Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
ADRB1	153	broad.mit.edu	36	10	115794400	115794400	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000684	exon1	c.G519A	p.A173A	.	.	.
CACNB2	783	broad.mit.edu	36	10	18867280	18867280	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_201596	exon13	c.A1468C	p.T490P	.	.	.
BMI1	648	broad.mit.edu	36	10	22656541	22656541	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005180	exon4	c.C221G	p.T74S	.	.	.
PTCHD3	374308	broad.mit.edu	36	10	27742557	27742557	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001034842	exon1	c.C629T	p.S210L	.	.	.
PGBD3	267004	broad.mit.edu	36	10	50393620	50393620	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_170753	exon2	c.G1547A	p.R516H	.	.	.
JMJD1C	221037	broad.mit.edu	36	10	64638359	64638359	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004241	exon7	c.C2419T	p.L807F	.	.	.
EXOC6	54536	broad.mit.edu	36	10	94808025	94808025	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001013848	exon22	c.C2323T	p.R775X	.	.	.
ZDHHC16	84287	broad.mit.edu	36	10	99205739	99205739	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198043	exon9	c.A919G	p.N307D	.	.	.
BCL9L	283149	broad.mit.edu	36	11	118278473	118278474	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_182557	exon6	c.1189_1190insA	p.E397fs	.	.	.
OR51E1	143503	broad.mit.edu	36	11	4631158	4631158	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152430	exon2	c.G826A	p.V276I	.	.	.
CCKBR	887	broad.mit.edu	36	11	6248003	6248003	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_176875	exon3	c.G513A	p.A171A	.	.	.
FOXN4	121643	broad.mit.edu	36	12	108203878	108203878	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_213596	exon9	c.G1011A	p.A337A	.	.	.
C12orf51	283450	broad.mit.edu	36	12	111107217	111107217	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001109662	exon60	c.G9420A	p.R3140R	.	.	.
GLT1D1	144423	broad.mit.edu	36	12	127997905	127997905	+	Silent	SNP	C	T	T	rs12581064	byHapMap	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144669	exon6	c.C489T	p.F163F	.	.	.
PARP11	57097	broad.mit.edu	36	12	3801369	3801369	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020367	exon6	c.C479T	p.T160M	.	.	.
FIGNL2	401720	broad.mit.edu	36	12	50502160	50502160	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001013690	exon1	c.C305T	p.P102L	.	.	.
PAN2	9924	broad.mit.edu	36	12	55007572	55007572	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001166279	exon6	c.C762T	p.F254F	.	.	.
LRP1	4035	broad.mit.edu	36	12	55836916	55836916	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002332	exon10	c.A1507C	p.T503P	.	.	.
NAV3	89795	broad.mit.edu	36	12	77055248	77055248	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014903	exon19	c.G4602A	p.S1534S	.	.	.
DCN	1634	broad.mit.edu	36	12	90071079	90071079	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001920	exon6	c.C671T	p.T224M	.	.	.
TPP2	7174	broad.mit.edu	36	13	102107452	102107452	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003291	exon24	c.A2998G	p.T1000A	.	.	.
SUGT1	10910	broad.mit.edu	36	13	52125188	52125188	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001130912	exon2	c.C45A	p.F15L	.	.	.
LMO7	4008	broad.mit.edu	36	13	75233080	75233080	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005358	exon5	c.C378A	p.N126K	.	.	.
GPC5	2262	broad.mit.edu	36	13	91178806	91178806	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004466	exon4	c.G1040A	p.R347H	.	.	.
SEC23A	10484	broad.mit.edu	36	14	38579774	38579774	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006364	exon18	c.G2055A	p.L685L	.	.	.
C14orf183	196913	broad.mit.edu	36	14	49628223	49628223	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001014830	exon2	c.C95A	p.P32H	.	.	.
SERPINA5	5104	broad.mit.edu	36	14	94126337	94126337	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000624	exon4	c.C826A	p.Q276K	.	.	.
TUBGCP5	114791	broad.mit.edu	36	15	20398365	20398365	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052903	exon8	c.G799A	p.E267K	.	.	.
RPAP1	26015	broad.mit.edu	36	15	39603383	39603383	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015540	exon17	c.G2314C	p.E772Q	.	.	.
ZNF174	7727	broad.mit.edu	36	16	3398833	3398833	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003450	exon3	c.G1137A	p.E379E	.	.	.
NUP93	9688	broad.mit.edu	36	16	55424690	55424690	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014669	exon13	c.G1408A	p.A470T	.	.	.
SLC12A4	6560	broad.mit.edu	36	16	66538440	66538440	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001145964	exon17	c.C2049T	p.F683F	.	.	.
ACE	1636	broad.mit.edu	36	17	58914612	58914612	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000789	exon10	c.G1547T	p.G516V	.	.	.
TP53	7157	broad.mit.edu	36	17	7519127	7519127	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001126114	exon5	c.C528A	p.C176X	 TP53,central_nervous_system,brain,Substitution - Missense,-1 	.	.
DNAH2	146754	broad.mit.edu	36	17	7609460	7609460	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020877	exon20	c.C3363T	p.N1121N	.	.	.
CDH20	28316	broad.mit.edu	36	18	57308853	57308853	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031891	exon1	c.G87A	p.T29T	.	.	.
RFX1	5989	broad.mit.edu	36	19	13955035	13955035	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002918	exon4	c.G477A	p.S159S	.	.	.
USHBP1	83878	broad.mit.edu	36	19	17228447	17228447	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_031941	exon9	c.C1303T	p.R435C	.	.	.
JSRP1	126306	broad.mit.edu	36	19	2203653	2203653	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144616	exon7	c.G671A	p.R224Q	.	.	.
TSHZ3	57616	broad.mit.edu	36	19	36461093	36461093	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020856	exon2	c.C1446T	p.D482D	.	.	.
ZBTB7A	51341	broad.mit.edu	36	19	4005014	4005014	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015898	exon2	c.G1217T	p.G406V	.	.	.
PLIN4	729359	broad.mit.edu	36	19	4462223	4462223	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080400	exon3	c.G2707A	p.V903M	.	.	.
CYP2F1	1572	broad.mit.edu	36	19	46319753	46319753	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000774	exon6	c.C697T	p.R233C	.	.	.
HNRNPUL1	11100	broad.mit.edu	36	19	46466045	46466045	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_144732	exon2	c.G73A	p.E25K	.	.	.
UHRF1	29128	broad.mit.edu	36	19	4911756	4911756	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001048201	exon17	c.A2323C	p.T775P	.	.	.
ZNF180	7733	broad.mit.edu	36	19	49673973	49673973	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013256	exon5	c.G565A	p.V189I	.	.	.
IGLON5	402665	broad.mit.edu	36	19	56522952	56522952	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001101372	exon7	c.C922T	p.R308C	.	.	.
CACNG7	59284	broad.mit.edu	36	19	59136637	59136637	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_031896	exon4	c.G526A	p.G176R	.	.	.
ZNF132	7691	broad.mit.edu	36	19	63637385	63637385	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003433	exon3	c.G1238A	p.S413N	.	.	.
PDE4DIP	9659	broad.mit.edu	36	1	143590676	143590676	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001198832	exon30	c.C3999A	p.S1333R	.	.	.
POGZ	23126	broad.mit.edu	36	1	149663189	149663189	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_145796	exon7	c.C1098T	p.V366V	.	.	.
VANGL2	57216	broad.mit.edu	36	1	158655753	158655753	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020335	exon4	c.G530A	p.R177H	.	.	.
QSOX1	5768	broad.mit.edu	36	1	178419677	178419677	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002826	exon7	c.C756A	p.L252L	.	.	.
NFASC	23114	broad.mit.edu	36	1	203209996	203209996	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001160331	exon11	c.G1379A	p.R460Q	.	.	.
CNTN2	6900	broad.mit.edu	36	1	203302877	203302877	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005076	exon16	c.C2001T	p.A667A	.	.	.
SPATA17	128153	broad.mit.edu	36	1	215923254	215923254	+	Missense_Mutation	SNP	G	A	A	rs35503371	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_138796	exon5	c.G323A	p.R108Q	.	.	.
RHD	6007	broad.mit.edu	36	1	25500743	25500743	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127691	exon5	c.C780A	p.H260Q	.	.	.
GRIK3	2899	broad.mit.edu	36	1	37043222	37043222	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000831	exon15	c.G2518A	p.V840M	.	.	.
PABPC4	8761	broad.mit.edu	36	1	39810791	39810791	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001135653	exon2	c.G248A	p.R83H	.	.	.
LPAR3	23566	broad.mit.edu	36	1	85103909	85103909	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012152	exon2	c.G483A	p.A161A	.	.	.
LPPR5	163404	broad.mit.edu	36	1	99194869	99194869	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001037317	exon2	c.C254A	p.T85N	.	.	.
L3MBTL1	26013	broad.mit.edu	36	20	41596927	41596927	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032107	exon16	c.G1690A	p.A564T	.	.	.
ZNFX1	57169	broad.mit.edu	36	20	47297743	47297743	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_021035	exon14	c.C5225G	p.A1742G	.	.	.
APCDD1L	164284	broad.mit.edu	36	20	56469567	56469567	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_153360	exon4	c.C1191T	p.N397N	.	.	.
SLCO4A1	28231	broad.mit.edu	36	20	60768345	60768345	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016354	exon7	c.C1445T	p.A482V	.	.	.
IL17RA	23765	broad.mit.edu	36	22	15959695	15959695	+	Nonsense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014339	exon4	c.T341A	p.L114X	.	.	.
TFIP11	24144	broad.mit.edu	36	22	25225164	25225164	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012143	exon9	c.A1235G	p.Y412C	.	.	.
C22orf28	51493	broad.mit.edu	36	22	31118263	31118263	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014306	exon11	c.G1374A	p.A458A	.	.	.
TRIOBP	11078	broad.mit.edu	36	22	36449952	36449952	+	Silent	SNP	T	C	C	rs66505048	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001039141	exon7	c.T1443C	p.C481C	.	.	.
ACO2	50	broad.mit.edu	36	22	40225806	40225806	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001098	exon2	c.G167A	p.R56H	.	.	.
KLHDC7B	113730	broad.mit.edu	36	22	49334900	49334900	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138433	exon1	c.C1439A	p.A480D	.	.	.
MERTK	10461	broad.mit.edu	36	2	112502572	112502572	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006343	exon19	c.G2660A	p.G887D	.	.	.
MARCO	8685	broad.mit.edu	36	2	119448603	119448603	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006770	exon6	c.G605C	p.G202A	.	.	.
IMP4	92856	broad.mit.edu	36	2	130819508	130819508	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033416	exon4	c.C286T	p.R96C	.	.	.
SCN2A	6326	broad.mit.edu	36	2	165896240	165896240	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001040143	exon13	c.C2304T	p.C768C	.	.	.
LRP2	4036	broad.mit.edu	36	2	169770362	169770362	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004525	exon41	c.G7588T	p.A2530S	.	.	.
C2orf77	129881	broad.mit.edu	36	2	170245860	170245860	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001085447	exon2	c.C197T	p.T66I	.	.	.
TTN	7273	broad.mit.edu	36	2	179136617	179136617	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003319	exon154	c.C55292A	p.T18431K	.	.	.
ZNF804A	91752	broad.mit.edu	36	2	185510988	185510988	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_194250	exon4	c.C2620G	p.Q874E	.	.	.
INPP1	3628	broad.mit.edu	36	2	190944311	190944311	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002194	exon6	c.C1138T	p.R380W	.	.	.
KIF1A	547	broad.mit.edu	36	2	241361231	241361231	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004321	exon13	c.G1153A	p.A385T	.	.	.
RASGRP3	25780	broad.mit.edu	36	2	33598523	33598523	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_170672	exon6	c.G174A	p.M58I	.	.	.
ETAA1	54465	broad.mit.edu	36	2	67484017	67484017	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_019002	exon5	c.T699G	p.D233E	.	.	.
BSN	8927	broad.mit.edu	36	3	49672978	49672979	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003458	exon6	c.8696_8697insC	p.S2899fs	.	.	.
PLXND1	23129	broad.mit.edu	36	3	130772665	130772665	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015103	exon18	c.C3508T	p.L1170L	.	.	.
PFN2	5217	broad.mit.edu	36	3	151166674	151166674	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002628	exon3	c.C393T	p.L131L	.	.	.
PIK3CA	5290	broad.mit.edu	36	3	180405015	180405015	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006218	exon6	c.G1090A	p.G364R	.	.	.
FETUB	26998	broad.mit.edu	36	3	187853075	187853075	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014375	exon7	c.G1110A	p.G370G	.	.	.
CSPG5	10675	broad.mit.edu	36	3	47593911	47593911	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006574	exon2	c.G609A	p.P203P	.	.	.
COL7A1	1294	broad.mit.edu	36	3	48601115	48601115	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000094	exon19	c.C2551T	p.R851C	.	.	.
WDR6	11180	broad.mit.edu	36	3	49026267	49026267	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018031	exon2	c.G2386A	p.A796T	.	.	.
ROBO1	6091	broad.mit.edu	36	3	78791580	78791580	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002941	exon17	c.T2388A	p.V796V	.	.	.
DDX60	55601	broad.mit.edu	36	4	169374680	169374680	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017631	exon38	c.G5118T	p.W1706C	.	.	.
SCFD2	152579	broad.mit.edu	36	4	53434918	53434918	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152540	exon9	c.G2030A	p.R677Q	.	.	.
EVC2	132884	broad.mit.edu	36	4	5718263	5718263	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001166136	exon8	c.C645T	p.H215H	.	.	.
KIAA0232	9778	broad.mit.edu	36	4	6914025	6914025	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014743	exon7	c.G1015A	p.G339S	.	.	.
APC	324	broad.mit.edu	36	5	112202293	112202293	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.C3049T	p.Q1017X	.	.	.
PDGFRB	5159	broad.mit.edu	36	5	149475553	149475553	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002609	exon23	c.C3287T	p.A1096V	.	.	.
NDST1	3340	broad.mit.edu	36	5	149887950	149887950	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001543	exon3	c.C905T	p.T302M	.	.	.
SLIT3	6586	broad.mit.edu	36	5	168155094	168155094	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003062	exon10	c.C1003T	p.R335X	.	.	.
PRDM9	56979	broad.mit.edu	36	5	23562809	23562809	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020227	exon11	c.C1855T	p.R619W	.	.	.
CRHBP	1393	broad.mit.edu	36	5	76285253	76285253	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001882	exon2	c.G153C	p.E51D	.	.	.
NEDD9	4739	broad.mit.edu	36	6	11299359	11299359	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006403	exon5	c.C729T	p.F243F	.	.	.
TTLL2	83887	broad.mit.edu	36	6	167673646	167673646	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_031949	exon3	c.C268T	p.R90C	.	.	.
HIST1H2AL	8332	broad.mit.edu	36	6	27941210	27941210	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003511	exon1	c.A99T	p.R33R	.	.	.
OR5V1	81696	broad.mit.edu	36	6	29431424	29431424	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_030876	exon1	c.C528A	p.Y176X	.	.	.
NEU1	4758	broad.mit.edu	36	6	31937849	31937849	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000434	exon2	c.G258A	p.P86P	.	.	.
NFKBIE	4794	broad.mit.edu	36	6	44340775	44340775	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004556	exon1	c.G704C	p.R235P	.	.	.
OPN5	221391	broad.mit.edu	36	6	47871040	47871040	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_181744	exon4	c.G538A	p.G180R	.	.	.
CD109	135228	broad.mit.edu	36	6	74555028	74555028	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_133493	exon22	c.C2673T	p.G891G	.	.	.
ACHE	43	broad.mit.edu	36	7	100328809	100328809	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000665	exon2	c.G981T	p.R327R	.	.	.
GRM8	2918	broad.mit.edu	36	7	125960815	125960815	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127323	exon9	c.C1857T	p.R619R	.	.	.
AHR	196	broad.mit.edu	36	7	17341041	17341041	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001621	exon8	c.G914A	p.R305K	.	.	.
ELMO1	9844	broad.mit.edu	36	7	37348771	37348771	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014800	exon2	c.G49A	p.A17T	.	.	.
GLI3	2737	broad.mit.edu	36	7	42032469	42032469	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000168	exon8	c.C1096T	p.R366X	.	.	.
SAMD9	54809	broad.mit.edu	36	7	92570810	92570810	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001193307	exon2	c.G2537A	p.R846K	.	.	.
MCM7	4176	broad.mit.edu	36	7	99531678	99531678	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182776	exon10	c.C722G	p.A241G	.	.	.
MGC26647	219557	broad.mit.edu	36	7	88261671	88261671	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152706	exon2	c.522delT	p.F174fs	.	.	.
KCNQ3	3786	broad.mit.edu	36	8	133257027	133257027	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004519	exon5	c.C788T	p.T263M	.	.	.
CYP11B1	1584	broad.mit.edu	36	8	143954295	143954295	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001026213	exon6	c.C956T	p.T319M	.	.	.
DLGAP2	9228	broad.mit.edu	36	8	1614105	1614105	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004745	exon9	c.G2367A	p.S789S	.	.	.
TNFRSF10C	8794	broad.mit.edu	36	8	23030305	23030305	+	Missense_Mutation	SNP	C	A	A	rs12550828	by2Hit2Allele	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003841	exon5	c.C596A	p.T199N	.	.	.
CSMD1	64478	broad.mit.edu	36	8	3007130	3007130	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033225	exon38	c.C5803T	p.R1935X	.	.	.
STMN2	11075	broad.mit.edu	36	8	80739619	80739619	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007029	exon5	c.G495A	p.A165A	.	.	.
DCAF4L2	138009	broad.mit.edu	36	8	88954233	88954233	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152418	exon1	c.C1083T	p.N361N	.	.	.
NECAB1	64168	broad.mit.edu	36	8	92009655	92009655	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022351	exon8	c.G645T	p.M215I	.	.	.
CDH17	1015	broad.mit.edu	36	8	95230213	95230213	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001144663	exon14	c.G1862T	p.S621I	.	.	.
OR13C8	138802	broad.mit.edu	36	9	106371683	106371683	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004483	exon1	c.G414A	p.K138K	.	.	.
ROD1	9991	broad.mit.edu	36	9	114029651	114029651	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001163790	exon13	c.C1318T	p.L440F	.	.	.
FRMPD1	22844	broad.mit.edu	36	9	37730317	37730317	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014907	exon15	c.C1792T	p.R598C	.	.	.
PCSK5	5125	broad.mit.edu	36	9	77876626	77876626	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001190482	exon7	c.G886A	p.V296I	.	.	.
SEMA4D	10507	broad.mit.edu	36	9	91184312	91184312	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006378	exon18	c.G1716A	p.A572A	.	.	.
TSTD2	158427	broad.mit.edu	36	9	99408346	99408346	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_139246	exon7	c.G854T	p.G285V	.	.	.
FAM199X	139231	broad.mit.edu	36	X	103321080	103321080	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_207318	exon6	c.G1132T	p.E378X	.	.	.
ESX1	80712	broad.mit.edu	36	X	103385798	103385798	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_153448	exon2	c.G199A	p.V67I	.	.	.
ZNF280C	55609	broad.mit.edu	36	X	129177726	129177726	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017666	exon14	c.C1558T	p.Q520X	.	.	.
FAM127B	26071	broad.mit.edu	36	X	134013787	134013787	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001134321	exon1	c.G18C	p.Q6H	.	.	.
SAT1	6303	broad.mit.edu	36	X	23711974	23711974	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.