Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
TACC2	10579	broad.mit.edu	36	10	123960813	123960813	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006997	exon3	c.G1117A	p.A373T	.	.	.
CAMK1D	57118	broad.mit.edu	36	10	12906522	12906522	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020397	exon9	c.C886G	p.Q296E	.	.	.
FRMD4A	55691	broad.mit.edu	36	10	13739389	13739389	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018027	exon22	c.C2206T	p.R736C	.	.	.
DRGX	644168	broad.mit.edu	36	10	50244330	50244330	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080520	exon6	c.G644A	p.R215H	.	.	.
FBXO18	84893	broad.mit.edu	36	10	5991241	5991241	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032807	exon6	c.C1151T	p.P384L	.	.	.
CTNNA3	29119	broad.mit.edu	36	10	67350318	67350318	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_013266	exon18	c.G2464T	p.V822L	.	.	.
SLIT1	6585	broad.mit.edu	36	10	98752588	98752588	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003061	exon35	c.C4017T	p.C1339C	.	.	.
OR8B4	283162	broad.mit.edu	36	11	123799117	123799117	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005196	exon1	c.G861T	p.S287S	.	.	.
ROBO4	54538	broad.mit.edu	36	11	124269382	124269382	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_019055	exon8	c.T1243G	p.S415A	.	.	.
CHST1	8534	broad.mit.edu	36	11	45628228	45628228	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003654	exon4	c.G822A	p.T274T	.	.	.
OR4A15	81328	broad.mit.edu	36	11	54891974	54891974	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001005275	exon1	c.C39A	p.D13E	.	.	.
SPRYD5	84767	broad.mit.edu	36	11	55412186	55412186	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032681	exon4	c.G610A	p.E204K	.	.	.
RDH5	5959	broad.mit.edu	36	12	54404078	54404079	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002905	exon4	c.711_712insG	p.Y237fs	.	.	.
EP400	57634	broad.mit.edu	36	12	131037049	131037049	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015409	exon6	c.C1964T	p.P655L	.	.	.
EP400	57634	broad.mit.edu	36	12	131064106	131064106	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015409	exon18	c.G3727A	p.A1243T	.	.	.
DENND5B	160518	broad.mit.edu	36	12	31457730	31457730	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_144973	exon13	c.T2588C	p.V863A	.	.	.
KRT4	3851	broad.mit.edu	36	12	51488791	51488791	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002272	exon5	c.C1167T	p.Y389Y	.	.	.
HOXC10	3226	broad.mit.edu	36	12	52665778	52665778	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017409	exon1	c.C468T	p.S156S	.	.	.
MIP	4284	broad.mit.edu	36	12	55133743	55133743	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012064	exon2	c.G424A	p.V142M	.	.	.
ERCC5	2073	broad.mit.edu	36	13	102316112	102316112	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000123	exon9	c.G2049A	p.E683E	.	.	.
PCDH20	64881	broad.mit.edu	36	13	60884794	60884794	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_022843	exon2	c.A1439G	p.Y480C	.	.	.
SLITRK1	114798	broad.mit.edu	36	13	83352667	83352667	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_052910	exon1	c.C977T	p.A326V	.	.	.
DOCK9	23348	broad.mit.edu	36	13	98318581	98318581	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001130050	exon28	c.G2995A	p.V999I	.	.	.
DLK1	8788	broad.mit.edu	36	14	100270372	100270372	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003836	exon5	c.G538A	p.E180K	.	.	.
C14orf182	283551	broad.mit.edu	36	14	49542123	49542123	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001012706	exon1	c.C145T	p.R49X	.	.	.
RYR3	6263	broad.mit.edu	36	15	31802258	31802258	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001036	exon44	c.C6670T	p.R2224C	.	.	.
MAPKBP1	23005	broad.mit.edu	36	15	39890388	39890388	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014994	exon4	c.G222A	p.L74L	.	.	.
EHD4	30844	broad.mit.edu	36	15	39980246	39980246	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_139265	exon6	c.G1515A	p.A505A	.	.	.
ZFP106	64397	broad.mit.edu	36	15	40496828	40496828	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_022473	exon19	c.G5618A	p.R1873Q	.	.	.
PLEKHO2	80301	broad.mit.edu	36	15	62940769	62940769	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001195059	exon4	c.G275A	p.R92Q	.	.	.
SLCO3A1	28232	broad.mit.edu	36	15	90491352	90491352	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013272	exon8	c.C1647T	p.I549I	.	.	.
MYH11	4629	broad.mit.edu	36	16	15760994	15760994	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001040114	exon13	c.C1362A	p.T454T	.	.	.
SRCAP	10847	broad.mit.edu	36	16	30656004	30656004	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006662	exon34	c.G7142A	p.R2381H	.	.	.
COX6A2	1339	broad.mit.edu	36	16	31346662	31346662	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005205	exon3	c.C228T	p.D76D	.	.	.
ZFHX3	463	broad.mit.edu	36	16	71385934	71385935	+	Missense_Mutation	DNP	GC	AA	AA	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	GC	GC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006885	exon9	c.8147_8148TT	.	.	.	.
RBFOX1	54715	broad.mit.edu	36	16	7666808	7666808	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145893	exon11	c.C1025T	p.P342L	.	.	.
VPS53	55275	broad.mit.edu	36	17	412533	412533	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001128159	exon14	c.C1516T	p.R506X	.	.	.
KRT40	125115	broad.mit.edu	36	17	36392219	36392219	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
GALR1	2587	broad.mit.edu	36	18	73109768	73109768	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001480	exon3	c.A972G	p.K324K	.	.	.
BCAM	4059	broad.mit.edu	36	19	50007416	50007416	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001013257	exon3	c.C361T	p.R121X	.	.	.
MARK4	57787	broad.mit.edu	36	19	50475809	50475809	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001199867	exon12	c.G1253A	p.R418H	 MARK4,large_intestine,caecum,Substitution - Missense,+1 	.	.
CARD8	22900	broad.mit.edu	36	19	53425995	53425995	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001184902	exon9	c.C623T	p.T208M	.	.	.
ZNF677	342926	broad.mit.edu	36	19	58433403	58433403	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_182609	exon5	c.A389C	p.H130P	.	.	.
NLRP5	126206	broad.mit.edu	36	19	61230961	61230961	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_153447	exon7	c.G1550A	p.R517Q	.	.	.
OR1M1	125963	broad.mit.edu	36	19	9065469	9065469	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004456	exon1	c.C549T	p.P183P	.	.	.
NRAS	4893	broad.mit.edu	36	1	115060270	115060270	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002524	exon2	c.G35C	p.G12A	 NRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.
WDR3	10885	broad.mit.edu	36	1	118303130	118303130	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006784	exon26	c.C2657T	p.S886L	.	.	.
ECM1	1893	broad.mit.edu	36	1	148751482	148751482	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004425	exon8	c.C1114T	p.R372W	.	.	.
HRNR	388697	broad.mit.edu	36	1	150459090	150459090	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001009931	exon3	c.C1639T	p.R547X	.	.	.
OLFML2B	25903	broad.mit.edu	36	1	160234618	160234618	+	Silent	SNP	G	A	A	rs34123330	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015441	exon6	c.C1095T	p.N365N	.	.	.
SLC9A11	284525	broad.mit.edu	36	1	171817693	171817693	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_178527	exon7	c.C718A	p.Q240K	.	.	.
ABL2	27	broad.mit.edu	36	1	177346195	177346195	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001168239	exon10	c.G1562A	p.G521E	.	.	.
CACNA1E	777	broad.mit.edu	36	1	180011911	180011911	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000721	exon38	c.C5191T	p.R1731W	.	.	.
NPL	80896	broad.mit.edu	36	1	181039522	181039522	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_030769	exon3	c.C135T	p.N45N	.	.	.
FAM58B	339521	broad.mit.edu	36	1	198449363	198449363	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001105517	exon1	c.G49C	p.E17Q	.	.	.
TNNI1	7135	broad.mit.edu	36	1	199646122	199646122	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003281	exon7	c.G521A	p.R174Q	.	.	.
PLEKHA6	22874	broad.mit.edu	36	1	202459275	202459275	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014935	exon22	c.C3093T	p.P1031P	.	.	.
SYT14	255928	broad.mit.edu	36	1	208253707	208253707	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153262	exon3	c.C168T	p.G56G	.	.	.
TCEB3	6924	broad.mit.edu	36	1	23955428	23955428	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003198	exon9	c.G2128A	p.G710R	.	.	.
OR2G6	391211	broad.mit.edu	36	1	246751996	246751996	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001013355	exon1	c.G426A	p.A142A	.	.	.
MACF1	23499	broad.mit.edu	36	1	39671389	39671389	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012090	exon64	c.G11354A	p.G3785E	.	.	.
ZCCHC11	23318	broad.mit.edu	36	1	52719795	52719795	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001009881	exon11	c.A1736C	p.E579A	.	.	.
ZNF683	257101	broad.mit.edu	36	1	26563874	26563897	+	In_Frame_Del	DEL	CCACCGAGCGCTGGGGTGCCCCAG	-	-	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	CCACCGAGCGCTGGGGTGCCCCAG	CCACCGAGCGCTGGGGTGCCCCAG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001114759	exon4	c.727_750del	p.243_250del	.	.	.
PCSK2	5126	broad.mit.edu	36	20	17410523	17410523	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002594	exon12	c.C1725T	p.V575V	.	.	.
PLCB1	23236	broad.mit.edu	36	20	8556984	8556984	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182734	exon4	c.G290A	p.R97H	.	.	.
PANX2	56666	broad.mit.edu	36	22	48959573	48959573	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052839	exon3	c.C1774T	p.R592C	.	.	.
RAB6C	84084	broad.mit.edu	36	2	130454170	130454170	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032144	exon1	c.C12T	p.G4G	.	.	.
ACMSD	130013	broad.mit.edu	36	2	135337576	135337576	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138326	exon5	c.C391T	p.R131C	.	.	.
RBM43	375287	broad.mit.edu	36	2	151815718	151815718	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198557	exon4	c.C1022T	p.T341I	.	.	.
GALNT13	114805	broad.mit.edu	36	2	154509338	154509338	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_052917	exon3	c.T82C	p.F28L	.	.	.
GALNT5	11227	broad.mit.edu	36	2	157823065	157823065	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014568	exon1	c.A225G	p.K75K	.	.	.
RAPGEF4	11069	broad.mit.edu	36	2	173368018	173368018	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_007023	exon2	c.G85T	p.E29X	.	.	.
TTN	7273	broad.mit.edu	36	2	179107038	179107038	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003319	exon186	c.G75354A	p.T25118T	.	.	.
TTN	7273	broad.mit.edu	36	2	179285187	179285187	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_133378	exon93	c.G23883A	p.P7961P	.	.	.
ERBB4	2066	broad.mit.edu	36	2	212003925	212003925	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005235	exon21	c.A2633T	p.D878V	.	.	.
ABCA12	26154	broad.mit.edu	36	2	215570716	215570716	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_173076	exon23	c.T3242C	p.I1081T	.	.	.
NGEF	25791	broad.mit.edu	36	2	233464331	233464331	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001114090	exon6	c.G977A	p.R326H	.	.	.
COL6A3	1293	broad.mit.edu	36	2	237945129	237945129	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_057166	exon6	c.C2449T	p.R817C	.	.	.
AGBL5	60509	broad.mit.edu	36	2	27131599	27131599	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001035507	exon6	c.C882T	p.P294P	.	.	.
NFKBIZ	64332	broad.mit.edu	36	3	103054687	103054688	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_031419	exon5	c.627_628insC	p.K209fs	.	.	.
C3orf27	23434	broad.mit.edu	36	3	129775187	129775187	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007354	exon3	c.G76A	p.V26I	.	.	.
NLGN1	22871	broad.mit.edu	36	3	175480001	175480001	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014932	exon6	c.G1516A	p.G506R	.	.	.
PIK3CA	5290	broad.mit.edu	36	3	180418776	180418776	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006218	exon10	c.G1624A	p.E542K	 PIK3CA,central_nervous_system,brain,Substitution - Missense,0 	.	.
LARP1B	55132	broad.mit.edu	36	4	129262687	129262687	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178043	exon11	c.G1418T	p.R473L	.	.	.
TMEM184C	55751	broad.mit.edu	36	4	148773561	148773561	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018241	exon8	c.G837A	p.T279T	.	.	.
FBXW7	55294	broad.mit.edu	36	4	153466824	153466824	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018315	exon9	c.C1188A	p.S396R	.	.	.
FAT1	2195	broad.mit.edu	36	4	187771427	187771427	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005245	exon13	c.G9293C	p.R3098T	.	.	.
JAKMIP1	152789	broad.mit.edu	36	4	6088648	6088648	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001099433	exon19	c.C2263T	p.R755W	.	.	.
HELQ	113510	broad.mit.edu	36	4	84593604	84593604	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_133636	exon2	c.C816T	p.A272A	.	.	.
DTWD2	285605	broad.mit.edu	36	5	118308183	118308183	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173666	exon2	c.C279T	p.T93T	.	.	.
PCDHB12	56124	broad.mit.edu	36	5	140569890	140569890	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018932	exon1	c.G1227A	p.L409L	.	.	.
TRIO	7204	broad.mit.edu	36	5	14422577	14422577	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_007118	exon18	c.A3161C	p.D1054A	.	.	.
WWC1	23286	broad.mit.edu	36	5	167744934	167744934	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001161661	exon3	c.G370T	p.A124S	.	.	.
HRH2	3274	broad.mit.edu	36	5	175042908	175042908	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022304	exon1	c.C66T	p.T22T	.	.	.
C5orf22	55322	broad.mit.edu	36	5	31588708	31588708	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018356	exon9	c.G1271A	p.R424H	.	.	.
MEF2C	4208	broad.mit.edu	36	5	88092851	88092851	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001193350	exon4	c.G309A	p.A103A	.	.	.
SEMA5A	9037	broad.mit.edu	36	5	9116103	9116103	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003966	exon18	c.G2414A	p.R805Q	.	.	.
MCTP1	79772	broad.mit.edu	36	5	94301554	94301554	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001002796	exon5	c.C500A	p.S167Y	.	.	.
APC	324	broad.mit.edu	36	5	112202347	112202347	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.3103delA	p.K1035fs	.	.	.
SOBP	55084	broad.mit.edu	36	6	107934283	107934283	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018013	exon3	c.T380C	p.I127T	.	.	.
HIST1H2AB	8335	broad.mit.edu	36	6	26141475	26141475	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003513	exon1	c.G301A	p.V101M	.	.	.
HSPA1L	3305	broad.mit.edu	36	6	31886945	31886945	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005527	exon2	c.G784A	p.V262M	.	.	.
TNXB	7148	broad.mit.edu	36	6	32123615	32123615	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_019105	exon30	c.C10192T	p.P3398S	.	.	.
TAP1	6890	broad.mit.edu	36	6	32929039	32929039	+	Nonsense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000593	exon1	c.C533G	p.S178X	.	.	.
RIMS1	22999	broad.mit.edu	36	6	72735466	72735466	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014989	exon2	c.A224C	p.N75T	.	.	.
GJB7	375519	broad.mit.edu	36	6	88051257	88051257	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198568	exon3	c.C93T	p.F31F	.	.	.
TMEM120A	83862	broad.mit.edu	36	7	75455772	75455773	+	Splice_Site	INS	-	G	G	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
PLXNA4	91584	broad.mit.edu	36	7	131843432	131843432	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_181775	exon3	c.G561A	p.T187T	.	.	.
SLC25A13	10165	broad.mit.edu	36	7	95651585	95651585	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014251	exon11	c.A1117G	p.N373D	.	.	.
ZFAT	57623	broad.mit.edu	36	8	135739092	135739092	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001174157	exon2	c.C90T	p.H30H	.	.	.
KCNK9	51305	broad.mit.edu	36	8	140784326	140784326	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016601	exon1	c.C92A	p.S31X	.	.	.
PNPLA7	375775	broad.mit.edu	36	9	139476270	139476271	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	-	-	-	C	-	C	Unknown	Valid	Germline	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152286	exon31	c.3615_3616insG	p.G1205fs	.	.	.
ZNF618	114991	broad.mit.edu	36	9	115851236	115851236	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_133374	exon14	c.C1554T	p.I518I	.	.	.
FAM75D1	389763	broad.mit.edu	36	9	83797878	83797878	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001670	exon4	c.A2673G	p.E891E	.	.	.
AFF2	2334	broad.mit.edu	36	X	147845345	147845345	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002025	exon11	c.G2070A	p.L690L	.	.	.
PHEX	5251	broad.mit.edu	36	X	22061605	22061605	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000444	exon12	c.G1347T	p.M449I	.	.	.