Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
ATM	472	broad.mit.edu	36	11	107678934	107678934	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000051	exon36	c.G5464T	p.E1822X	.	.	.
ZFP91	80829	broad.mit.edu	36	11	58141462	58141462	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_053023	exon11	c.G1420C	p.D474H	.	.	.
ESRRA	2101	broad.mit.edu	36	11	63839242	63839242	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004451	exon6	c.A936G	p.L312L	.	.	.
WDR66	144406	broad.mit.edu	36	12	120843958	120843958	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001178003	exon2	c.T364A	p.S122T	.	.	.
NELL2	4753	broad.mit.edu	36	12	43457116	43457116	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001145108	exon7	c.T738C	p.D246D	.	.	.
C13orf16	121793	broad.mit.edu	36	13	110793179	110793179	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152324	exon5	c.G315A	p.A105A	.	.	.
IFT88	8100	broad.mit.edu	36	13	20070813	20070813	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_175605	exon12	c.G645C	p.Q215H	.	.	.
CCNA1	8900	broad.mit.edu	36	13	35913258	35913258	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001111047	exon7	c.G970A	p.V324I	.	.	.
ISLR2	57611	broad.mit.edu	36	15	72213752	72213753	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001130136	exon4	c.1604_1605insG	p.A535fs	.	.	.
SLC12A1	6557	broad.mit.edu	36	15	46324267	46324267	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001184832	exon11	c.C1326T	p.T442T	.	.	.
SRCAP	10847	broad.mit.edu	36	16	30642792	30642792	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006662	exon25	c.T4546G	p.S1516A	.	.	.
PMFBP1	83449	broad.mit.edu	36	16	70711478	70711478	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001160213	exon21	c.G2405A	p.S802N	.	.	.
ACACA	31	broad.mit.edu	36	17	32666045	32666045	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198834	exon25	c.C3204T	p.H1068H	.	.	.
CACNA1G	8913	broad.mit.edu	36	17	46033116	46033116	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198382	exon17	c.C3652T	p.R1218X	.	.	.
CCDC45	90799	broad.mit.edu	36	17	59949439	59949439	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138363	exon8	c.C873T	p.A291A	.	.	.
FOXK2	3607	broad.mit.edu	36	17	78133936	78133936	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004514	exon5	c.C940T	p.R314C	.	.	.
TP53	7157	broad.mit.edu	36	17	7520233	7520233	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon4	c.179delC	p.P60fs	 TP53,central_nervous_system,brain,Substitution - Missense,0 	.	.
NOL4	8715	broad.mit.edu	36	18	29963927	29963927	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001198546	exon2	c.A320T	p.D107V	.	.	.
ENOSF1	55556	broad.mit.edu	36	18	696501	696501	+	Nonsense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126123	exon2	c.T32A	p.L11X	.	.	.
TICAM1	148022	broad.mit.edu	36	19	4767464	4767465	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182919	exon2	c.1926_1927insC	p.P642fs	.	.	.
PVRL2	5819	broad.mit.edu	36	19	50073361	50073362	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002856	exon6	c.1084_1085insG	p.W362fs	.	.	.
NLRP13	126204	broad.mit.edu	36	19	61135332	61135332	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_176810	exon1	c.C158T	p.P53L	.	.	.
MUC16	94025	broad.mit.edu	36	19	8878469	8878469	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024690	exon26	c.C37855T	p.R12619C	.	.	.
CELSR2	1952	broad.mit.edu	36	1	109615380	109615380	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001408	exon26	c.A7615G	p.I2539V	.	.	.
KCNT2	343450	broad.mit.edu	36	1	194551701	194551701	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198503	exon21	c.C2427T	p.A809A	.	.	.
ANKRD5	63926	broad.mit.edu	36	20	9978811	9978811	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198798	exon6	c.G1594T	p.A532S	.	.	.
RIMBP3	85376	broad.mit.edu	36	22	18837514	18837514	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015672	exon1	c.A3788C	p.E1263A	.	.	.
TANC1	85461	broad.mit.edu	36	2	159739812	159739812	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033394	exon12	c.G1606T	p.A536S	.	.	.
TTN	7273	broad.mit.edu	36	2	179324748	179324748	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_133379	exon46	c.C10624T	p.R3542W	.	.	.
REG1A	5967	broad.mit.edu	36	2	79203512	79203512	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002909	exon5	c.C359T	p.S120F	.	.	.
COL7A1	1294	broad.mit.edu	36	3	48598676	48598676	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000094	exon27	c.T3558C	p.N1186N	.	.	.
FOXP1	27086	broad.mit.edu	36	3	71097897	71097897	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032682	exon20	c.G1723T	p.A575S	.	.	.
KIT	3815	broad.mit.edu	36	4	55256643	55256643	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000222	exon2	c.C276T	p.T92T	.	.	.
APC	324	broad.mit.edu	36	5	112156100	112156100	+	Nonsense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127510	exon8	c.T704A	p.L235X	.	.	.
APC	324	broad.mit.edu	36	5	112203202	112203202	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.C3958T	p.Q1320X	 APC,large_intestine,colon,Substitution - Nonsense,0 	.	.
PCDHB6	56130	broad.mit.edu	36	5	140510838	140510838	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018939	exon1	c.G816A	p.S272S	.	.	.
PCDHB13	56123	broad.mit.edu	36	5	140575039	140575039	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018933	exon1	c.A1160C	p.Q387P	.	.	.
FAT2	2196	broad.mit.edu	36	5	150906072	150906072	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001447	exon9	c.C4809G	p.F1603L	.	.	.
MYCT1	80177	broad.mit.edu	36	6	153084753	153084753	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025107	exon2	c.G380A	p.R127H	.	.	.
C6orf10	10665	broad.mit.edu	36	6	32369367	32369367	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006781	exon23	c.C1061T	p.T354I	.	.	.
KLC4	89953	broad.mit.edu	36	6	43147318	43147318	+	Missense_Mutation	SNP	C	T	T	rs41274918	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_201521	exon10	c.C1291T	p.R431W	.	.	.
CD2AP	23607	broad.mit.edu	36	6	47671600	47671600	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012120	exon12	c.C1153G	p.P385A	.	.	.
ZAN	7455	broad.mit.edu	36	7	100199428	100199428	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173059	exon21	c.G4050A	p.S1350S	.	.	.
ZC3HC1	51530	broad.mit.edu	36	7	129476140	129476140	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016478	exon2	c.A227T	p.E76V	.	.	.
COL14A1	7373	broad.mit.edu	36	8	121365078	121365078	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021110	exon32	c.C3847T	p.P1283S	.	.	.
ASAP1	50807	broad.mit.edu	36	8	131142331	131142331	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018482	exon27	c.G2868A	p.P956P	.	.	.
PHYHIP	9796	broad.mit.edu	36	8	22134823	22134823	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014759	exon5	c.C981T	p.S327S	.	.	.
LYN	4067	broad.mit.edu	36	8	57085156	57085156	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002350	exon13	c.A1472G	p.D491G	.	.	.
AFF2	2334	broad.mit.edu	36	X	147845075	147845075	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002025	exon11	c.C1800A	p.P600P	.	.	.
ERCC6L	54821	broad.mit.edu	36	X	71343147	71343147	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017669	exon2	c.G2195A	p.R732K	.	.	.
ZCCHC5	203430	broad.mit.edu	36	X	77800359	77800359	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152694	exon2	c.C215A	p.A72E	.	.	.