Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
ABCC2	1244	broad.mit.edu	36	10	101585871	101585871	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000392	exon25	c.C3448T	p.R1150C	.	.	.
SH3PXD2A	9644	broad.mit.edu	36	10	105353428	105353428	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014631	exon14	c.C1453T	p.R485C	.	.	.
ARMC3	219681	broad.mit.edu	36	10	23366260	23366260	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_173081	exon19	c.G2465C	p.R822T	.	.	.
RET	5979	broad.mit.edu	36	10	42933850	42933850	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020975	exon13	c.C2308T	p.R770X	.	.	.
C11orf63	79864	broad.mit.edu	36	11	122261954	122261954	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024806	exon2	c.C187T	p.R63X	.	.	.
C11orf41	25758	broad.mit.edu	36	11	33520713	33520713	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012194	exon1	c.G137T	p.G46V	.	.	.
OR4X1	390113	broad.mit.edu	36	11	48242197	48242197	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001004726	exon1	c.G209T	p.C70F	.	.	.
OR10AG1	282770	broad.mit.edu	36	11	55491852	55491852	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005491	exon1	c.G664T	p.A222S	.	.	.
TNKS1BP1	85456	broad.mit.edu	36	11	56832652	56832652	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033396	exon6	c.T4109C	p.V1370A	.	.	.
CLP1	10978	broad.mit.edu	36	11	57184079	57184079	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006831	exon2	c.G555A	p.V185V	.	.	.
PGA5	5222	broad.mit.edu	36	11	60772474	60772474	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	A	A	A	C	A	C	Unknown	Valid	Germline	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014224	exon6	c.A664C	p.K222Q	.	.	.
DCHS1	8642	broad.mit.edu	36	11	6611740	6611740	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003737	exon4	c.G2074T	p.A692S	.	.	.
OLFML1	283298	broad.mit.edu	36	11	7487468	7487468	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198474	exon3	c.C682G	p.H228D	.	.	.
NAALAD2	10003	broad.mit.edu	36	11	89525229	89525229	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005467	exon6	c.C725A	p.A242E	.	.	.
DENND5A	23258	broad.mit.edu	36	11	9128867	9128867	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015213	exon14	c.C2542T	p.R848C	.	.	.
SDSL	113675	broad.mit.edu	36	12	112360078	112360078	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138432	exon9	c.T801A	p.D267E	.	.	.
NOS1	4842	broad.mit.edu	36	12	116182708	116182708	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000620	exon14	c.C2312T	p.S771L	.	.	.
DNM1L	10059	broad.mit.edu	36	12	32751601	32751601	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012062	exon3	c.A284G	p.H95R	.	.	.
ASB8	140461	broad.mit.edu	36	12	46833467	46833467	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024095	exon2	c.C80T	p.A27V	.	.	.
KCNA1	3736	broad.mit.edu	36	12	4891072	4891072	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000217	exon2	c.C267T	p.F89F	.	.	.
KRT3	3850	broad.mit.edu	36	12	51475532	51475532	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_057088	exon1	c.G562A	p.D188N	.	.	.
GNS	2799	broad.mit.edu	36	12	63417086	63417086	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002076	exon9	c.C1063T	p.R355X	.	.	.
GRIP1	23426	broad.mit.edu	36	12	65135534	65135534	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001178074	exon10	c.C1120T	p.P374S	.	.	.
ZFC3H1	196441	broad.mit.edu	36	12	70343508	70343508	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_144982	exon1	c.A150T	p.L50F	.	.	.
UGGT2	55757	broad.mit.edu	36	13	95327970	95327970	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020121	exon28	c.A3370G	p.I1124V	.	.	.
NPAS3	64067	broad.mit.edu	36	14	32754179	32754179	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_022123	exon2	c.C91T	p.R31C	.	.	.
ATG14	22863	broad.mit.edu	36	14	54933877	54933877	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014924	exon2	c.C250T	p.R84X	.	.	.
SIX1	6495	broad.mit.edu	36	14	60183006	60183006	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005982	exon2	c.C603A	p.N201K	.	.	.
NGB	58157	broad.mit.edu	36	14	76802652	76802652	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_021257	exon4	c.C436T	p.R146X	.	.	.
FLRT2	23768	broad.mit.edu	36	14	85157930	85157930	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_013231	exon2	c.C319T	p.L107F	.	.	.
UBE3A	7337	broad.mit.edu	36	15	23167810	23167810	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_130839	exon6	c.G604A	p.E202K	.	.	.
RYR3	6263	broad.mit.edu	36	15	31680969	31680969	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001036	exon17	c.C1846A	p.Q616K	.	.	.
MAPKBP1	23005	broad.mit.edu	36	15	39893258	39893258	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014994	exon9	c.G967A	p.V323I	.	.	.
MAPKBP1	23005	broad.mit.edu	36	15	39894776	39894776	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014994	exon11	c.C1198T	p.Q400X	.	.	.
FBN1	2200	broad.mit.edu	36	15	46492096	46492096	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000138	exon65	c.C8188T	p.R2730W	.	.	.
FBN1	2200	broad.mit.edu	36	15	46492213	46492213	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000138	exon65	c.G8071C	p.G2691R	.	.	.
UNC13C	440279	broad.mit.edu	36	15	52626255	52626255	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001080534	exon25	c.C5740T	p.R1914X	.	.	.
CRAMP1L	57585	broad.mit.edu	36	16	1650039	1650039	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020825	exon10	c.C2387T	p.P796L	.	.	.
SRRM2	23524	broad.mit.edu	36	16	2752281	2752281	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016333	exon11	c.C1751T	p.S584F	.	.	.
CD2BP2	10421	broad.mit.edu	36	16	30273496	30273496	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006110	exon2	c.A8C	p.K3T	.	.	.
CNTNAP4	85445	broad.mit.edu	36	16	75081112	75081112	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033401	exon13	c.C1910T	p.T637M	.	.	.
MON1B	22879	broad.mit.edu	36	16	75782893	75782893	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014940	exon2	c.G10A	p.G4R	.	.	.
MBTPS1	8720	broad.mit.edu	36	16	82654507	82654507	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003791	exon19	c.C2476T	p.P826S	.	.	.
MYOCD	93649	broad.mit.edu	36	17	12607246	12607246	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001146312	exon14	c.C2521T	p.Q841X	.	.	.
MAPT	4137	broad.mit.edu	36	17	41395563	41395563	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016834	exon2	c.C24T	p.F8F	.	.	.
SDK2	54549	broad.mit.edu	36	17	68930090	68930090	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001144952	exon15	c.G1976A	p.R659H	.	.	.
TP53	7157	broad.mit.edu	36	17	7519267	7519267	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon5	c.C388T	p.L130F	 TP53,central_nervous_system,brain,Substitution - Missense,0 	.	.
TGIF1	7050	broad.mit.edu	36	18	3442223	3442223	+	Frame_Shift_Del	DEL	T	-	-	rs11571510	byCluster	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_170695	exon1	c.246delT	p.P82fs	.	.	.
U2AF2	11338	broad.mit.edu	36	19	60865717	60865718	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_007279	exon6	c.524_525insG	p.L175fs	.	.	.
OR10H5	284433	broad.mit.edu	36	19	15766323	15766323	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001004466	exon1	c.G465A	p.M155I	.	.	.
NFKBIB	4793	broad.mit.edu	36	19	44087943	44087943	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002503	exon3	c.T547G	p.S183A	.	.	.
RPS16	6217	broad.mit.edu	36	19	44616208	44616208	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001020	exon3	c.C184T	p.R62X	.	.	.
GRIK5	2901	broad.mit.edu	36	19	47238556	47238556	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002088	exon11	c.G1461A	p.E487E	.	.	.
ZNF808	388558	broad.mit.edu	36	19	57750389	57750389	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001039886	exon5	c.A2408T	p.N803I	.	.	.
ZNF628	89887	broad.mit.edu	36	19	60687134	60687134	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033113	exon3	c.A2750T	p.D917V	.	.	.
NLRP9	338321	broad.mit.edu	36	19	60935446	60935446	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_176820	exon2	c.G1563A	p.Q521Q	.	.	.
TNFSF14	8740	broad.mit.edu	36	19	6615993	6615993	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003807	exon5	c.C667T	p.R223C	.	.	.
RAB25	57111	broad.mit.edu	36	1	154302352	154302352	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020387	exon2	c.G70A	p.G24R	.	.	.
FCRL3	115352	broad.mit.edu	36	1	155933780	155933780	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052939	exon6	c.C618A	p.P206P	.	.	.
FCRL3	115352	broad.mit.edu	36	1	155934185	155934185	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052939	exon5	c.C447A	p.I149I	.	.	.
CENPF	1063	broad.mit.edu	36	1	212882942	212882942	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016343	exon12	c.G4638A	p.A1546A	.	.	.
TAF1A	9015	broad.mit.edu	36	1	220801350	220801350	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005681	exon10	c.G1219A	p.A407T	.	.	.
NVL	4931	broad.mit.edu	36	1	222490877	222490877	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002533	exon20	c.G2320A	p.V774I	.	.	.
CSMD2	114784	broad.mit.edu	36	1	33840611	33840611	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_052896	exon44	c.C6661T	p.R2221C	.	.	.
ZMYM4	9202	broad.mit.edu	36	1	35631865	35631865	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005095	exon18	c.C2849T	p.P950L	.	.	.
KANK4	163782	broad.mit.edu	36	1	62511615	62511615	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_181712	exon3	c.G1749A	p.P583P	.	.	.
PTBP2	58155	broad.mit.edu	36	1	96961709	96961709	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021190	exon2	c.A10G	p.I4V	.	.	.
SON	6651	broad.mit.edu	36	21	33846283	33846283	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032195	exon3	c.C2876T	p.T959I	.	.	.
CECR2	27443	broad.mit.edu	36	22	16401605	16401605	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031413	exon14	c.G1898A	p.R633Q	.	.	.
CELSR1	9620	broad.mit.edu	36	22	45186194	45186194	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014246	exon6	c.G4738A	p.A1580T	.	.	.
EPB41L5	57669	broad.mit.edu	36	2	120641997	120641997	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020909	exon24	c.A2079T	p.K693N	.	.	.
TUBA3D	113457	broad.mit.edu	36	2	131954464	131954464	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_080386	exon4	c.G728A	p.R243Q	.	.	.
THSD7B	80731	broad.mit.edu	36	2	137530682	137530682	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001080427	exon2	c.G269A	p.R90H	.	.	.
ZEB2	9839	broad.mit.edu	36	2	144873348	144873348	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001171653	exon7	c.G1804A	p.G602R	.	.	.
SCN2A	6326	broad.mit.edu	36	2	165874146	165874146	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_021007	exon6	c.C644T	p.A215V	.	.	.
MAP2	4133	broad.mit.edu	36	2	210268814	210268814	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002374	exon7	c.C3675A	p.I1225I	.	.	.
MYL1	4632	broad.mit.edu	36	2	210887946	210887946	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_079420	exon1	c.G66A	p.P22P	.	.	.
ERBB4	2066	broad.mit.edu	36	2	212286546	212286546	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005235	exon8	c.G956A	p.G319E	.	.	.
SLC8A1	6546	broad.mit.edu	36	2	40509633	40509633	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001112800	exon1	c.G1292A	p.R431H	.	.	.
NRXN1	9378	broad.mit.edu	36	2	50002705	50002705	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_138735	exon6	c.C1210T	p.R404X	.	.	.
STAG1	10274	broad.mit.edu	36	3	137722897	137722897	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005862	exon7	c.G524T	p.R175L	.	.	.
NAALADL2	254827	broad.mit.edu	36	3	176667557	176667557	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_207015	exon8	c.G1424A	p.R475H	.	.	.
FHIT	2272	broad.mit.edu	36	3	59883171	59883171	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002012	exon8	c.G289A	p.V97I	.	.	.
STOX2	56977	broad.mit.edu	36	4	185169081	185169081	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020225	exon3	c.G2096T	p.S699I	.	.	.
CORIN	10699	broad.mit.edu	36	4	47300235	47300235	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006587	exon20	c.G2748A	p.P916P	.	.	.
CYTL1	54360	broad.mit.edu	36	4	5069497	5069497	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018659	exon3	c.G294T	p.K98N	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13812065	13812065	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001369	exon61	c.C10309A	p.H3437N	.	.	.
PCDHA2	56146	broad.mit.edu	36	5	140154933	140154933	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018905	exon1	c.C200T	p.A67V	.	.	.
SH3TC2	79628	broad.mit.edu	36	5	148407739	148407739	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024577	exon3	c.C158T	p.T53I	.	.	.
FBXL7	23194	broad.mit.edu	36	5	15989735	15989735	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012304	exon4	c.C916T	p.R306C	.	.	.
LIFR	3977	broad.mit.edu	36	5	38566491	38566491	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127671	exon2	c.G16A	p.V6I	.	.	.
ROS1	6098	broad.mit.edu	36	6	117754161	117754161	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002944	exon33	c.T5476C	p.F1826L	.	.	.
LAMA2	3908	broad.mit.edu	36	6	129827282	129827282	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001079823	exon50	c.C7147T	p.R2383X	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152686348	152686348	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033071	exon81	c.C15662T	p.P5221L	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152798875	152798875	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033071	exon33	c.G4225A	p.E1409K	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152873094	152873094	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033071	exon8	c.C529T	p.R177W	.	.	.
PNLDC1	154197	broad.mit.edu	36	6	160154655	160154655	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173516	exon12	c.G939A	p.S313S	.	.	.
PDE10A	10846	broad.mit.edu	36	6	165721823	165721823	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006661	exon18	c.C1736T	p.S579F	.	.	.
DST	667	broad.mit.edu	36	6	56507921	56507921	+	Silent	SNP	C	G	G	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015548	exon44	c.G9030C	p.S3010S	.	.	.
EPHA7	2045	broad.mit.edu	36	6	94009973	94009973	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004440	exon17	c.G2889T	p.V963V	.	.	.
TMEM176B	28959	broad.mit.edu	36	7	150129382	150129383	+	Splice_Site	INS	-	G	G	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
LAMB1	3912	broad.mit.edu	36	7	107413954	107413954	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002291	exon6	c.G514A	p.A172T	.	.	.
RBM28	55131	broad.mit.edu	36	7	127762900	127762900	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001166135	exon4	c.C456T	p.S152S	.	.	.
TBX20	57057	broad.mit.edu	36	7	35254872	35254872	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001077653	exon3	c.G487A	p.A163T	.	.	.
COL1A2	1278	broad.mit.edu	36	7	93887656	93887656	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000089	exon36	c.C2151T	p.V717V	.	.	.
ARPC1A	10552	broad.mit.edu	36	7	98784443	98784443	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001190996	exon5	c.G383A	p.R128H	.	.	.
ZNF703	80139	broad.mit.edu	36	8	37675244	37675245	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025069	exon2	c.1667_1668insG	p.A556fs	.	.	.
PRSS55	203074	broad.mit.edu	36	8	10427847	10427847	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001197020	exon4	c.C620T	p.T207M	.	.	.
OXR1	55074	broad.mit.edu	36	8	107764689	107764689	+	Silent	SNP	C	G	G	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_181354	exon3	c.C369G	p.S123S	.	.	.
WDR67	93594	broad.mit.edu	36	8	124190943	124190943	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145647	exon10	c.G1338T	p.A446A	.	.	.
BMP1	649	broad.mit.edu	36	8	22108227	22108227	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006129	exon12	c.G1489A	p.D497N	.	.	.
TRIM55	84675	broad.mit.edu	36	8	67228951	67228951	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_184085	exon9	c.G1352A	p.R451Q	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77853077	77853077	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024721	exon4	c.G3172T	p.V1058F	.	.	.
PTPN3	5774	broad.mit.edu	36	9	111265482	111265482	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002829	exon2	c.G54T	p.S18S	.	.	.
TNFSF8	944	broad.mit.edu	36	9	116707964	116707964	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001244	exon3	c.G275A	p.R92K	.	.	.
PRDM12	59335	broad.mit.edu	36	9	132533423	132533423	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_021619	exon3	c.C472T	p.R158W	.	.	.
SARDH	1757	broad.mit.edu	36	9	135585069	135585069	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_007101	exon5	c.G752A	p.R251Q	.	.	.
FRMD3	257019	broad.mit.edu	36	9	85095442	85095442	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_174938	exon13	c.G1091A	p.R364H	.	.	.
SEMA4D	10507	broad.mit.edu	36	9	91197211	91197211	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001142287	exon10	c.G569A	p.R190Q	.	.	.
ASPN	54829	broad.mit.edu	36	9	94276751	94276751	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001193335	exon2	c.C250A	p.R84R	.	.	.
TAF7L	54457	broad.mit.edu	36	X	100434584	100434584	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024885	exon1	c.G106A	p.D36N	.	.	.
ODZ1	10178	broad.mit.edu	36	X	123925212	123925212	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014253	exon1	c.C72A	p.T24T	.	.	.
HTATSF1	27336	broad.mit.edu	36	X	135421558	135421558	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014500	exon9	c.C1988T	p.A663V	.	.	.
MAGEC1	9947	broad.mit.edu	36	X	140823604	140823604	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005462	exon4	c.G2748A	p.A916A	.	.	.
NHS	4810	broad.mit.edu	36	X	17652465	17652465	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001136024	exon6	c.G703T	p.E235X	.	.	.
ARSF	416	broad.mit.edu	36	X	3040423	3040423	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004042	exon11	c.G1599A	p.K533K	.	.	.
TBC1D25	4943	broad.mit.edu	36	X	48303321	48303321	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002536	exon6	c.C1081T	p.R361C	.	.	.
WNK3	65267	broad.mit.edu	36	X	54293273	54293273	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001002838	exon16	c.G2592C	p.Q864H	.	.	.
TBL1X	6907	broad.mit.edu	36	X	9620260	9620260	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001139468	exon9	c.C704T	p.P235L	.	.	.