mit.edu	36	1	94744692	94744692	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002858	exon21	c.T1751C	p.L584S	.	.	.
CLSTN1	22883	broad.mit.edu	36	1	9726615	9726615	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014944	exon8	c.G1240A	p.G414R	.	.	.
SPAG17	200162	broad.mit.edu	36	1	118443761	118443763	+	In_Frame_Del	DEL	GAA	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	GAA	GAA	GAA	-	GAA	GAA	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206996	exon6	c.818_820del	p.273_274del	.	.	.
C1orf144	26099	broad.mit.edu	36	1	16590476	16590476	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114600	exon2	c.71delA	p.E24fs	.	.	.
NAV1	89796	broad.mit.edu	36	1	200039451	200039452	+	Frame_Shift_Del	DEL	AA	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	AA	AA	AA	-	AA	AA	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001167738	exon14	c.2452_2453del	p.818_818del	.	.	.
THAP3	90326	broad.mit.edu	36	1	6615506	6615508	+	In_Frame_Del	DEL	AGA	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	AGA	AGA	AGA	-	AGA	AGA	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195752	exon5	c.499_501del	p.167_167del	.	.	.
PALMD	54873	broad.mit.edu	36	1	99927752	99927754	+	In_Frame_Del	DEL	GAG	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	GAG	GAG	GAG	-	GAG	GAG	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017734	exon7	c.1348_1350del	p.450_450del	.	.	.
JAG1	182	broad.mit.edu	36	20	10573852	10573852	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000214	exon17	c.T2166C	p.D722D	.	.	.
JAG1	182	broad.mit.edu	36	20	10576734	10576734	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000214	exon13	c.A1594T	p.N532Y	.	.	.
ZNF133	7692	broad.mit.edu	36	20	18244910	18244910	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003434	exon7	c.G1412A	p.G471D	.	.	.
SLC24A3	57419	broad.mit.edu	36	20	19627227	19627227	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020689	exon15	c.C1622A	p.A541D	.	.	.
SSTR4	6754	broad.mit.edu	36	20	22964479	22964479	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001052	exon1	c.G359A	p.R120H	.	.	.
VSX1	30813	broad.mit.edu	36	20	25008077	25008077	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199425	exon2	c.G498A	p.R166R	.	.	.
TMC2	117532	broad.mit.edu	36	20	2545827	2545827	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080751	exon16	c.C2050T	p.R684C	.	.	.
CHMP4B	128866	broad.mit.edu	36	20	31903557	31903557	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176812	exon4	c.C497T	p.A166V	.	.	.
MYH7B	57644	broad.mit.edu	36	20	33041380	33041380	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020884	exon20	c.C1890T	p.G630G	.	.	.
C20orf117	140710	broad.mit.edu	36	20	34856245	34856245	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080627	exon14	c.G3654A	p.S1218S	.	.	.
ATRN	8455	broad.mit.edu	36	20	3490977	3490977	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139322	exon9	c.A1502G	p.Y501C	.	.	.
ACTR5	79913	broad.mit.edu	36	20	36829530	36829530	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024855	exon8	c.G1443T	p.K481N	.	.	.
CHD6	84181	broad.mit.edu	36	20	39483436	39483436	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032221	exon31	c.G5253T	p.E1751D	.	.	.
CHD6	84181	broad.mit.edu	36	20	39576896	39576896	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032221	exon4	c.C664T	p.R222W	.	.	.
C20orf111	51526	broad.mit.edu	36	20	42259750	42259750	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016470	exon4	c.C235T	p.R79C	.	.	.
SYS1-DBNDD2	767557	broad.mit.edu	36	20	43472088	43472088	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001197140	exon4	c.T380C	p.L127P	.	.	.
ZSWIM1	90204	broad.mit.edu	36	20	43945639	43945639	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080603	exon2	c.G1001A	p.C334Y	.	.	.
ZNF334	55713	broad.mit.edu	36	20	44564068	44564068	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018102	exon5	c.A1317G	p.G439G	.	.	.
SLC2A10	81031	broad.mit.edu	36	20	44787533	44787533	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030777	exon2	c.T451C	p.Y151H	.	.	.
PREX1	57580	broad.mit.edu	36	20	46695906	46695906	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020820	exon26	c.C3402T	p.S1134S	.	.	.
PREX1	57580	broad.mit.edu	36	20	46700123	46700123	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020820	exon24	c.G2846A	p.S949N	.	.	.
DDX27	55661	broad.mit.edu	36	20	47271476	47271476	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017895	exon2	c.T267C	p.T89T	.	.	.
SPATA2	9825	broad.mit.edu	36	20	47958308	47958308	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135773	exon2	c.C127T	p.R43W	.	.	.
NFATC2	4773	broad.mit.edu	36	20	49504505	49504505	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012340	exon6	c.T1836C	p.T612T	.	.	.
SALL4	57167	broad.mit.edu	36	20	49840169	49840169	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020436	exon2	c.G2260A	p.V754M	.	.	.
DOK5	55816	broad.mit.edu	36	20	52693462	52693462	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018431	exon7	c.G794A	p.R265H	.	.	.
AURKA	6790	broad.mit.edu	36	20	54394871	54394871	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198436	exon4	c.C168T	p.R56R	.	.	.
ZBP1	81030	broad.mit.edu	36	20	55618711	55618711	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001160417	exon7	c.C990T	p.D330D	.	.	.
CDH4	1002	broad.mit.edu	36	20	59882244	59882244	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001794	exon7	c.C943T	p.R315W	.	.	.
TAF4	6874	broad.mit.edu	36	20	60009095	60009095	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003185	exon10	c.C2564T	p.T855M	.	.	.
LSM14B	149986	broad.mit.edu	36	20	60141763	60141763	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144703	exon8	c.G1009A	p.E337K	.	.	.
OSBPL2	9885	broad.mit.edu	36	20	60302307	60302307	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014835	exon14	c.G1376A	p.R459Q	.	.	.
COL9A3	1299	broad.mit.edu	36	20	60930590	60930590	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001853	exon18	c.C930T	p.G310G	.	.	.
SLC17A9	63910	broad.mit.edu	36	20	61058659	61058659	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022082	exon2	c.C157A	p.Q53K	.	.	.
ANGPT4	51378	broad.mit.edu	36	20	803029	803029	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015985	exon8	c.G1249A	p.A417T	.	.	.
PLCB4	5332	broad.mit.edu	36	20	9397274	9397274	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000933	exon32	c.C3269T	p.A1090V	.	.	.
ANKRD5	63926	broad.mit.edu	36	20	9973155	9973155	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198798	exon4	c.C660T	p.H220H	.	.	.
WFDC12	128488	broad.mit.edu	36	20	43186228	43186228	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080869	exon2	c.172delG	p.E58fs	.	.	.
SLC23A2	9962	broad.mit.edu	36	20	4785735	4785735	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_203327	exon17	c.1836delA	p.K612fs	.	.	.
C20orf200	253868	broad.mit.edu	36	20	60554151	60554151	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
IL10RB	3588	broad.mit.edu	36	21	33590462	33590462	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000628	exon7	c.A908C	p.E303A	.	.	.
DNAJC28	54943	broad.mit.edu	36	21	33782899	33782899	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040192	exon2	c.A672T	p.G224G	.	.	.
HLCS	3141	broad.mit.edu	36	21	37230832	37230832	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000411	exon5	c.T783C	p.G261G	.	.	.
PSMG1	8624	broad.mit.edu	36	21	39477116	39477116	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003720	exon1	c.G66A	p.E22E	.	.	.
WDR4	10785	broad.mit.edu	36	21	43143375	43143375	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033661	exon11	c.G1092A	p.T364T	.	.	.
TRAPPC10	7109	broad.mit.edu	36	21	44342815	44342815	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003274	exon21	c.G3318A	p.E1106E	.	.	.
TPTE	7179	broad.mit.edu	36	21	9928802	9928802	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199259	exon23	c.A1576G	p.S526G	.	.	.
TTC3	7267	broad.mit.edu	36	21	37476997	37476997	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001894	exon36	c.4669delA	p.K1557fs	.	.	.
TTC28	23331	broad.mit.edu	36	22	26724584	26724585	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001145418	exon16	c.5063_5064insG	p.E1688fs	.	.	.
C22orf40	150383	broad.mit.edu	36	22	45022749	45022750	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_207327	exon2	c.97_98insC	p.N33fs	.	.	.
PEX26	55670	broad.mit.edu	36	22	16947926	16947926	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017929	exon5	c.T716C	p.L239P	.	.	.
DGCR2	9993	broad.mit.edu	36	22	17406486	17406486	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001173534	exon9	c.C1413T	p.S471S	.	.	.
TBX1	6899	broad.mit.edu	36	22	18150479	18150479	+	Silent	SNP	C	T	T	rs41298848	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005992	exon9	c.C1053T	p.D351D	.	.	.
TXNRD2	10587	broad.mit.edu	36	22	18298587	18298587	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006440	exon2	c.C138T	p.G46G	.	.	.
RAB36	9609	broad.mit.edu	36	22	21830190	21830190	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004914	exon7	c.G604A	p.A202T	.	.	.
BCR	613	broad.mit.edu	36	22	21957240	21957240	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021574	exon10	c.G2258A	p.C753Y	.	.	.
C22orf43	51233	broad.mit.edu	36	22	22286349	22286349	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016449	exon9	c.A594T	p.E198D	.	.	.
MYO18B	84700	broad.mit.edu	36	22	24753234	24753234	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032608	exon43	c.G7294A	p.D2432N	.	.	.
MTMR3	8897	broad.mit.edu	36	22	28746779	28746779	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153050	exon17	c.C3131T	p.T1044I	.	.	.
SF3A1	10291	broad.mit.edu	36	22	29065119	29065119	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005409	exon10	c.G1302T	p.K434N	.	.	.
MORC2	22880	broad.mit.edu	36	22	29675789	29675789	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014941	exon6	c.A80G	p.K27R	.	.	.
PIK3IP1	113791	broad.mit.edu	36	22	30009235	30009235	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052880	exon6	c.T627C	p.C209C	.	.	.
PATZ1	23598	broad.mit.edu	36	22	30071209	30071209	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032051	exon1	c.T380C	p.V127A	.	.	.
EIF4ENIF1	56478	broad.mit.edu	36	22	30167840	30167840	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019843	exon17	c.A2471G	p.H824R	.	.	.
RFPL2	10739	broad.mit.edu	36	22	30917275	30917275	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001159545	exon4	c.C351T	p.S117S	.	.	.
LARGE	9215	broad.mit.edu	36	22	32487383	32487383	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133642	exon2	c.T81C	p.I27I	.	.	.
APOL5	80831	broad.mit.edu	36	22	34452681	34452681	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030642	exon3	c.C620A	p.P207H	.	.	.
ELFN2	114794	broad.mit.edu	36	22	36100543	36100543	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052906	exon3	c.G978A	p.V326V	.	.	.
EIF3L	51386	broad.mit.edu	36	22	36601867	36601867	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016091	exon10	c.G980A	p.R327H	.	.	.
CBY1	25776	broad.mit.edu	36	22	37397068	37397068	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002880	exon5	c.C232T	p.R78C	.	.	.
MGAT3	4248	broad.mit.edu	36	22	38213468	38213468	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098270	exon1	c.C170T	p.T57M	.	.	.
TNRC6B	23112	broad.mit.edu	36	22	38992317	38992317	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015088	exon5	c.C2137T	p.R713X	.	.	.
XPNPEP3	63929	broad.mit.edu	36	22	39612398	39612398	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022098	exon4	c.G725A	p.R242H	.	.	.
TEF	7008	broad.mit.edu	36	22	40121743	40121743	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145398	exon4	c.C655T	p.R219W	.	.	.
SREBF2	6721	broad.mit.edu	36	22	40603297	40603297	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004599	exon8	c.A1505G	p.Q502R	.	.	.
POLDIP3	84271	broad.mit.edu	36	22	41318018	41318018	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178136	exon6	c.G821A	p.C274Y	.	.	.
ARFGAP3	26286	broad.mit.edu	36	22	41534770	41534770	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014570	exon13	c.A1267G	p.N423D	.	.	.
ATXN10	25814	broad.mit.edu	36	22	44617680	44617680	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001167621	exon10	c.C1191T	p.G397G	.	.	.
CRELD2	79174	broad.mit.edu	36	22	48705102	48705102	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024324	exon9	c.G902T	p.C301F	.	.	.
SBF1	6305	broad.mit.edu	36	22	49249970	49249970	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002972	exon14	c.C1495T	p.R499X	.	.	.
RBM44	375316	broad.mit.edu	36	2	238390728	238390729	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080504	exon3	c.430_431insT	p.V144fs	.	.	.
DOK1	1796	broad.mit.edu	36	2	74635966	74635967	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001381	exon2	c.238_239insC	p.T80fs	.	.	.
IL1RL1	9173	broad.mit.edu	36	2	102321742	102321742	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003856	exon3	c.G75T	p.W25C	.	.	.
UXS1	80146	broad.mit.edu	36	2	106128146	106128146	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025076	exon6	c.A389C	p.E130A	.	.	.
PAX8	7849	broad.mit.edu	36	2	113715756	113715756	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013953	exon7	c.C619A	p.R207R	.	.	.
CLASP1	23332	broad.mit.edu	36	2	121821173	121821173	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142274	exon37	c.C4240T	p.R1414C	.	.	.
IMP4	92856	broad.mit.edu	36	2	130820139	130820139	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033416	exon7	c.G673A	p.D225N	.	.	.
THSD7B	80731	broad.mit.edu	36	2	137530741	137530741	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080427	exon2	c.C328T	p.R110W	.	.	.
NXPH2	11249	broad.mit.edu	36	2	139145650	139145650	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007226	exon2	c.A107G	p.D36G	.	.	.
ZEB2	9839	broad.mit.edu	36	2	144878111	144878111	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171653	exon5	c.G577A	p.D193N	.	.	.
NEB	4703	broad.mit.edu	36	2	152210957	152210957	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164507	exon55	c.A7469G	p.Q2490R	.	.	.
NBAS	51594	broad.mit.edu	36	2	15611692	15611692	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015909	exon4	c.T231C	p.P77P	.	.	.
MYCN	4613	broad.mit.edu	36	2	16003344	16003344	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005378	exon3	c.C1069T	p.R357C	.	.	.
MARCH7	64844	broad.mit.edu	36	2	160327693	160327693	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022826	exon8	c.C1950T	p.C650C	.	.	.
TBR1	10716	broad.mit.edu	36	2	161988888	161988888	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006593	exon6	c.G1953A	p.S651S	.	.	.
PXDN	7837	broad.mit.edu	36	2	1632441	1632441	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012293	exon17	c.C2118T	p.N706N	.	.	.
SCN7A	6332	broad.mit.edu	36	2	167030629	167030629	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002976	exon7	c.T779C	p.M260T	.	.	.
LRP2	4036	broad.mit.edu	36	2	169746344	169746344	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004525	exon52	c.C10029T	p.R3343R	.	.	.
FASTKD1	79675	broad.mit.edu	36	2	170095415	170095415	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024622	exon14	c.T2370C	p.N790N	.	.	.
SLC25A12	8604	broad.mit.edu	36	2	172350196	172350196	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003705	exon18	c.G1871A	p.R624H	.	.	.
CDCA7	83879	broad.mit.edu	36	2	173936364	173936364	+	Silent	SNP	C	T	T	rs35285795	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031942	exon4	c.C549T	p.S183S	.	.	.
OSBPL6	114880	broad.mit.edu	36	2	178968519	178968519	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032523	exon25	c.C2792A	p.P931H	.	.	.
TTN	7273	broad.mit.edu	36	2	179117020	179117020	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon174	c.C68901T	p.C22967C	.	.	.
TTN	7273	broad.mit.edu	36	2	179347079	179347079	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133379	exon31	c.G7061A	p.R2354H	.	.	.
ZNF804A	91752	broad.mit.edu	36	2	185511586	185511586	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194250	exon4	c.C3218T	p.A1073V	.	.	.
DNAH7	56171	broad.mit.edu	36	2	196348861	196348861	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018897	exon60	c.A11156T	p.D3719V	.	.	.
SATB2	23314	broad.mit.edu	36	2	199845483	199845483	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172509	exon11	c.T1898C	p.I633T	.	.	.
SATB2	23314	broad.mit.edu	36	2	199941601	199941601	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172509	exon6	c.A672G	p.R224R	.	.	.
CD28	940	broad.mit.edu	36	2	204307863	204307863	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006139	exon4	c.G646A	p.A216T	.	.	.
DYTN	391475	broad.mit.edu	36	2	207267742	207267742	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001093730	exon8	c.G824A	p.C275Y	.	.	.
CPS1	1373	broad.mit.edu	36	2	211179738	211179738	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122634	exon8	c.A667G	p.N223D	.	.	.
ABCA12	26154	broad.mit.edu	36	2	215529727	215529727	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173076	exon42	c.A6138G	p.V2046V	.	.	.
FN1	2335	broad.mit.edu	36	2	215952118	215952118	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_212476	exon32	c.G5059A	p.V1687M	.	.	.
XRCC5	7520	broad.mit.edu	36	2	216695170	216695170	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021141	exon6	c.T632C	p.V211A	.	.	.
GLB1L	79411	broad.mit.edu	36	2	219812158	219812158	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024506	exon11	c.G962A	p.R321H	.	.	.
SPEG	10290	broad.mit.edu	36	2	220017891	220017891	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005876	exon3	c.G579A	p.T193T	.	.	.
OBSL1	23363	broad.mit.edu	36	2	220141148	220141148	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001173431	exon2	c.G1155A	p.K385K	.	.	.
EPHA4	2043	broad.mit.edu	36	2	222019125	222019125	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004438	exon9	c.C1736T	p.A579V	.	.	.
MRPL44	65080	broad.mit.edu	36	2	224530531	224530531	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022915	exon1	c.A98G	p.K33R	.	.	.
SERPINE2	5270	broad.mit.edu	36	2	224557831	224557831	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136530	exon5	c.G802A	p.A268T	.	.	.
WDR69	164781	broad.mit.edu	36	2	228477963	228477963	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178821	exon8	c.T723C	p.H241H	.	.	.
B3GNT7	93010	broad.mit.edu	36	2	231970702	231970702	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145236	exon2	c.C28T	p.R10W	.	.	.
DGKD	8527	broad.mit.edu	36	2	234025378	234025378	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152879	exon18	c.C2197T	p.P733S	.	.	.
HJURP	55355	broad.mit.edu	36	2	234423165	234423165	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018410	exon4	c.G320A	p.R107H	.	.	.
TRPM8	79054	broad.mit.edu	36	2	234536670	234536670	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024080	exon13	c.G1659A	p.V553V	.	.	.
RBM44	375316	broad.mit.edu	36	2	238390608	238390608	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080504	exon3	c.A310G	p.T104A	.	.	.
UBE2F	140739	broad.mit.edu	36	2	238561358	238561358	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080678	exon3	c.G133A	p.E45K	.	.	.
KIF1A	547	broad.mit.edu	36	2	241385779	241385779	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004321	exon2	c.C64T	p.R22C	.	.	.
IFT172	26160	broad.mit.edu	36	2	27547383	27547383	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015662	exon16	c.C1608T	p.D536D	.	.	.
BIRC6	57448	broad.mit.edu	36	2	32541855	32541855	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016252	exon24	c.G4843A	p.V1615I	.	.	.
BIRC6	57448	broad.mit.edu	36	2	32653730	32653730	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016252	exon66	c.T13148C	p.L4383P	.	.	.
FAM98A	25940	broad.mit.edu	36	2	33663514	33663514	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015475	exon8	c.C1390T	p.R464X	.	.	.
VIT	5212	broad.mit.edu	36	2	36839643	36839643	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177972	exon6	c.A437G	p.Y146C	.	.	.
STON1-GTF2A1L	286749	broad.mit.edu	36	2	48727440	48727440	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006872	exon6	c.C733T	p.P245S	.	.	.
GPR75	10936	broad.mit.edu	36	2	53934934	53934934	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006794	exon2	c.C464T	p.T155M	.	.	.
BCL11A	53335	broad.mit.edu	36	2	60542112	60542112	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022893	exon4	c.C1439T	p.P480L	.	.	.
PEX13	5194	broad.mit.edu	36	2	61126435	61126435	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002618	exon3	c.A858G	p.V286V	.	.	.
APLF	200558	broad.mit.edu	36	2	68570886	68570886	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173545	exon2	c.C157T	p.R53X	.	.	.
ADD2	119	broad.mit.edu	36	2	70773081	70773081	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001185054	exon7	c.C667T	p.R223C	.	.	.
ALMS1	7840	broad.mit.edu	36	2	73505275	73505275	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015120	exon5	c.C974T	p.S325L	.	.	.
LOXL3	84695	broad.mit.edu	36	2	74617456	74617456	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032603	exon5	c.A800T	p.D267V	.	.	.
TACR1	6869	broad.mit.edu	36	2	75279389	75279389	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015727	exon1	c.C180T	p.H60H	.	.	.
CTNNA2	1496	broad.mit.edu	36	2	80670048	80670048	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004389	exon15	c.G2119A	p.D707N	.	.	.
TCF7L1	83439	broad.mit.edu	36	2	85385979	85385979	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031283	exon8	c.G931A	p.V311I	.	.	.
KIDINS220	57498	broad.mit.edu	36	2	8805483	8805483	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020738	exon25	c.T3513A	p.D1171E	.	.	.
ITGB1BP1	9270	broad.mit.edu	36	2	9476227	9476227	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022334	exon2	c.C51T	p.S17S	.	.	.
PROM2	150696	broad.mit.edu	36	2	95304966	95304966	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144707	exon2	c.C275T	p.A92V	.	.	.
SNRNP200	23020	broad.mit.edu	36	2	96307785	96307785	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014014	exon39	c.C5527T	p.R1843X	.	.	.
AFF3	3899	broad.mit.edu	36	2	99551800	99551800	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001025108	exon18	c.T3003C	p.S1001S	.	.	.
RRM2	6241	broad.mit.edu	36	2	10180981	10180981	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001165931	exon3	c.371delC	p.A124fs	.	.	.
TBC1D23	55773	broad.mit.edu	36	3	101492129	101492129	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199198	exon5	c.G494A	p.G165E	.	.	.
ALCAM	214	broad.mit.edu	36	3	106735208	106735208	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001627	exon5	c.A531G	p.L177L	.	.	.
HHLA2	11148	broad.mit.edu	36	3	109555070	109555070	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007072	exon4	c.C171T	p.S57S	.	.	.
CD200R1	131450	broad.mit.edu	36	3	114130525	114130525	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170780	exon4	c.G528A	p.A176A	.	.	.
SPICE1	152185	broad.mit.edu	36	3	114669718	114669718	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144718	exon10	c.G1113A	p.S371S	.	.	.
ATP6V1A	523	broad.mit.edu	36	3	114999864	114999864	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001690	exon12	c.C1375T	p.R459C	.	.	.
GPR156	165829	broad.mit.edu	36	3	121369207	121369207	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001168271	exon9	c.C1795T	p.R599W	.	.	.
ILDR1	286676	broad.mit.edu	36	3	123194713	123194713	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175924	exon6	c.A1441G	p.K481E	.	.	.
ILDR1	286676	broad.mit.edu	36	3	123208694	123208694	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175924	exon2	c.C63G	p.C21W	.	.	.
SLC41A3	54946	broad.mit.edu	36	3	127208703	127208703	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008485	exon11	c.C1310T	p.A437V	.	.	.
IQSEC1	9922	broad.mit.edu	36	3	12941208	12941208	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014869	exon4	c.C1645T	p.R549C	.	.	.
KIAA1257	57501	broad.mit.edu	36	3	130172872	130172872	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020741	exon8	c.C1116T	p.P372P	.	.	.
TMCC1	23023	broad.mit.edu	36	3	131029539	131029539	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017395	exon3	c.C373T	p.R125W	.	.	.
ASTE1	28990	broad.mit.edu	36	3	132217694	132217694	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014065	exon5	c.G1693T	p.E565X	.	.	.
FBLN2	2199	broad.mit.edu	36	3	13644384	13644384	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001998	exon10	c.G2343A	p.V781V	.	.	.
MSL2	55167	broad.mit.edu	36	3	137396564	137396564	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018133	exon1	c.T82C	p.F28L	.	.	.
CEP70	80321	broad.mit.edu	36	3	139701706	139701706	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024491	exon16	c.A1588G	p.R530G	.	.	.
ZBTB38	253461	broad.mit.edu	36	3	142645452	142645452	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080412	exon8	c.C1532T	p.T511M	.	.	.
ATR	545	broad.mit.edu	36	3	143704936	143704936	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184	exon30	c.T5246C	p.L1749P	.	.	.
KCNAB1	7881	broad.mit.edu	36	3	157492481	157492481	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172159	exon1	c.A91G	p.N31D	.	.	.
KCNAB1	7881	broad.mit.edu	36	3	157714889	157714889	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172159	exon9	c.C647T	p.A216V	.	.	.
SI	6476	broad.mit.edu	36	3	166243549	166243549	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001041	exon17	c.G1996A	p.G666R	.	.	.
BCHE	590	broad.mit.edu	36	3	167030107	167030107	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000055	exon2	c.T1409G	p.I470S	.	.	.
LAMP3	27074	broad.mit.edu	36	3	184354809	184354809	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014398	exon2	c.A114G	p.Q38Q	.	.	.
YEATS2	55689	broad.mit.edu	36	3	184991438	184991438	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018023	exon21	c.A3073G	p.I1025V	.	.	.
EIF2B5	8893	broad.mit.edu	36	3	185340592	185340592	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003907	exon6	c.T796C	p.Y266H	.	.	.
ABCF3	55324	broad.mit.edu	36	3	185391671	185391671	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018358	exon16	c.C1503T	p.Y501Y	.	.	.
MAP3K13	9175	broad.mit.edu	36	3	186673561	186673561	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004721	exon11	c.G1748A	p.R583Q	.	.	.
FGF12	2257	broad.mit.edu	36	3	193344594	193344594	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004113	exon6	c.A444G	p.E148E	.	.	.
ATP13A4	84239	broad.mit.edu	36	3	194654600	194654600	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032279	exon17	c.G2011A	p.A671T	.	.	.
CNTN4	152330	broad.mit.edu	36	3	2752907	2752907	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175607	exon4	c.A64G	p.T22A	.	.	.
EOMES	8320	broad.mit.edu	36	3	27736719	27736719	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005442	exon2	c.G983A	p.R328H	.	.	.
CNOT10	25904	broad.mit.edu	36	3	32744192	32744192	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015442	exon10	c.T1041C	p.C347C	.	.	.
TMPPE	643853	broad.mit.edu	36	3	33110661	33110661	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039770	exon2	c.G31A	p.A11T	.	.	.
FBXL2	25827	broad.mit.edu	36	3	33391894	33391894	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171713	exon9	c.T564C	p.G188G	.	.	.
LRRFIP2	9209	broad.mit.edu	36	3	37091578	37091578	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017724	exon8	c.C544T	p.L182L	.	.	.
CTDSPL	10217	broad.mit.edu	36	3	37984366	37984366	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005808	exon4	c.A382G	p.T128A	.	.	.
SCN5A	6331	broad.mit.edu	36	3	38570862	38570862	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099405	exon26	c.T4671C	p.C1557C	.	.	.
CSRNP1	64651	broad.mit.edu	36	3	39163125	39163125	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033027	exon2	c.C53T	p.S18L	.	.	.
ULK4	54986	broad.mit.edu	36	3	41927855	41927855	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017886	exon11	c.G1043T	p.S348I	.	.	.
SLC6A20	54716	broad.mit.edu	36	3	45787861	45787861	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022405	exon5	c.G676A	p.A226T	.	.	.
FYCO1	79443	broad.mit.edu	36	3	45940174	45940174	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024513	exon17	c.A4339G	p.I1447V	.	.	.
PTH1R	5745	broad.mit.edu	36	3	46917558	46917558	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184744	exon10	c.G1028T	p.R343I	.	.	.
ITPR1	3708	broad.mit.edu	36	3	4708007	4708007	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099952	exon32	c.C3981T	p.C1327C	.	.	.
CDHR4	389118	broad.mit.edu	36	3	49811267	49811267	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007540	exon4	c.C491T	p.A164V	.	.	.
RBM6	10180	broad.mit.edu	36	3	50074543	50074543	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005777	exon15	c.A2584G	p.R862G	.	.	.
RBM5	10181	broad.mit.edu	36	3	50106252	50106252	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005778	exon4	c.C279T	p.D93D	.	.	.
ACY1	95	broad.mit.edu	36	3	51996389	51996389	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198896	exon9	c.A516G	p.K172K	.	.	.
DNAH1	25981	broad.mit.edu	36	3	52367698	52367698	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015512	exon25	c.T4171C	p.S1391P	.	.	.
PBRM1	55193	broad.mit.edu	36	3	52687620	52687620	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018313	exon3	c.C172T	p.R58X	.	.	.
ITIH4	3700	broad.mit.edu	36	3	52828523	52828523	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002218	exon17	c.G2003T	p.R668M	.	.	.
IL17RB	55540	broad.mit.edu	36	3	53858752	53858752	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018725	exon3	c.A116G	p.D39G	.	.	.
LRTM1	57408	broad.mit.edu	36	3	54933946	54933946	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020678	exon2	c.G344T	p.S115I	.	.	.
APPL1	26060	broad.mit.edu	36	3	57244713	57244713	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012096	exon2	c.A134G	p.H45R	.	.	.
PDZRN3	23024	broad.mit.edu	36	3	73515304	73515304	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015009	exon10	c.G3103A	p.D1035N	.	.	.
ROBO2	6092	broad.mit.edu	36	3	77230151	77230151	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128929	exon1	c.G299C	p.S100T	.	.	.
EPHA3	2042	broad.mit.edu	36	3	89342304	89342304	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005233	exon3	c.C758A	p.P253H	.	.	.
EPHA6	285220	broad.mit.edu	36	3	98189423	98189423	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080448	exon3	c.G1010A	p.R337H	.	.	.
TTLL3	26140	broad.mit.edu	36	3	9843782	9843782	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001025930	exon9	c.C1405T	p.R469W	.	.	.
EPHA6	285220	broad.mit.edu	36	3	98950164	98950164	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080448	exon18	c.C3322T	p.R1108X	.	.	.
ZNF662	389114	broad.mit.edu	36	3	42925385	42925389	+	Frame_Shift_Del	DEL	CCCCA	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	CCCCA	CCCCA	CCCCA	-	CCCCA	-	Unknown	Valid	Germline	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134656	exon3	c.311_315del	p.104_105del	.	.	.
ERC2	26059	broad.mit.edu	36	3	55743953	55743953	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015576	exon14	c.2592delA	p.K864fs	.	.	.
DNAH12	201625	broad.mit.edu	36	3	57503572	57503572	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178504	exon2	c.66delC	p.P22fs	.	.	.
PCDH7	5099	broad.mit.edu	36	4	30334330	30334331	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001173523	exon1	c.2188_2189insT	p.L730fs	.	.	.
MTTP	4547	broad.mit.edu	36	4	100751526	100751526	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000253	exon15	c.G1882A	p.A628T	.	.	.
NFKB1	4790	broad.mit.edu	36	4	103752727	103752727	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001165412	exon22	c.C2507T	p.A836V	.	.	.
LEF1	51176	broad.mit.edu	36	4	109220197	109220197	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166119	exon6	c.G457A	p.G153S	.	.	.
SEC24B	10427	broad.mit.edu	36	4	110650653	110650653	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006323	exon8	c.G1713T	p.Q571H	.	.	.
SEC24D	9871	broad.mit.edu	36	4	119893430	119893430	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014822	exon12	c.C1483T	p.H495Y	.	.	.
KIAA1109	84162	broad.mit.edu	36	4	123485059	123485059	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015312	exon72	c.A12626T	p.K4209I	.	.	.
KIAA1109	84162	broad.mit.edu	36	4	123488330	123488330	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015312	exon74	c.T13075A	p.S4359T	.	.	.
ANKRD50	57182	broad.mit.edu	36	4	125812344	125812344	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001167882	exon3	c.G1001A	p.R334H	.	.	.
FAT4	79633	broad.mit.edu	36	4	126592497	126592497	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024582	exon9	c.A10876G	p.N3626D	.	.	.
C4orf29	80167	broad.mit.edu	36	4	129160698	129160698	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039717	exon9	c.C623T	p.A208V	.	.	.
BOD1L	259282	broad.mit.edu	36	4	13213399	13213399	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_148894	exon10	c.A4223G	p.D1408G	.	.	.
ELMOD2	255520	broad.mit.edu	36	4	141680794	141680794	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153702	exon6	c.C422T	p.T141M	.	.	.
TBC1D9	23158	broad.mit.edu	36	4	141809548	141809548	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015130	exon9	c.C1561T	p.R521C	.	.	.
HHIP	64399	broad.mit.edu	36	4	145787416	145787416	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022475	exon1	c.C139T	p.R47C	.	.	.
EDNRA	1909	broad.mit.edu	36	4	148626563	148626563	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166055	exon2	c.G280T	p.G94X	.	.	.
NR3C2	4306	broad.mit.edu	36	4	149576927	149576927	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001166104	exon2	c.C536T	p.A179V	.	.	.
SH3D19	152503	broad.mit.edu	36	4	152268772	152268772	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009555	exon19	c.G2158T	p.A720S	.	.	.
SH3D19	152503	broad.mit.edu	36	4	152280398	152280398	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009555	exon14	c.G1504A	p.V502I	.	.	.
TLR2	7097	broad.mit.edu	36	4	154843858	154843858	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003264	exon3	c.T349G	p.S117A	.	.	.
DCHS2	54798	broad.mit.edu	36	4	155445734	155445734	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017639	exon16	c.T3995C	p.L1332P	.	.	.
FGG	2266	broad.mit.edu	36	4	155750352	155750352	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021870	exon6	c.T546C	p.I182I	.	.	.
RBM46	166863	broad.mit.edu	36	4	155939605	155939605	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144979	exon4	c.C841T	p.R281X	.	.	.
GUCY1A3	2982	broad.mit.edu	36	4	156854163	156854163	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130682	exon7	c.G1550T	p.C517F	.	.	.
TRIM60	166655	broad.mit.edu	36	4	166181843	166181843	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152620	exon3	c.G1169A	p.R390Q	.	.	.
SH3RF1	57630	broad.mit.edu	36	4	170294251	170294251	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020870	exon5	c.C861T	p.S287S	.	.	.
LETM1	3954	broad.mit.edu	36	4	1812946	1812946	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012318	exon3	c.G520A	p.D174N	.	.	.
MLF1IP	79682	broad.mit.edu	36	4	185874724	185874724	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024629	exon6	c.A439G	p.T147A	.	.	.
TLR3	7098	broad.mit.edu	36	4	187242250	187242250	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003265	exon4	c.A2416G	p.S806G	.	.	.
FAT1	2195	broad.mit.edu	36	4	187776868	187776868	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005245	exon10	c.T7866A	p.D2622E	.	.	.
FAT1	2195	broad.mit.edu	36	4	187776964	187776964	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005245	exon10	c.T7770G	p.N2590K	.	.	.
HTT	3064	broad.mit.edu	36	4	3101469	3101469	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002111	exon13	c.C1764G	p.N588K	.	.	.
ARAP2	116984	broad.mit.edu	36	4	35906693	35906693	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015230	exon2	c.C811T	p.R271C	.	.	.
RPL9	6133	broad.mit.edu	36	4	39134546	39134546	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000661	exon5	c.G266A	p.R89H	.	.	.
PDS5A	23244	broad.mit.edu	36	4	39582203	39582203	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100399	exon12	c.C1237T	p.R413X	.	.	.
APBB2	323	broad.mit.edu	36	4	40520419	40520419	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166050	exon16	c.A1928G	p.K643R	.	.	.
APBB2	323	broad.mit.edu	36	4	40641664	40641664	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166050	exon7	c.C1016T	p.T339M	.	.	.
GABRB1	2560	broad.mit.edu	36	4	47122590	47122590	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000812	exon9	c.T1223C	p.L408P	.	.	.
USP46	64854	broad.mit.edu	36	4	53188961	53188961	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022832	exon3	c.G244A	p.D82N	.	.	.
KDR	3791	broad.mit.edu	36	4	55641003	55641003	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002253	exon30	c.C3933T	p.S1311S	.	.	.
CEP135	9662	broad.mit.edu	36	4	56525261	56525261	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025009	exon7	c.A764T	p.D255V	.	.	.
EVC2	132884	broad.mit.edu	36	4	5733893	5733893	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166136	exon7	c.G625A	p.V209I	.	.	.
CENPC1	1060	broad.mit.edu	36	4	68067706	68067706	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001812	exon6	c.A441G	p.E147E	.	.	.
AMBN	258	broad.mit.edu	36	4	71499882	71499882	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016519	exon5	c.G224T	p.W75L	.	.	.
RASSF6	166824	broad.mit.edu	36	4	74678129	74678129	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177532	exon4	c.T190C	p.W64R	.	.	.
SH3TC1	54436	broad.mit.edu	36	4	8293492	8293492	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018986	exon18	c.C3921T	p.F1307F	.	.	.
TMEM150C	441027	broad.mit.edu	36	4	83642927	83642927	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080506	exon5	c.T212G	p.V71G	.	.	.
PKD2	5311	broad.mit.edu	36	4	89178494	89178494	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000297	exon4	c.A911G	p.D304G	.	.	.
FRYL	285527	broad.mit.edu	36	4	48224293	48224293	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015030	exon53	c.7275delT	p.F2425fs	.	.	.
FAM71B	153745	broad.mit.edu	36	5	156522894	156522895	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130899	exon2	c.960_961insA	p.N320fs	.	.	.
MARCH6	10299	broad.mit.edu	36	5	10483065	10483065	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005885	exon25	c.T2567A	p.V856D	.	.	.
NKD2	85409	broad.mit.edu	36	5	1087386	1087386	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033120	exon6	c.C367T	p.R123C	.	.	.
MCC	4163	broad.mit.edu	36	5	112465418	112465418	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001085377	exon8	c.C1315T	p.L439L	.	.	.
FAM170A	340069	broad.mit.edu	36	5	118997653	118997653	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182761	exon3	c.T311C	p.L104S	.	.	.
FTMT	94033	broad.mit.edu	36	5	121216010	121216010	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177478	exon1	c.C453T	p.D151D	.	.	.
SNX2	6643	broad.mit.edu	36	5	122163423	122163423	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003100	exon3	c.G364A	p.V122M	.	.	.
MARCH3	115123	broad.mit.edu	36	5	126241842	126241842	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178450	exon4	c.G537A	p.R179R	.	.	.
CDC23	8697	broad.mit.edu	36	5	137552613	137552613	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004661	exon16	c.C1747A	p.P583T	.	.	.
FAM53C	51307	broad.mit.edu	36	5	137710415	137710415	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135647	exon5	c.C1047A	p.S349S	.	.	.
PCDHA1	56147	broad.mit.edu	36	5	140146201	140146201	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031410	exon1	c.G142A	p.V48I	.	.	.
PCDHA2	56146	broad.mit.edu	36	5	140156930	140156930	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018905	exon1	c.G2197A	p.A733T	.	.	.
PCDHA9	9752	broad.mit.edu	36	5	140209351	140209351	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014005	exon1	c.G1087A	p.A363T	.	.	.
PCDHA13	56136	broad.mit.edu	36	5	140243392	140243392	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031865	exon1	c.C1355T	p.A452V	.	.	.
PCDHB2	56133	broad.mit.edu	36	5	140456857	140456857	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018936	exon1	c.A2299G	p.K767E	.	.	.
PCDHB3	56132	broad.mit.edu	36	5	140461938	140461938	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018937	exon1	c.C1521T	p.N507N	.	.	.
PCDHB6	56130	broad.mit.edu	36	5	140510624	140510624	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018939	exon1	c.G602A	p.R201H	.	.	.
PCDHGA3	56112	broad.mit.edu	36	5	140704101	140704101	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018916	exon1	c.T317A	p.I106N	.	.	.
FBXO38	81545	broad.mit.edu	36	5	147798151	147798151	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_205836	exon18	c.A2921C	p.D974A	.	.	.
RBM22	55696	broad.mit.edu	36	5	150055405	150055405	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018047	exon7	c.G602A	p.R201H	.	.	.
DCTN4	51164	broad.mit.edu	36	5	150090394	150090394	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135644	exon8	c.C655T	p.R219C	.	.	.
FAT2	2196	broad.mit.edu	36	5	150865675	150865675	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001447	exon23	c.A12694T	p.M4232L	.	.	.
FAT2	2196	broad.mit.edu	36	5	150902335	150902335	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001447	exon9	c.C8546T	p.A2849V	.	.	.
C5orf4	10826	broad.mit.edu	36	5	154183185	154183185	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032385	exon6	c.C527T	p.A176V	.	.	.
GEMIN5	25929	broad.mit.edu	36	5	154281135	154281135	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015465	exon10	c.A1423G	p.T475A	.	.	.
KIF4B	285643	broad.mit.edu	36	5	154376010	154376010	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099293	exon1	c.T2398C	p.F800L	.	.	.
CLINT1	9685	broad.mit.edu	36	5	157173797	157173797	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014666	exon4	c.G326A	p.R109Q	.	.	.
GABRG2	2566	broad.mit.edu	36	5	161501794	161501794	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198904	exon7	c.G816T	p.M272I	.	.	.
CCNG1	900	broad.mit.edu	36	5	162801660	162801660	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004060	exon5	c.T629C	p.L210S	.	.	.
ODZ2	57451	broad.mit.edu	36	5	167550063	167550063	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122679	exon14	c.C2686T	p.R896C	.	.	.
LCP2	3937	broad.mit.edu	36	5	169622313	169622313	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005565	exon13	c.A830T	p.E277V	.	.	.
SFXN1	94081	broad.mit.edu	36	5	174871100	174871100	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022754	exon5	c.G475A	p.V159I	.	.	.
UNC5A	90249	broad.mit.edu	36	5	176230120	176230120	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_133369	exon6	c.A865G	p.T289A	.	.	.
FGFR4	2264	broad.mit.edu	36	5	176455257	176455257	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_213647	exon13	c.C1748A	p.P583Q	.	.	.
NSD1	64324	broad.mit.edu	36	5	176653974	176653974	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022455	exon23	c.C6999A	p.P2333P	.	.	.
GRK6	2870	broad.mit.edu	36	5	176796015	176796015	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004105	exon13	c.C1282A	p.P428T	.	.	.
GRM6	2916	broad.mit.edu	36	5	178346539	178346539	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000843	exon7	c.G1406A	p.R469Q	.	.	.
ADAMTS12	81792	broad.mit.edu	36	5	33612170	33612170	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030955	exon19	c.G3718A	p.V1240I	.	.	.
RAI14	26064	broad.mit.edu	36	5	34860061	34860061	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145522	exon14	c.G2270A	p.R757Q	.	.	.
PDCD6	10016	broad.mit.edu	36	5	359743	359743	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013232	exon4	c.G235A	p.G79S	.	.	.
LMBRD2	92255	broad.mit.edu	36	5	36179160	36179160	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007527	exon2	c.G49A	p.A17T	.	.	.
C5orf42	65250	broad.mit.edu	36	5	37209728	37209728	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023073	exon32	c.A6057G	p.Q2019Q	.	.	.
WDR70	55100	broad.mit.edu	36	5	37552449	37552449	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018034	exon9	c.C917T	p.A306V	.	.	.
EGFLAM	133584	broad.mit.edu	36	5	38487230	38487230	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182798	exon14	c.G1898A	p.G633D	.	.	.
RICTOR	253260	broad.mit.edu	36	5	39017858	39017858	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152756	exon8	c.A621G	p.G207G	.	.	.
RICTOR	253260	broad.mit.edu	36	5	39038521	39038521	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152756	exon5	c.C265T	p.R89W	.	.	.
C9	735	broad.mit.edu	36	5	39351679	39351679	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001737	exon6	c.C825T	p.S275S	.	.	.
CARD6	84674	broad.mit.edu	36	5	40888621	40888621	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032587	exon3	c.C1430A	p.P477H	.	.	.
ISL1	3670	broad.mit.edu	36	5	50719116	50719116	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002202	exon3	c.G254A	p.G85D	.	.	.
ESM1	11082	broad.mit.edu	36	5	54316921	54316921	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007036	exon1	c.G182A	p.R61Q	.	.	.
RAB3C	115827	broad.mit.edu	36	5	58057670	58057670	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138453	exon3	c.A337G	p.T113A	.	.	.
HTR1A	3350	broad.mit.edu	36	5	63293045	63293045	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000524	exon1	c.G258A	p.S86S	.	.	.
MAST4	375449	broad.mit.edu	36	5	66496871	66496871	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015183	exon28	c.G5541T	p.W1847C	.	.	.
CCDC125	202243	broad.mit.edu	36	5	68623910	68623910	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176816	exon9	c.C960T	p.Y320Y	.	.	.
MAP1B	4131	broad.mit.edu	36	5	71528317	71528317	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005909	exon5	c.T3379A	p.S1127T	.	.	.
CMYA5	202333	broad.mit.edu	36	5	79070328	79070328	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153610	exon2	c.C9984T	p.D3328D	.	.	.
VCAN	1462	broad.mit.edu	36	5	82843797	82843797	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164097	exon6	c.G868A	p.G290S	.	.	.
ZDHHC11	79844	broad.mit.edu	36	5	903639	903639	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024786	exon1	c.C79T	p.R27C	.	.	.
GPR98	84059	broad.mit.edu	36	5	90484886	90484886	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032119	exon89	c.G18717A	p.P6239P	.	.	.
C5orf36	285600	broad.mit.edu	36	5	93885529	93885529	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145678	exon4	c.C162T	p.S54S	.	.	.
TTC37	9652	broad.mit.edu	36	5	94865347	94865347	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014639	exon31	c.T3144C	p.L1048L	.	.	.
RGMB	285704	broad.mit.edu	36	5	98157233	98157233	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012761	exon5	c.C1313T	p.A438V	.	.	.
NIPBL	25836	broad.mit.edu	36	5	37043891	37043891	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015384	exon19	c.4264delT	p.F1422fs	.	.	.
CWC27	10283	broad.mit.edu	36	5	64135890	64135890	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005869	exon10	c.859delA	p.K287fs	.	.	.
MAST4	375449	broad.mit.edu	36	5	66496395	66496395	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015183	exon28	c.5065delC	p.P1689fs	.	.	.
C6orf103	79747	broad.mit.edu	36	6	147178019	147178020	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024694	exon36	c.4977_4978insA	p.Q1659fs	.	.	.
ASCC3	10973	broad.mit.edu	36	6	101272815	101272815	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006828	exon12	c.G1936A	p.G646R	.	.	.
PDSS2	57107	broad.mit.edu	36	6	107582619	107582619	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020381	exon8	c.G1097A	p.R366H	.	.	.
HS3ST5	222537	broad.mit.edu	36	6	114485979	114485979	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153612	exon2	c.G176A	p.R59H	.	.	.
TRDN	10345	broad.mit.edu	36	6	123630581	123630581	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006073	exon32	c.C1753T	p.R585X	.	.	.
LAMA2	3908	broad.mit.edu	36	6	129678693	129678693	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079823	exon26	c.C3829T	p.R1277X	.	.	.
TNFAIP3	7128	broad.mit.edu	36	6	138241549	138241549	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006290	exon7	c.C1274T	p.P425L	.	.	.
PLAGL1	5325	broad.mit.edu	36	6	144305062	144305062	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080955	exon6	c.G428A	p.R143H	.	.	.
UTRN	7402	broad.mit.edu	36	6	145160671	145160671	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007124	exon63	c.A9097G	p.I3033V	.	.	.
MTHFD1L	25902	broad.mit.edu	36	6	151311952	151311952	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015440	exon16	c.G1716A	p.T572T	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152693053	152693053	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033071	exon77	c.C14247T	p.S4749S	.	.	.
RBM16	22828	broad.mit.edu	36	6	155193854	155193854	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014892	exon19	c.C2247T	p.S749S	.	.	.
SYNJ2	8871	broad.mit.edu	36	6	158410631	158410631	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003898	exon14	c.G1878A	p.S626S	.	.	.
TMEM181	57583	broad.mit.edu	36	6	158914498	158914498	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020823	exon2	c.G478A	p.V160I	.	.	.
TCP1	6950	broad.mit.edu	36	6	160130481	160130481	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030752	exon1	c.C10T	p.P4S	.	.	.
MRPL18	29074	broad.mit.edu	36	6	160132070	160132070	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014161	exon2	c.G161A	p.R54Q	.	.	.
MRPL18	29074	broad.mit.edu	36	6	160138509	160138509	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014161	exon3	c.A440G	p.Q147R	.	.	.
PLG	5340	broad.mit.edu	36	6	161059767	161059767	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000301	exon9	c.T1003C	p.C335R	.	.	.
RPS6KA2	6196	broad.mit.edu	36	6	166765905	166765905	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021135	exon15	c.C1396T	p.H466Y	.	.	.
MLLT4	4301	broad.mit.edu	36	6	168086937	168086937	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040000	exon24	c.C3151T	p.R1051C	.	.	.
THBS2	7058	broad.mit.edu	36	6	169376823	169376823	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003247	exon11	c.T1582C	p.Y528H	.	.	.
KDM1B	221656	broad.mit.edu	36	6	18271059	18271059	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153042	exon5	c.G230A	p.G77D	.	.	.
HIST1H2BD	3017	broad.mit.edu	36	6	26266561	26266561	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021063	exon1	c.T185A	p.I62N	.	.	.
HIST1H4E	8367	broad.mit.edu	36	6	26312927	26312927	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003545	exon1	c.A76G	p.N26D	.	.	.
HIST1H2BK	85236	broad.mit.edu	36	6	27222339	27222339	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080593	exon1	c.G218A	p.R73H	.	.	.
ZNF184	7738	broad.mit.edu	36	6	27527446	27527446	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007149	exon6	c.G1871A	p.R624Q	.	.	.
OR2J3	442186	broad.mit.edu	36	6	29187919	29187919	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005216	exon1	c.G273A	p.P91P	.	.	.
GABBR1	2550	broad.mit.edu	36	6	29680313	29680313	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021904	exon21	c.C2463T	p.N821N	.	.	.
RIPK1	8737	broad.mit.edu	36	6	3028541	3028541	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003804	exon4	c.A683G	p.Y228C	.	.	.
MDC1	9656	broad.mit.edu	36	6	30779006	30779006	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014641	exon12	c.C5719T	p.R1907W	.	.	.
VARS2	57176	broad.mit.edu	36	6	30997948	30997948	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001167733	exon19	c.G1463A	p.R488H	.	.	.
SLC44A4	80736	broad.mit.edu	36	6	31940428	31940428	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178044	exon19	c.A1865G	p.D622G	.	.	.
STK19	8859	broad.mit.edu	36	6	32056528	32056528	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004197	exon7	c.C1020T	p.H340H	.	.	.
COL11A2	1302	broad.mit.edu	36	6	33244309	33244309	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080681	exon52	c.G3667A	p.G1223R	.	.	.
PFDN6	10471	broad.mit.edu	36	6	33366205	33366205	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001185181	exon3	c.T260G	p.I87S	.	.	.
SYNGAP1	8831	broad.mit.edu	36	6	33518796	33518796	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006772	exon15	c.C2489A	p.P830Q	.	.	.
SCUBE3	222663	broad.mit.edu	36	6	35304464	35304464	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152753	exon3	c.C304T	p.H102Y	.	.	.
PNPLA1	285848	broad.mit.edu	36	6	36370001	36370001	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145717	exon4	c.C561A	p.A187A	.	.	.
C6orf89	221477	broad.mit.edu	36	6	36978117	36978117	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152734	exon3	c.T353G	p.I118S	.	.	.
GLP1R	2740	broad.mit.edu	36	6	39132190	39132190	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002062	exon2	c.C118T	p.R40X	.	.	.
KCNK17	89822	broad.mit.edu	36	6	39386701	39386701	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031460	exon2	c.C298T	p.R100C	.	.	.
GUCA1A	2978	broad.mit.edu	36	6	42249381	42249381	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000409	exon3	c.T52A	p.C18S	.	.	.
TTBK1	84630	broad.mit.edu	36	6	43359089	43359089	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032538	exon14	c.A2633G	p.Q878R	.	.	.
TCTE1	202500	broad.mit.edu	36	6	44355968	44355968	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182539	exon5	c.C1434T	p.R478R	.	.	.
RUNX2	860	broad.mit.edu	36	6	45588041	45588041	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004348	exon5	c.T898C	p.S300P	.	.	.
GPR116	221395	broad.mit.edu	36	6	46933900	46933900	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098518	exon17	c.T3699G	p.G1233G	.	.	.
TNFRSF21	27242	broad.mit.edu	36	6	47310522	47310522	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014452	exon5	c.C1581T	p.N527N	.	.	.
GPR115	221393	broad.mit.edu	36	6	47790255	47790255	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153838	exon6	c.C1315T	p.R439C	.	.	.
BEND6	221336	broad.mit.edu	36	6	56990013	56990013	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152731	exon5	c.A569G	p.Q190R	.	.	.
DSP	1832	broad.mit.edu	36	6	7526257	7526257	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004415	exon23	c.T4835C	p.I1612T	.	.	.
DSP	1832	broad.mit.edu	36	6	7530529	7530529	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008844	exon24	c.G6238A	p.V2080M	.	.	.
ME1	4199	broad.mit.edu	36	6	84112756	84112756	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002395	exon5	c.A455T	p.D152V	.	.	.
ZNF292	23036	broad.mit.edu	36	6	88022204	88022204	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015021	exon8	c.G2138A	p.R713H	.	.	.
UBE2J1	51465	broad.mit.edu	36	6	90108846	90108846	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016021	exon3	c.C153T	p.S51S	.	.	.
FNDC1	84624	broad.mit.edu	36	6	159575266	159575266	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032532	exon11	c.3732delC	p.L1244fs	.	.	.
TRERF1	55809	broad.mit.edu	36	6	42339217	42339222	+	In_Frame_Del	DEL	GGCGGA	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	GGCGGA	GGCGGA	GGCGGA	-	GGCGGA	GGCGGA	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033502	exon8	c.1698_1703del	p.566_568del	.	.	.
MGC26647	219557	broad.mit.edu	36	7	88261763	88261764	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152706	exon2	c.430_431insT	p.M144fs	.	.	.
GIGYF1	64599	broad.mit.edu	36	7	100119152	100119152	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022574	exon17	c.C2009T	p.S670L	.	.	.
EMID2	136227	broad.mit.edu	36	7	100987482	100987482	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133457	exon13	c.G1271A	p.G424D	.	.	.
SRPK2	6733	broad.mit.edu	36	7	104545554	104545554	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182691	exon15	c.C2034T	p.G678G	.	.	.
PIK3CG	5294	broad.mit.edu	36	7	106296197	106296197	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002649	exon2	c.A955T	p.R319W	.	.	.
LAMB1	3912	broad.mit.edu	36	7	107400676	107400676	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002291	exon13	c.A1559G	p.N520S	.	.	.
CFTR	1080	broad.mit.edu	36	7	117030999	117030999	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000492	exon17	c.G2835A	p.S945S	.	.	.
LMOD2	442721	broad.mit.edu	36	7	123089632	123089632	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207163	exon2	c.C756T	p.A252A	.	.	.
CCDC136	64753	broad.mit.edu	36	7	128239336	128239336	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022742	exon13	c.C2275T	p.R759C	.	.	.
FLNC	2318	broad.mit.edu	36	7	128274129	128274129	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001458	exon24	c.G4222T	p.E1408X	.	.	.
PODXL	5420	broad.mit.edu	36	7	130846675	130846675	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001018111	exon2	c.T158C	p.V53A	.	.	.
CALD1	800	broad.mit.edu	36	7	134268357	134268357	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033157	exon5	c.C297T	p.R99R	.	.	.
C7orf49	78996	broad.mit.edu	36	7	134501993	134501993	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024033	exon4	c.G384A	p.P128P	.	.	.
TRIM24	8805	broad.mit.edu	36	7	137911692	137911692	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003852	exon13	c.A1947G	p.I649M	.	.	.
HIPK2	28996	broad.mit.edu	36	7	138919163	138919163	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022740	exon13	c.G2905A	p.V969M	.	.	.
TBXAS1	6916	broad.mit.edu	36	7	139301805	139301805	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001061	exon7	c.G621T	p.E207D	.	.	.
MKRN1	23608	broad.mit.edu	36	7	139800899	139800899	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013446	exon8	c.G1336A	p.E446K	.	.	.
WEE2	494551	broad.mit.edu	36	7	141055213	141055213	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105558	exon1	c.C186T	p.N62N	.	.	.
MGAM	8972	broad.mit.edu	36	7	141409845	141409845	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004668	exon36	c.C4335A	p.P1445P	.	.	.
INTS1	26173	broad.mit.edu	36	7	1499213	1499213	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080453	exon16	c.G2124T	p.L708L	.	.	.
GIMAP5	55340	broad.mit.edu	36	7	150070890	150070890	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199577	exon6	c.C1342T	p.Q448X	.	.	.
SLC4A2	6522	broad.mit.edu	36	7	150396047	150396047	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001199694	exon7	c.C1078T	p.L360L	.	.	.
GALNT11	63917	broad.mit.edu	36	7	151446718	151446718	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022087	exon10	c.A1475G	p.K492R	.	.	.
MLL3	58508	broad.mit.edu	36	7	151548614	151548614	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170606	exon23	c.C3639T	p.S1213S	.	.	.
PAXIP1	22976	broad.mit.edu	36	7	154391218	154391218	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007349	exon7	c.G1626C	p.Q542H	.	.	.
MNX1	3110	broad.mit.edu	36	7	156491212	156491212	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001165255	exon3	c.C333T	p.G111G	.	.	.
UBE3C	9690	broad.mit.edu	36	7	156669436	156669436	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014671	exon9	c.C1095A	p.A365A	.	.	.
PTPRN2	5799	broad.mit.edu	36	7	157677932	157677932	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130843	exon5	c.G397A	p.V133I	.	.	.
NCAPG2	54892	broad.mit.edu	36	7	158150088	158150088	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017760	exon14	c.C1595T	p.P532L	.	.	.
DNAH11	8701	broad.mit.edu	36	7	21745766	21745766	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003777	exon48	c.G7886A	p.R2629H	.	.	.
GPNMB	10457	broad.mit.edu	36	7	23266272	23266272	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005340	exon5	c.C690T	p.Y230Y	.	.	.
EIF3B	8662	broad.mit.edu	36	7	2381591	2381591	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003751	exon14	c.C1931T	p.T644M	.	.	.
TXNDC3	51314	broad.mit.edu	36	7	37868195	37868195	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016616	exon7	c.C311T	p.P104L	.	.	.
TXNDC3	51314	broad.mit.edu	36	7	37890497	37890497	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016616	exon13	c.G1062A	p.S354S	.	.	.
AMPH	273	broad.mit.edu	36	7	38483045	38483045	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139316	exon6	c.G446A	p.R149H	.	.	.
SDK1	221935	broad.mit.edu	36	7	4120411	4120411	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152744	exon25	c.C3802T	p.R1268W	.	.	.
TNS3	64759	broad.mit.edu	36	7	47311027	47311027	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022748	exon21	c.C2750T	p.T917M	.	.	.
TNS3	64759	broad.mit.edu	36	7	47406916	47406916	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022748	exon14	c.G844A	p.A282T	.	.	.
FOXK1	221937	broad.mit.edu	36	7	4767264	4767264	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037165	exon8	c.G1740A	p.A580A	.	.	.
KIAA0415	9907	broad.mit.edu	36	7	4793885	4793885	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014855	exon11	c.C1406T	p.A469V	.	.	.
DDC	1644	broad.mit.edu	36	7	50534394	50534394	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000790	exon8	c.C822T	p.Y274Y	.	.	.
EGFR	1956	broad.mit.edu	36	7	55187768	55187768	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201282	exon6	c.C664T	p.R222C	 EGFR,central_nervous_system,brain,Substitution - Missense,0 	.	.
EGFR	1956	broad.mit.edu	36	7	55200531	55200531	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201282	exon15	c.C1787T	p.P596L	 EGFR,central_nervous_system,brain,Substitution - Missense,-2 	.	.
ELN	2006	broad.mit.edu	36	7	73119024	73119024	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081755	exon31	c.T2056C	p.L686L	.	.	.
LIMK1	3984	broad.mit.edu	36	7	73172893	73172893	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002314	exon14	c.G1612A	p.V538I	.	.	.
CLIP2	7461	broad.mit.edu	36	7	73428840	73428840	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003388	exon10	c.C2173T	p.R725C	.	.	.
PHTF2	57157	broad.mit.edu	36	7	77409968	77409968	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020432	exon13	c.C1774T	p.R592X	.	.	.
GNAI1	2770	broad.mit.edu	36	7	79678289	79678289	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002069	exon6	c.C659T	p.A220V	.	.	.
SEMA3D	223117	broad.mit.edu	36	7	84480041	84480041	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152754	exon15	c.C1761T	p.I587I	.	.	.
ABCB4	5244	broad.mit.edu	36	7	86894108	86894108	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018849	exon16	c.T1958A	p.M653K	.	.	.
ZNF804B	219578	broad.mit.edu	36	7	88801049	88801049	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181646	exon4	c.A817G	p.T273A	.	.	.
SAMD9	54809	broad.mit.edu	36	7	92570292	92570292	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193307	exon2	c.G3055A	p.D1019N	.	.	.
SAMD9L	219285	broad.mit.edu	36	7	92598681	92598681	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152703	exon5	c.A4540G	p.K1514E	.	.	.
SLC25A13	10165	broad.mit.edu	36	7	95588460	95588460	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014251	exon18	c.G2007T	p.K669N	.	.	.
LMTK2	22853	broad.mit.edu	36	7	97661396	97661396	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014916	exon11	c.C3683T	p.T1228M	.	.	.
TRRAP	8295	broad.mit.edu	36	7	98403076	98403076	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003496	exon49	c.C7256T	p.A2419V	.	.	.
TRRAP	8295	broad.mit.edu	36	7	98414423	98414423	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003496	exon56	c.G8519A	p.R2840Q	.	.	.
ZKSCAN5	23660	broad.mit.edu	36	7	98961917	98961917	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145102	exon6	c.G1318T	p.G440C	.	.	.
FAM200A	221786	broad.mit.edu	36	7	98983078	98983078	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145111	exon2	c.T889C	p.F297L	.	.	.
AP4M1	9179	broad.mit.edu	36	7	99541058	99541058	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004722	exon11	c.C889T	p.R297W	.	.	.
C7orf43	55262	broad.mit.edu	36	7	99592673	99592673	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018275	exon5	c.G825A	p.V275V	.	.	.
PLOD3	8985	broad.mit.edu	36	7	100642647	100642647	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001084	exon9	c.889delC	p.R297fs	.	.	.
STAG3L2	442582	broad.mit.edu	36	7	73938493	73938500	+	Frame_Shift_Del	DEL	AGAGCTCC	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	AGAGCTCC	AGAGCTCC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001025202	exon5	c.243_250del	p.81_84del	.	.	.
HPVC1	3262	broad.mit.edu	36	7	54236911	54236912	+	Frame_Shift_Del	DEL	AC	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	AC	AC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
STAR	6770	broad.mit.edu	36	8	38125368	38125369	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000349	exon2	c.126_127insG	p.G42fs	.	.	.
OSR2	116039	broad.mit.edu	36	8	100030398	100030398	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053001	exon2	c.G42A	p.P14P	.	.	.
PKHD1L1	93035	broad.mit.edu	36	8	110477451	110477451	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177531	exon11	c.T831G	p.P277P	.	.	.
PKHD1L1	93035	broad.mit.edu	36	8	110511431	110511431	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177531	exon27	c.G3218A	p.S1073N	.	.	.
ENPP2	5168	broad.mit.edu	36	8	120650718	120650718	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130863	exon22	c.G2066A	p.S689N	.	.	.
ADCY8	114	broad.mit.edu	36	8	131895633	131895633	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001115	exon14	c.A2777G	p.D926G	.	.	.
DLC1	10395	broad.mit.edu	36	8	13303474	13303474	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182643	exon3	c.C1049T	p.A350V	.	.	.
TG	7038	broad.mit.edu	36	8	133969921	133969921	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003235	exon10	c.G2687A	p.R896Q	.	.	.
SGCZ	137868	broad.mit.edu	36	8	14226045	14226045	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139167	exon3	c.C274T	p.R92X	.	.	.
FOXH1	8928	broad.mit.edu	36	8	145671808	145671808	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003923	exon1	c.A140T	p.Q47L	.	.	.
DLGAP2	9228	broad.mit.edu	36	8	1614177	1614177	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004745	exon9	c.G2439A	p.A813A	.	.	.
MTMR7	9108	broad.mit.edu	36	8	17201776	17201776	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004686	exon14	c.G1949A	p.R650Q	.	.	.
ARHGEF10	9639	broad.mit.edu	36	8	1795669	1795669	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014629	exon4	c.C393T	p.C131C	.	.	.
ARHGEF10	9639	broad.mit.edu	36	8	1892578	1892578	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014629	exon29	c.A3777G	p.S1259S	.	.	.
LOXL2	4017	broad.mit.edu	36	8	23281650	23281650	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002318	exon2	c.G160A	p.A54T	.	.	.
ADAM7	8756	broad.mit.edu	36	8	24402567	24402567	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003817	exon12	c.C1097A	p.P366H	.	.	.
ADRA1A	148	broad.mit.edu	36	8	26777665	26777665	+	Missense_Mutation	SNP	C	T	T	rs3730287	byCluster	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033302	exon1	c.G739A	p.G247R	.	.	.
ESCO2	157570	broad.mit.edu	36	8	27701365	27701365	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017420	exon6	c.T1058C	p.M353T	.	.	.
TEX15	56154	broad.mit.edu	36	8	30821338	30821338	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031271	exon1	c.G4738A	p.A1580T	.	.	.
PRKDC	5591	broad.mit.edu	36	8	48869542	48869542	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081640	exon74	c.C10531T	p.P3511S	.	.	.
PRKDC	5591	broad.mit.edu	36	8	48937536	48937536	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081640	exon43	c.A5869G	p.M1957V	.	.	.
PRKDC	5591	broad.mit.edu	36	8	48964182	48964182	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081640	exon33	c.C4225T	p.P1409S	.	.	.
TRAM1	23471	broad.mit.edu	36	8	71672788	71672788	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014294	exon4	c.C322T	p.R108X	.	.	.
XKR9	389668	broad.mit.edu	36	8	71808857	71808857	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001011720	exon5	c.T766A	p.C256S	.	.	.
RPL7	6129	broad.mit.edu	36	8	74367536	74367536	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000971	exon2	c.G65A	p.R22Q	.	.	.
HEY1	23462	broad.mit.edu	36	8	80840439	80840439	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012258	exon5	c.G454T	p.V152F	.	.	.
RIPK2	8767	broad.mit.edu	36	8	90851188	90851188	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003821	exon4	c.C535T	p.R179X	.	.	.
MCPH1	79648	broad.mit.edu	36	8	6290047	6290047	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024596	exon8	c.1396delA	p.K466fs	.	.	.
SLC26A7	115111	broad.mit.edu	36	8	92421923	92421923	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_134266	exon8	c.994delA	p.K332fs	.	.	.
NOL8	55035	broad.mit.edu	36	9	94103681	94103682	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017948	exon13	c.3148_3149insT	p.D1050_S1051delinsX	.	.	.
BAAT	570	broad.mit.edu	36	9	103173381	103173381	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001701	exon2	c.A127G	p.M43V	.	.	.
GRIN3A	116443	broad.mit.edu	36	9	103415626	103415626	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133445	exon6	c.C2619T	p.Y873Y	.	.	.
ABCA1	19	broad.mit.edu	36	9	106606782	106606782	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005502	exon32	c.G4505A	p.G1502E	.	.	.
FKTN	2218	broad.mit.edu	36	9	107437278	107437278	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079802	exon11	c.C1298T	p.T433M	.	.	.
ZNF462	58499	broad.mit.edu	36	9	108730201	108730201	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021224	exon3	c.T4187C	p.M1396T	.	.	.
HSDL2	84263	broad.mit.edu	36	9	114206207	114206207	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032303	exon2	c.C129T	p.T43T	.	.	.
ASTN2	23245	broad.mit.edu	36	9	118778825	118778825	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014010	exon7	c.G1499A	p.R500H	.	.	.
STRBP	55342	broad.mit.edu	36	9	124981192	124981192	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171137	exon4	c.G97T	p.D33Y	.	.	.
NEK6	10783	broad.mit.edu	36	9	126152962	126152962	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166167	exon10	c.T911C	p.I304T	.	.	.
ANGPTL2	23452	broad.mit.edu	36	9	128893979	128893979	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012098	exon4	c.C1073T	p.T358M	.	.	.
LRSAM1	90678	broad.mit.edu	36	9	129256643	129256643	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005373	exon3	c.C16T	p.R6W	.	.	.
DNM1	1759	broad.mit.edu	36	9	130022414	130022414	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005336	exon6	c.G822A	p.T274T	.	.	.
GOLGA2	2801	broad.mit.edu	36	9	130060616	130060616	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004486	exon21	c.C2147A	p.A716E	.	.	.
WDR34	89891	broad.mit.edu	36	9	130442901	130442901	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052844	exon2	c.G325A	p.A109T	.	.	.
NUP188	23511	broad.mit.edu	36	9	130782774	130782774	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015354	exon14	c.A1338G	p.P446P	.	.	.
FAM73B	84895	broad.mit.edu	36	9	130844464	130844464	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032809	exon3	c.C157T	p.L53L	.	.	.
DDX31	64794	broad.mit.edu	36	9	134460211	134460211	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022779	exon20	c.G2419A	p.A807T	.	.	.
DDX31	64794	broad.mit.edu	36	9	134497262	134497262	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022779	exon15	c.C1793T	p.T598M	.	.	.
ADAMTSL2	9719	broad.mit.edu	36	9	135428801	135428801	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145320	exon18	c.G2608A	p.G870R	.	.	.
BRD3	8019	broad.mit.edu	36	9	135903191	135903191	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007371	exon6	c.G921A	p.K307K	.	.	.
COL5A1	1289	broad.mit.edu	36	9	136770180	136770180	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000093	exon10	c.G1429A	p.A477T	.	.	.
EHMT1	79813	broad.mit.edu	36	9	139768449	139768449	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024757	exon8	c.G1254A	p.S418S	.	.	.
ADAMTSL1	92949	broad.mit.edu	36	9	18765764	18765764	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040272	exon18	c.C2421T	p.G807G	.	.	.
PTPLAD2	401494	broad.mit.edu	36	9	21016666	21016666	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010915	exon3	c.G199A	p.V67I	.	.	.
ELAVL2	1993	broad.mit.edu	36	9	23695022	23695022	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171197	exon4	c.A381T	p.L127F	.	.	.
C9orf72	203228	broad.mit.edu	36	9	27546742	27546742	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018325	exon8	c.A908G	p.Y303C	.	.	.
TAF1L	138474	broad.mit.edu	36	9	32625566	32625566	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153809	exon1	c.C12T	p.G4G	.	.	.
CHMP5	51510	broad.mit.edu	36	9	33257862	33257862	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195536	exon3	c.G186A	p.K62K	.	.	.
MSMP	692094	broad.mit.edu	36	9	35743731	35743731	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001044264	exon2	c.G165T	p.L55L	.	.	.
SPAG8	26206	broad.mit.edu	36	9	35800935	35800935	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172312	exon3	c.C984T	p.S328S	.	.	.
ANKRD20A3	441425	broad.mit.edu	36	9	67558105	67558105	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012419	exon15	c.C1844G	p.A615G	.	.	.
KDM4C	23081	broad.mit.edu	36	9	7118095	7118095	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015061	exon19	c.C2640T	p.S880S	.	.	.
PRUNE2	158471	broad.mit.edu	36	9	78449509	78449509	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015225	exon12	c.C8694A	p.V2898V	.	.	.
VPS13A	23230	broad.mit.edu	36	9	79163174	79163174	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001018037	exon56	c.G7918T	p.A2640S	.	.	.
TLE4	7091	broad.mit.edu	36	9	81513414	81513414	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007005	exon13	c.C1156T	p.L386L	.	.	.
PTPRD	5789	broad.mit.edu	36	9	8511489	8511489	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040712	exon8	c.G740A	p.G247D	.	.	.
DAPK1	1612	broad.mit.edu	36	9	89486298	89486298	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004938	exon20	c.C2161T	p.P721S	.	.	.
C9orf79	286234	broad.mit.edu	36	9	89690303	89690303	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178828	exon4	c.G1081A	p.V361M	.	.	.
ROR2	4920	broad.mit.edu	36	9	93533148	93533148	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004560	exon7	c.C1048A	p.L350M	.	.	.
ECM2	1842	broad.mit.edu	36	9	94316794	94316794	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001393	exon4	c.G994A	p.A332T	.	.	.
ODZ1	10178	broad.mit.edu	36	X	123384107	123384108	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001163279	exon24	c.4164_4165insT	p.L1388fs	.	.	.
NRK	203447	broad.mit.edu	36	X	105080289	105080289	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198465	exon27	c.C4420T	p.L1474F	.	.	.
TSC22D3	1831	broad.mit.edu	36	X	106905138	106905138	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198057	exon1	c.C168T	p.V56V	.	.	.
COL4A5	1287	broad.mit.edu	36	X	107721034	107721034	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000495	exon20	c.C1256A	p.P419H	.	.	.
COL4A5	1287	broad.mit.edu	36	X	107822778	107822778	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033380	exon48	c.T4660C	p.X1554Q	.	.	.
COL4A5	1287	broad.mit.edu	36	X	107825223	107825223	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000495	exon50	c.G4874A	p.R1625H	.	.	.
IRS4	8471	broad.mit.edu	36	X	107864231	107864231	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003604	exon1	c.G2000A	p.C667Y	.	.	.
ACTRT1	139741	broad.mit.edu	36	X	127013798	127013798	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138289	exon1	c.A69G	p.A23A	.	.	.
BCORL1	63035	broad.mit.edu	36	X	128974698	128974698	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021946	exon3	c.A269G	p.D90G	.	.	.
ARHGAP36	158763	broad.mit.edu	36	X	130045509	130045509	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144967	exon4	c.C440T	p.A147V	.	.	.
GPR112	139378	broad.mit.edu	36	X	135259146	135259146	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153834	exon6	c.C5615G	p.S1872C	.	.	.
GPR112	139378	broad.mit.edu	36	X	135309762	135309762	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153834	exon21	c.G8396C	p.W2799S	.	.	.
VGLL1	51442	broad.mit.edu	36	X	135458549	135458549	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016267	exon3	c.C350T	p.P117L	.	.	.
ARHGEF6	9459	broad.mit.edu	36	X	135577858	135577858	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004840	exon22	c.C2327T	p.P776L	.	.	.
TCEANC	170082	broad.mit.edu	36	X	13591535	13591535	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152634	exon4	c.A1077T	p.Q359H	.	.	.
CXorf66	347487	broad.mit.edu	36	X	138866161	138866161	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013403	exon3	c.C646T	p.L216F	.	.	.
GLRA2	2742	broad.mit.edu	36	X	14658516	14658516	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001118885	exon10	c.C1347T	p.V449V	.	.	.
GABRA3	2556	broad.mit.edu	36	X	151283599	151283599	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000808	exon2	c.C100T	p.R34X	.	.	.
F8	2157	broad.mit.edu	36	X	153811719	153811719	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000132	exon14	c.A3540T	p.V1180V	.	.	.
SCML2	10389	broad.mit.edu	36	X	18252120	18252120	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006089	exon5	c.T177C	p.P59P	.	.	.
PDHA1	5160	broad.mit.edu	36	X	19281150	19281150	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001173454	exon6	c.G562T	p.G188X	.	.	.
PHEX	5251	broad.mit.edu	36	X	22154529	22154529	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000444	exon19	c.C1948A	p.L650M	.	.	.
PTCHD1	139411	broad.mit.edu	36	X	23320998	23320998	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173495	exon3	c.A1442G	p.H481R	.	.	.
MAGEB6	158809	broad.mit.edu	36	X	26122226	26122226	+	Silent	SNP	T	G	G	rs4997767	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173523	exon2	c.T342G	p.S114S	.	.	.
FAM47A	158724	broad.mit.edu	36	X	34058062	34058062	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203408	exon1	c.G2255A	p.G752D	.	.	.
FAM47B	170062	broad.mit.edu	36	X	34872723	34872723	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152631	exon1	c.C1854T	p.Y618Y	.	.	.
FAM47C	442444	broad.mit.edu	36	X	36938201	36938201	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013736	exon1	c.C1797A	p.P599P	.	.	.
TSPAN7	7102	broad.mit.edu	36	X	38431820	38431820	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004615	exon7	c.C705T	p.C235C	.	.	.
USP9X	8239	broad.mit.edu	36	X	40910111	40910111	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039590	exon16	c.G2028T	p.Q676H	.	.	.
CXorf36	79742	broad.mit.edu	36	X	44935963	44935963	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176819	exon2	c.C475T	p.R159C	.	.	.
RBM10	8241	broad.mit.edu	36	X	46924318	46924318	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005676	exon10	c.G997A	p.V333I	.	.	.
ZNF182	7569	broad.mit.edu	36	X	47721950	47721950	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006962	exon7	c.C480T	p.H160H	.	.	.
TBC1D25	4943	broad.mit.edu	36	X	48303514	48303514	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002536	exon6	c.G1274A	p.R425H	.	.	.
HDAC6	10013	broad.mit.edu	36	X	48559956	48559956	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006044	exon19	c.G1763A	p.R588H	.	.	.
MAGED1	9500	broad.mit.edu	36	X	51654538	51654538	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005333	exon3	c.C121T	p.P41S	.	.	.
FGD1	2245	broad.mit.edu	36	X	54513242	54513242	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004463	exon4	c.G1033A	p.E345K	.	.	.
P2RY4	5030	broad.mit.edu	36	X	69395523	69395523	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002565	exon1	c.G677A	p.R226H	.	.	.
PDZD11	51248	broad.mit.edu	36	X	69425078	69425078	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016484	exon3	c.A98G	p.H33R	.	.	.
TEX11	56159	broad.mit.edu	36	X	69861865	69861865	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001003811	exon13	c.C942T	p.G314G	.	.	.
MED12	9968	broad.mit.edu	36	X	70271683	70271683	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005120	exon36	c.G4880A	p.R1627H	.	.	.
STS	412	broad.mit.edu	36	X	7187635	7187635	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000351	exon5	c.G643A	p.V215I	.	.	.
NAP1L2	4674	broad.mit.edu	36	X	72350945	72350945	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021963	exon1	c.G109A	p.A37T	.	.	.
SHROOM4	57477	broad.mit.edu	36	X	50362374	50362374	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020717	exon7	c.3941delA	p.K1314fs	.	.	.
OPHN1	4983	broad.mit.edu	36	X	67435653	67435655	+	In_Frame_Del	DEL	AGA	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	AGA	AGA	AGA	-	AGA	AGA	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002547	exon3	c.163_165del	p.55_55del	.	.	.
SAT1	6303	broad.mit.edu	36	X	23712068	23712068	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
PPP1R2P9	80316	broad.mit.edu	36	X	42522116	42522116	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.