Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
XPNPEP1	7511	broad.mit.edu	36	10	111627751	111627751	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001167604	exon13	c.G1238A	p.R413H	.	.	.
CUBN	8029	broad.mit.edu	36	10	17030484	17030484	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001081	exon35	c.G5208A	p.S1736S	.	.	.
OR52L1	338751	broad.mit.edu	36	11	5964686	5964686	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005173	exon1	c.C51T	p.L17L	.	.	.
C12orf40	283461	broad.mit.edu	36	12	38364944	38364944	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001031748	exon10	c.T1295G	p.I432R	.	.	.
PDZRN4	29951	broad.mit.edu	36	12	40243670	40243670	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001164595	exon8	c.C1419T	p.N473N	.	.	.
ADAMTS20	80070	broad.mit.edu	36	12	42063957	42063957	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_025003	exon30	c.C4543T	p.Q1515X	.	.	.
ITGA5	3678	broad.mit.edu	36	12	53089643	53089643	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002205	exon3	c.C355T	p.R119W	.	.	.
INHBC	3626	broad.mit.edu	36	12	56115005	56115005	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005538	exon1	c.C69T	p.G23G	.	.	.
PLEKHG6	55200	broad.mit.edu	36	12	6296796	6296796	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001144857	exon7	c.C727A	p.R243R	.	.	.
A2M	2	broad.mit.edu	36	12	9137373	9137373	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000014	exon18	c.G2195A	p.R732Q	.	.	.
RNF17	56163	broad.mit.edu	36	13	24314206	24314206	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001184993	exon19	c.T2510C	p.V837A	.	.	.
FANCM	57697	broad.mit.edu	36	14	44714704	44714704	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020937	exon14	c.G2997A	p.P999P	.	.	.
KLHDC2	23588	broad.mit.edu	36	14	49318872	49318872	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014315	exon11	c.G991A	p.E331K	.	.	.
APBA2	321	broad.mit.edu	36	15	27154452	27154452	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005503	exon4	c.C988T	p.R330C	.	.	.
TGM7	116179	broad.mit.edu	36	15	41367066	41367066	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052955	exon5	c.G652A	p.D218N	.	.	.
CGNL1	84952	broad.mit.edu	36	15	55604212	55604212	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032866	exon12	c.C3010T	p.R1004X	.	.	.
MEFV	4210	broad.mit.edu	36	16	3244262	3244262	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000243	exon2	c.G807A	p.A269A	.	.	.
KRTAP4-12	83755	broad.mit.edu	36	17	36533688	36533688	+	Silent	SNP	A	G	G	rs28515113	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031854	exon1	c.T213C	p.C71C	.	.	.
XYLT2	64132	broad.mit.edu	36	17	45790635	45790635	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022167	exon10	c.C2010T	p.D670D	.	.	.
ZNF516	9658	broad.mit.edu	36	18	72283493	72283494	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014643	exon3	c.506_507insG	p.E169fs	.	.	.
KIAA1632	57724	broad.mit.edu	36	18	41789195	41789195	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020964	exon2	c.A171T	p.G57G	.	.	.
ZBTB7C	201501	broad.mit.edu	36	18	43810210	43810210	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001039360	exon3	c.G1279A	p.A427T	.	.	.
CEACAM20	125931	broad.mit.edu	36	19	49719942	49719942	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001102597	exon3	c.G389A	p.R130Q	.	.	.
PTPRS	5802	broad.mit.edu	36	19	5163221	5163221	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002850	exon32	c.G4810A	p.A1604T	.	.	.
NLRP4	147945	broad.mit.edu	36	19	61061822	61061822	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_134444	exon3	c.C1251T	p.D417D	.	.	.
RASAL2	9462	broad.mit.edu	36	1	176678929	176678929	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_170692	exon8	c.A1424G	p.N475S	.	.	.
CACNA1E	777	broad.mit.edu	36	1	179994612	179994612	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000721	exon32	c.C4590T	p.I1530I	.	.	.
PAX7	5081	broad.mit.edu	36	1	18890869	18890869	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013945	exon5	c.G615A	p.S205S	.	.	.
LAD1	3898	broad.mit.edu	36	1	199625040	199625041	+	Missense_Mutation	DNP	CT	TG	TG	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	CT	CT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005558	exon2	c.52_53CA	.	.	.	.
KCNQ4	9132	broad.mit.edu	36	1	41075998	41075998	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004700	exon13	c.C1820T	p.A607V	.	.	.
ELF3	1999	broad.mit.edu	36	1	200249689	200249689	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001114309	exon8	c.915delC	p.F305fs	.	.	.
LBP	3929	broad.mit.edu	36	20	36426812	36426812	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004139	exon8	c.G913A	p.D305N	.	.	.
LIME1	54923	broad.mit.edu	36	20	61840428	61840428	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017806	exon6	c.619delA	p.K207fs	.	.	.
SCN7A	6332	broad.mit.edu	36	2	167009621	167009621	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002976	exon12	c.A1523C	p.D508A	.	.	.
TTC31	64427	broad.mit.edu	36	2	74572863	74572863	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_022492	exon10	c.C1018T	p.R340W	.	.	.
TSGA10	80705	broad.mit.edu	36	2	99001440	99001440	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_025244	exon19	c.G1913A	p.R638H	.	.	.
STAB1	23166	broad.mit.edu	36	3	52521413	52521414	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015136	exon27	c.2900_2901insG	p.V967fs	.	.	.
LAMB2	3913	broad.mit.edu	36	3	49133674	49133674	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002292	exon32	c.A5386C	p.T1796P	.	.	.
C3orf63	23272	broad.mit.edu	36	3	56642460	56642460	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001112736	exon18	c.C3399T	p.L1133L	.	.	.
ROBO1	6091	broad.mit.edu	36	3	78749779	78749779	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002941	exon27	c.G3978A	p.A1326A	.	.	.
C4orf40	401137	broad.mit.edu	36	4	71059101	71059101	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_214711	exon3	c.G543T	p.E181D	.	.	.
RCHY1	25898	broad.mit.edu	36	4	76626876	76626876	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015436	exon9	c.C682T	p.R228X	.	.	.
PCDHB12	56124	broad.mit.edu	36	5	140570352	140570352	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018932	exon1	c.C1689T	p.Y563Y	.	.	.
GFPT2	9945	broad.mit.edu	36	5	179662161	179662161	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005110	exon18	c.C1872T	p.D624D	.	.	.
PLEKHG4B	153478	broad.mit.edu	36	5	214984	214984	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052909	exon10	c.C1506T	p.S502S	.	.	.
RXFP3	51289	broad.mit.edu	36	5	33972749	33972749	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016568	exon1	c.G147C	p.W49C	.	.	.
APC	324	broad.mit.edu	36	5	112203504	112203504	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.4260delA	p.T1420fs	.	.	.
TRIM41	90933	broad.mit.edu	36	5	180592474	180592474	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033549	exon3	c.1119delG	p.Q373fs	.	.	.
GPR126	57211	broad.mit.edu	36	6	142801169	142801169	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001032394	exon23	c.C3465T	p.T1155T	.	.	.
GRM1	2911	broad.mit.edu	36	6	146761832	146761832	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001114329	exon8	c.C1964A	p.T655N	.	.	.
C6orf127	340204	broad.mit.edu	36	6	35862753	35862753	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001010886	exon2	c.G100T	p.E34X	.	.	.
BAI3	577	broad.mit.edu	36	6	69405548	69405548	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001704	exon3	c.C260A	p.A87D	.	.	.
NAPEPLD	222236	broad.mit.edu	36	7	102547744	102547744	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198990	exon3	c.C457T	p.R153C	.	.	.
LRRN3	54674	broad.mit.edu	36	7	110551784	110551784	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018334	exon2	c.G1720C	p.D574H	.	.	.
THSD7A	221981	broad.mit.edu	36	7	11642798	11642798	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015204	exon2	c.C506A	p.A169E	.	.	.
DGKI	9162	broad.mit.edu	36	7	136804886	136804886	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004717	exon25	c.C2447T	p.P816L	.	.	.
WIPF3	644150	broad.mit.edu	36	7	29895454	29895454	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080529	exon6	c.C1257T	p.F419F	.	.	.
HECW1	23072	broad.mit.edu	36	7	43451600	43451600	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015052	exon11	c.G2304A	p.P768P	.	.	.
IKZF1	10320	broad.mit.edu	36	7	50435312	50435312	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006060	exon8	c.C1053A	p.H351Q	.	.	.
ANKIB1	54467	broad.mit.edu	36	7	91857238	91857238	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_019004	exon15	c.G1924T	p.D642Y	.	.	.
MBLAC1	255374	broad.mit.edu	36	7	99563268	99563268	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_203397	exon2	c.G314C	p.G105A	.	.	.
TNFRSF10C	8794	broad.mit.edu	36	8	23030305	23030305	+	Missense_Mutation	SNP	C	A	A	rs12550828	by2Hit2Allele	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003841	exon5	c.C596A	p.T199N	.	.	.
EYA1	2138	broad.mit.edu	36	8	72346596	72346596	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_172060	exon8	c.G818A	p.R273Q	.	.	.
NTNG2	84628	broad.mit.edu	36	9	134063389	134063389	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032536	exon3	c.C429T	p.Y143Y	.	.	.
FAM189A2	9413	broad.mit.edu	36	9	71193071	71193071	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004816	exon10	c.C1034T	p.S345F	.	.	.
PRUNE2	158471	broad.mit.edu	36	9	78512054	78512054	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015225	exon8	c.T4956G	p.H1652Q	.	.	.
FAM22F	54754	broad.mit.edu	36	9	96122614	96122614	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017561	exon5	c.G1065C	p.K355N	.	.	.
ARMCX1	51309	broad.mit.edu	36	X	100694831	100694831	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016608	exon4	c.C262T	p.P88S	.	.	.
SPANXC	64663	broad.mit.edu	36	X	140163484	140163484	+	Missense_Mutation	SNP	C	T	T	rs59800971	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022661	exon2	c.G126A	p.M42I	.	.	.
SPANXC	64663	broad.mit.edu	36	X	140163486	140163486	+	Missense_Mutation	SNP	T	G	G	rs57835830	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022661	exon2	c.A124C	p.M42L	.	.	.
FAM155B	27112	broad.mit.edu	36	X	68666141	68666141	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015686	exon3	c.T1036G	p.L346V	.	.	.
ZNF711	7552	broad.mit.edu	36	X	84396998	84396998	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021998	exon4	c.G157A	p.D53N	.	.	.