Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
ZNF22	7570	broad.mit.edu	36	10	44819903	44819904	+	Splice_Site	INS	-	AAAATT	AAAATT	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	-	-	-	AAAATT	-	AAAATT	Unknown	Valid	Germline	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	.	.	.	.	.	.	.
LRRC18	474354	broad.mit.edu	36	10	49791555	49791555	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G	G	A	G	A	Unknown	Valid	Germline	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001006939	exon1	c.C652T	p.R218W	.	.	.
BICC1	80114	broad.mit.edu	36	10	60232927	60232927	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001080512	exon15	c.C2100T	p.R700R	.	.	.
POLR3A	11128	broad.mit.edu	36	10	79423062	79423062	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007055	exon20	c.G2686A	p.D896N	.	.	.
IFIT5	24138	broad.mit.edu	36	10	91167876	91167876	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012420	exon2	c.C940T	p.L314L	.	.	.
IDE	3416	broad.mit.edu	36	10	94259882	94259882	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004969	exon6	c.A802T	p.T268S	.	.	.
TECTA	7007	broad.mit.edu	36	11	120505617	120505617	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005422	exon9	c.C2428T	p.R810X	.	.	.
OPCML	4978	broad.mit.edu	36	11	131904259	131904259	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001012393	exon4	c.C411A	p.D137E	.	.	.
SCGB2A2	4250	broad.mit.edu	36	11	61795026	61795026	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002411	exon2	c.C153T	p.D51D	.	.	.
ZNF215	7762	broad.mit.edu	36	11	6934084	6934084	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013250	exon7	c.G1300A	p.A434T	.	.	.
FAT3	120114	broad.mit.edu	36	11	92204479	92204479	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001008781	exon13	c.T9525A	p.G3175G	.	.	.
PRKAB1	5564	broad.mit.edu	36	12	118590506	118590507	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006253	exon1	c.74_75insG	p.S25fs	.	.	.
TRPV4	59341	broad.mit.edu	36	12	108714867	108714867	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021625	exon11	c.G1797A	p.T599T	.	.	.
NOS1	4842	broad.mit.edu	36	12	116252864	116252864	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000620	exon2	c.G394T	p.A132S	.	.	.
TMEM132D	121256	broad.mit.edu	36	12	128125328	128125328	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_133448	exon9	c.G2345A	p.R782Q	.	.	.
SLCO1B3	28234	broad.mit.edu	36	12	20921982	20921982	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_019844	exon9	c.A980T	p.Q327L	.	.	.
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35T	p.G12V	 KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.
RASSF8	11228	broad.mit.edu	36	12	26109217	26109217	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_007211	exon4	c.G623A	p.R208H	.	.	.
KRT3	3850	broad.mit.edu	36	12	51471353	51471353	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_057088	exon7	c.G1439A	p.R480Q	.	.	.
ARHGAP9	64333	broad.mit.edu	36	12	56155387	56155387	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080156	exon10	c.G954A	p.A318A	.	.	.
FAM90A1	55138	broad.mit.edu	36	12	8268639	8268639	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018088	exon4	c.C57A	p.T19T	.	.	.
MAB21L1	4081	broad.mit.edu	36	13	34948235	34948235	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005584	exon1	c.A41C	p.K14T	.	.	.
ARL11	115761	broad.mit.edu	36	13	49102800	49102800	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138450	exon2	c.C216A	p.A72A	.	.	.
UGGT2	55757	broad.mit.edu	36	13	95341133	95341133	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020121	exon25	c.T2942C	p.M981T	.	.	.
OR4K5	79317	broad.mit.edu	36	14	19458785	19458785	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001005483	exon1	c.C180A	p.Y60X	.	.	.
ESRRB	2103	broad.mit.edu	36	14	76027620	76027620	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004452	exon8	c.G865A	p.V289M	.	.	.
DICER1	23405	broad.mit.edu	36	14	94626680	94626680	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_177438	exon27	c.G5677T	p.V1893F	.	.	.
PML	5371	broad.mit.edu	36	15	72102249	72102249	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033238	exon3	c.G630T	p.P210P	.	.	.
SLCO3A1	28232	broad.mit.edu	36	15	90470375	90470375	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_013272	exon6	c.G1255C	p.G419R	.	.	.
CIITA	4261	broad.mit.edu	36	16	10905204	10905204	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000246	exon9	c.C888A	p.D296E	.	.	.
ACSM5	54988	broad.mit.edu	36	16	20348544	20348544	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017888	exon8	c.G1045T	p.A349S	.	.	.
PLEKHG4	25894	broad.mit.edu	36	16	65876778	65876778	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001129727	exon15	c.C2280T	p.P760P	.	.	.
IMP5	162540	broad.mit.edu	36	17	41278990	41278990	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_175882	exon1	c.C938T	p.P313L	.	.	.
SSTR2	6752	broad.mit.edu	36	17	68677380	68677380	+	Silent	SNP	C	G	G	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001050	exon2	c.C327G	p.P109P	.	.	.
TP53	7157	broad.mit.edu	36	17	7517846	7517846	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon8	c.C817T	p.R273C	 TP53,central_nervous_system,brain,Substitution - Missense,0 	.	.
EVPLL	645027	broad.mit.edu	36	17	18227362	18227362	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001145127	exon8	c.725delA	p.E242fs	.	.	.
SETBP1	26040	broad.mit.edu	36	18	40784997	40784997	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015559	exon4	c.C1694A	p.T565N	.	.	.
ALPK2	115701	broad.mit.edu	36	18	54333271	54333271	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_052947	exon10	c.C5963T	p.A1988V	.	.	.
MRPL4	51073	broad.mit.edu	36	19	10230175	10230175	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_146388	exon7	c.G639C	p.G213G	.	.	.
ZNF763	284390	broad.mit.edu	36	19	11948920	11948920	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001012753	exon2	c.C80T	p.S27L	.	.	.
SYCE2	256126	broad.mit.edu	36	19	12890109	12890109	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001105578	exon2	c.C58A	p.P20T	.	.	.
TMPRSS9	360200	broad.mit.edu	36	19	2359481	2359481	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182973	exon7	c.G868A	p.D290N	.	.	.
ZNF536	9745	broad.mit.edu	36	19	35626822	35626822	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014717	exon2	c.G513T	p.G171G	.	.	.
FCGBP	8857	broad.mit.edu	36	19	45060318	45060318	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003890	exon28	c.C12870T	p.P4290P	.	.	.
ZNF235	9310	broad.mit.edu	36	19	49483347	49483347	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004234	exon5	c.A2081T	p.Q694L	.	.	.
KIR3DL3	115653	broad.mit.edu	36	19	59933036	59933036	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153443	exon5	c.G921A	p.P307P	.	.	.
MUC16	94025	broad.mit.edu	36	19	8843253	8843253	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024690	exon70	c.C42022T	p.P14008S	.	.	.
COL5A3	50509	broad.mit.edu	36	19	9969786	9969786	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015719	exon9	c.A1150T	p.I384F	.	.	.
VCAM1	7412	broad.mit.edu	36	1	100958770	100958770	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_080682	exon2	c.C215T	p.T72M	.	.	.
SLC19A2	10560	broad.mit.edu	36	1	167713269	167713269	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006996	exon2	c.G555A	p.W185X	.	.	.
KCNT2	343450	broad.mit.edu	36	1	194494097	194494097	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198503	exon26	c.C3061A	p.L1021M	.	.	.
NFASC	23114	broad.mit.edu	36	1	203209027	203209027	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001160331	exon10	c.C1169A	p.S390X	.	.	.
OR14I1	401994	broad.mit.edu	36	1	246911987	246911987	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004734	exon1	c.G242A	p.R81H	.	.	.
EIF2C4	192670	broad.mit.edu	36	1	36089075	36089075	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017629	exon17	c.T2311G	p.W771G	.	.	.
NEGR1	257194	broad.mit.edu	36	1	71849332	71849332	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173808	exon5	c.G753A	p.P251P	.	.	.
CLCA2	9635	broad.mit.edu	36	1	86677314	86677314	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006536	exon7	c.G1140A	p.L380L	.	.	.
CLCA4	22802	broad.mit.edu	36	1	86816343	86816343	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012128	exon12	c.G2122A	p.G708R	.	.	.
GBP7	388646	broad.mit.edu	36	1	89390988	89390988	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_207398	exon4	c.G379A	p.V127I	.	.	.
FOXA2	3170	broad.mit.edu	36	20	22511317	22511317	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021784	exon2	c.T563A	p.L188Q	.	.	.
TOMM34	10953	broad.mit.edu	36	20	43017241	43017241	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006809	exon3	c.C262A	p.L88M	.	.	.
TPTE	7179	broad.mit.edu	36	21	9930742	9930742	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_199259	exon22	c.T1420A	p.C474S	.	.	.
SF3A1	10291	broad.mit.edu	36	22	29064826	29064826	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005409	exon11	c.C1500T	p.N500N	.	.	.
TRIOBP	11078	broad.mit.edu	36	22	36449750	36449750	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001039141	exon7	c.C1241A	p.A414D	.	.	.
TMEM163	81615	broad.mit.edu	36	2	135187318	135187318	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_030923	exon2	c.C244A	p.Q82K	.	.	.
GALNT13	114805	broad.mit.edu	36	2	155015207	155015207	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052917	exon13	c.C1569T	p.L523L	.	.	.
SCN9A	6335	broad.mit.edu	36	2	166842925	166842925	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002977	exon15	c.G2455T	p.G819X	.	.	.
TTN	7273	broad.mit.edu	36	2	179162990	179162990	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003319	exon132	c.C34512A	p.D11504E	.	.	.
APOB	338	broad.mit.edu	36	2	21082301	21082301	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000384	exon26	c.C10944T	p.V3648V	.	.	.
FN1	2335	broad.mit.edu	36	2	215938501	215938501	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_212476	exon41	c.C6573T	p.N2191N	.	.	.
RNF25	64320	broad.mit.edu	36	2	219237460	219237460	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022453	exon10	c.A844G	p.K282E	.	.	.
ALPP	250	broad.mit.edu	36	2	232954257	232954257	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001632	exon10	c.C1245T	p.Y415Y	.	.	.
PRR21	643905	broad.mit.edu	36	2	240630669	240630669	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080835	exon1	c.C404G	p.P135R	.	.	.
KHK	3795	broad.mit.edu	36	2	27175825	27175825	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006488	exon7	c.C687A	p.G229G	.	.	.
EFEMP1	2202	broad.mit.edu	36	2	56003000	56003000	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001039348	exon3	c.C80T	p.T27M	.	.	.
ANTXR1	84168	broad.mit.edu	36	2	69263259	69263259	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032208	exon16	c.G1316A	p.R439Q	.	.	.
MOGS	7841	broad.mit.edu	36	2	74545327	74545327	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001146158	exon3	c.C65T	p.P22L	.	.	.
ASAP2	8853	broad.mit.edu	36	2	9446053	9446053	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001135191	exon22	c.C2310G	p.S770R	.	.	.
PROM2	150696	broad.mit.edu	36	2	95305799	95305799	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_144707	exon4	c.G595A	p.G199S	.	.	.
INPP4A	3631	broad.mit.edu	36	2	98542367	98542367	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001134225	exon17	c.C1832A	p.P611H	.	.	.
PPM1L	151742	broad.mit.edu	36	3	162269536	162269536	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_139245	exon4	c.G980T	p.G327V	.	.	.
SCN10A	6336	broad.mit.edu	36	3	38741797	38741797	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006514	exon17	c.C3100T	p.Q1034X	.	.	.
VPRBP	9730	broad.mit.edu	36	3	51415794	51415794	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001171904	exon22	c.G4126A	p.D1376N	.	.	.
MITF	4286	broad.mit.edu	36	3	70091231	70091231	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198158	exon8	c.C810T	p.H270H	.	.	.
GRM7	2917	broad.mit.edu	36	3	7595629	7595629	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000844	exon8	c.G2036A	p.R679Q	.	.	.
GSTCD	79807	broad.mit.edu	36	4	106975091	106975091	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024751	exon9	c.G1294C	p.A432P	.	.	.
CORIN	10699	broad.mit.edu	36	4	47358552	47358552	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006587	exon12	c.T1668G	p.D556E	.	.	.
EVC2	132884	broad.mit.edu	36	4	5738017	5738017	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001166136	exon6	c.C557A	p.T186N	.	.	.
PPP2R2C	5522	broad.mit.edu	36	4	6376105	6376105	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020416	exon9	c.C1169T	p.P390L	.	.	.
SPP1	6696	broad.mit.edu	36	4	89122949	89122949	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000582	exon6	c.C780A	p.H260Q	.	.	.
CDO1	1036	broad.mit.edu	36	5	115179929	115179929	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001801	exon1	c.T65C	p.L22P	.	.	.
PCDHB1	29930	broad.mit.edu	36	5	140412915	140412915	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_013340	exon1	c.G1676A	p.R559H	.	.	.
PCDHGB2	56103	broad.mit.edu	36	5	140722261	140722261	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018923	exon1	c.A2375T	p.N792I	.	.	.
GRIA1	2890	broad.mit.edu	36	5	153045985	153045985	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001114183	exon8	c.T1037C	p.F346S	.	.	.
NKX2-5	1482	broad.mit.edu	36	5	172592277	172592277	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004387	exon2	c.C876T	p.F292F	.	.	.
MTMR12	54545	broad.mit.edu	36	5	32270857	32270857	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001040446	exon14	c.T1480G	p.F494V	.	.	.
KIAA0947	23379	broad.mit.edu	36	5	5517683	5517683	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015325	exon13	c.G5236C	p.E1746Q	.	.	.
BDP1	55814	broad.mit.edu	36	5	70876637	70876637	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018429	exon32	c.A6579G	p.E2193E	.	.	.
PDE8B	8622	broad.mit.edu	36	5	76676467	76676467	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003719	exon7	c.C831G	p.H277Q	.	.	.
PCDHGB4	8641	broad.mit.edu	36	5	140747676	140747681	+	In_Frame_Del	DEL	TGCCAG	-	-	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	TGCCAG	TGCCAG	TGCCAG	-	TGCCAG	-	Unknown	Valid	Germline	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032098	exon1	c.41_46del	p.14_16del	.	.	.
IL20RA	53832	broad.mit.edu	36	6	137371695	137371696	+	Splice_Site	INS	-	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
PDE7B	27115	broad.mit.edu	36	6	136510268	136510268	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018945	exon4	c.C253T	p.L85F	.	.	.
UNC93A	54346	broad.mit.edu	36	6	167648828	167648828	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001143947	exon7	c.G1146A	p.A382A	.	.	.
SCGN	10590	broad.mit.edu	36	6	25799301	25799301	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006998	exon10	c.G672T	p.G224G	.	.	.
HLA-DRB1	3123	broad.mit.edu	36	6	32659926	32659926	+	Frame_Shift_Del	DEL	G	-	-	rs67476479	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002124	exon2	c.308delT	p.L103fs	.	.	.
HLA-DRB1	3123	broad.mit.edu	36	6	32659933	32659933	+	Frame_Shift_Del	DEL	G	-	-	rs67798196	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002124	exon2	c.301delA	p.T101fs	.	.	.
DGKI	9162	broad.mit.edu	36	7	136857207	136857207	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004717	exon21	c.C2193T	p.I731I	.	.	.
C7orf27	221927	broad.mit.edu	36	7	2553552	2553552	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152743	exon3	c.G214A	p.V72I	.	.	.
ATP6V1C1	528	broad.mit.edu	36	8	104150057	104150057	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001695	exon13	c.C1055T	p.A352V	.	.	.
OXR1	55074	broad.mit.edu	36	8	107765752	107765752	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_181354	exon4	c.G493C	p.D165H	.	.	.
PKHD1L1	93035	broad.mit.edu	36	8	110541087	110541087	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_177531	exon47	c.C7092A	p.Y2364X	.	.	.
ASAP1	50807	broad.mit.edu	36	8	131142265	131142265	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018482	exon27	c.A2934G	p.S978S	.	.	.
TNFRSF10C	8794	broad.mit.edu	36	8	23030305	23030305	+	Missense_Mutation	SNP	C	A	A	rs12550828	by2Hit2Allele	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003841	exon5	c.C596A	p.T199N	.	.	.
ABCA1	19	broad.mit.edu	36	9	106633134	106633134	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005502	exon14	c.C1785T	p.Y595Y	.	.	.
SLC44A1	23446	broad.mit.edu	36	9	107165035	107165035	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_080546	exon9	c.C1013T	p.P338L	.	.	.
RABGAP1	23637	broad.mit.edu	36	9	124903794	124903794	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012197	exon25	c.G3018T	p.Q1006H	.	.	.
CER1	9350	broad.mit.edu	36	9	14710330	14710330	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005454	exon2	c.G562A	p.G188R	.	.	.
LINGO2	158038	broad.mit.edu	36	9	27939697	27939697	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152570	exon7	c.G973A	p.V325M	.	.	.
TMEM2	23670	broad.mit.edu	36	9	73514159	73514159	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_013390	exon17	c.G2821A	p.E941K	.	.	.
CHRDL1	91851	broad.mit.edu	36	X	109806241	109806241	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001143981	exon12	c.G1251T	p.Q417H	.	.	.
CNKSR2	22866	broad.mit.edu	36	X	21459918	21459918	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001168649	exon10	c.G968T	p.C323F	.	.	.
DDX53	168400	broad.mit.edu	36	X	22928342	22928342	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182699	exon1	c.C247G	p.Q83E	.	.	.
GYG2	8908	broad.mit.edu	36	X	2783087	2783087	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001184703	exon6	c.G471A	p.P157P	.	.	.