Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target HPS1 3257 broad.mit.edu 36 10 100192979 100192979 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182639 exon3 c.C9T p.C3C . . . CNNM1 26507 broad.mit.edu 36 10 101137575 101137575 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020348 exon8 c.G2349A p.R783R . . . PDZD7 79955 broad.mit.edu 36 10 102767890 102767890 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001195263 exon9 c.G1478T p.S493I . . . TMEM180 79847 broad.mit.edu 36 10 104223464 104223464 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024789 exon8 c.G1073T p.S358I . . . TRIM8 81603 broad.mit.edu 36 10 104406645 104406645 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030912 exon6 c.C1200T p.Y400Y . . . COL17A1 1308 broad.mit.edu 36 10 105791077 105791077 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000494 exon38 c.G2621A p.G874D . . . USP6NL 9712 broad.mit.edu 36 10 11567065 11567065 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014688 exon13 c.C836T p.T279I . . . KIAA1598 57698 broad.mit.edu 36 10 118701501 118701501 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018330 exon6 c.G443A p.R148Q . . . MKI67 4288 broad.mit.edu 36 10 129795796 129795796 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145966 exon12 c.C3218T p.A1073V . . . DPYSL4 10570 broad.mit.edu 36 10 133865494 133865494 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006426 exon11 c.G1165A p.A389T . . . FAM107B 83641 broad.mit.edu 36 10 14856466 14856466 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031453 exon1 c.G203A p.S68N . . . CUBN 8029 broad.mit.edu 36 10 16997164 16997164 + Silent SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001081 exon47 c.C7224A p.G2408G . . . PIP4K2A 5305 broad.mit.edu 36 10 22868906 22868906 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005028 exon9 c.C1140T p.G380G . . . KIAA1217 56243 broad.mit.edu 36 10 24548627 24548627 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019590 exon2 c.G137A p.R46H . . . SVIL 6840 broad.mit.edu 36 10 29802869 29802869 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003174 exon28 c.C4155T p.C1385C . . . MTPAP 55149 broad.mit.edu 36 10 30642724 30642724 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018109 exon9 c.G1569A p.R523R . . . FZD8 8325 broad.mit.edu 36 10 35969119 35969119 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031866 exon1 c.G1245A p.V415V . . . BMS1 9790 broad.mit.edu 36 10 42635769 42635769 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014753 exon16 c.G2660A p.R887H . . . CSGALNACT2 55454 broad.mit.edu 36 10 42971100 42971100 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018590 exon2 c.A497G p.H166R . . . ZNF485 220992 broad.mit.edu 36 10 43432135 43432135 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145312 exon5 c.C638A p.P213H . . . RASSF4 83937 broad.mit.edu 36 10 44806404 44806404 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032023 exon9 c.C688T p.R230W . . . OGDHL 55753 broad.mit.edu 36 10 50622130 50622130 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143996 exon13 c.G1606A p.A536T . . . AGAP7 653268 broad.mit.edu 36 10 51142588 51142588 + Missense_Mutation SNP A C C rs2338457 unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077685 exon4 c.T398G p.I133S . . . FAM21A 387680 broad.mit.edu 36 10 51499315 51499315 + Silent SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005751 exon3 c.A129G p.L43L . . . PCDH15 65217 broad.mit.edu 36 10 55450170 55450170 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142767 exon19 c.G2428A p.D810N . . . FAM13C 220965 broad.mit.edu 36 10 60682606 60682606 + Silent SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143773 exon13 c.A1242G p.K414K . . . EGR2 1959 broad.mit.edu 36 10 64243919 64243919 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000399 exon2 c.A485C p.D162A . . . JMJD1C 221037 broad.mit.edu 36 10 64638182 64638182 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004241 exon7 c.C2596A p.P866T . . . ADAMTS14 140766 broad.mit.edu 36 10 72183571 72183571 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080722 exon19 c.G2739A p.T913T . . . CBARA1 10367 broad.mit.edu 36 10 73963523 73963523 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006077 exon5 c.G524A p.R175H . . . USP54 159195 broad.mit.edu 36 10 74949716 74949716 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152586 exon17 c.G2523A p.T841T . . . ITIH5 80760 broad.mit.edu 36 10 7648147 7648147 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030569 exon13 c.C2379T p.N793N . . . DYDC2 84332 broad.mit.edu 36 10 82116577 82116577 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032372 exon5 c.G424A p.A142T . . . LARP4B 23185 broad.mit.edu 36 10 849113 849113 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015155 exon17 c.C1970T p.T657M . . . LGI1 9211 broad.mit.edu 36 10 95546992 95546992 + Silent SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005097 exon8 c.C1116A p.S372S . . . PLCE1 51196 broad.mit.edu 36 10 95882076 95882076 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001165979 exon2 c.C438T p.R146R . . . CYP2C19 1557 broad.mit.edu 36 10 96524935 96524935 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000769 exon2 c.T299G p.F100C . . . PAOX 196743 broad.mit.edu 36 10 135043845 135043845 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_152911 exon2 c.534delG p.K178fs . . . IFIT1 3434 broad.mit.edu 36 10 91153013 91153013 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001548 exon2 c.1001delA p.E334fs . . . EIF4G2 1982 broad.mit.edu 36 11 10779110 10779110 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001418 exon15 c.G1514A p.R505H . . . KDELC2 143888 broad.mit.edu 36 11 107855340 107855340 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153705 exon6 c.G1191A p.S397S . . . EXPH5 23086 broad.mit.edu 36 11 107888208 107888208 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015065 exon6 c.A3236T p.N1079I . . . ALG9 79796 broad.mit.edu 36 11 111216612 111216612 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024740 exon10 c.C1150T p.R384C . . . TIMM8B 26521 broad.mit.edu 36 11 111461296 111461296 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012459 exon2 c.G230A p.R77H . . . DKK3 27122 broad.mit.edu 36 11 11946532 11946532 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001018057 exon4 c.C514T p.R172W . . . DKK3 27122 broad.mit.edu 36 11 11976879 11976879 + Silent SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001018057 exon3 c.A375G p.Q125Q . . . SORL1 6653 broad.mit.edu 36 11 120990895 120990895 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003105 exon41 c.G5525A p.R1842H . . . MICAL2 9645 broad.mit.edu 36 11 12186152 12186152 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014632 exon5 c.G479A p.R160H . . . NTM 50863 broad.mit.edu 36 11 131286691 131286691 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144058 exon1 c.G106A p.A36T . . . OPCML 4978 broad.mit.edu 36 11 132032381 132032381 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012393 exon3 c.C190T p.R64C . . . PDE3B 5140 broad.mit.edu 36 11 14837292 14837292 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000922 exon13 c.G2648A p.R883H . . . SOX6 55553 broad.mit.edu 36 11 16296649 16296649 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033326 exon3 c.C364T p.R122C . . . TMEM86A 144110 broad.mit.edu 36 11 18679989 18679989 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153347 exon3 c.G580A p.A194T . . . SLC6A5 9152 broad.mit.edu 36 11 20579767 20579767 + De_novo_Start_OutOfFrame SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004211 exon2 c.G520A p.V174M . . . LUZP2 338645 broad.mit.edu 36 11 24707399 24707399 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001009909 exon2 c.C171T p.V57V . . . LGR4 55366 broad.mit.edu 36 11 27346272 27346272 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018490 exon18 c.C2574T p.C858C . . . KCNA4 3739 broad.mit.edu 36 11 29989302 29989302 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002233 exon2 c.G1500T p.E500D . . . KCNA4 3739 broad.mit.edu 36 11 29989799 29989799 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002233 exon2 c.G1003A p.D335N . . . ELP4 26610 broad.mit.edu 36 11 31761587 31761587 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019040 exon10 c.C1214T p.A405V . . . CCDC73 493860 broad.mit.edu 36 11 32594235 32594235 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008391 exon15 c.A1202T p.N401I . . . LDLRAD3 143458 broad.mit.edu 36 11 36205411 36205411 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174902 exon5 c.C655T p.R219C . . . ALX4 60529 broad.mit.edu 36 11 44253598 44253598 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021926 exon2 c.G653A p.R218Q . . . PHF21A 51317 broad.mit.edu 36 11 45943545 45943545 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001101802 exon9 c.C890T p.T297M . . . NDUFS3 4722 broad.mit.edu 36 11 47558994 47558994 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004551 exon4 c.T263A p.I88N . . . OR51A7 119687 broad.mit.edu 36 11 4885881 4885881 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004749 exon1 c.G706A p.A236T . . . OR4D6 219983 broad.mit.edu 36 11 58981798 58981798 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004708 exon1 c.G789A p.M263I . . . OR56A4 120793 broad.mit.edu 36 11 5980698 5980698 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005179 exon1 c.T257A p.L86H . . . DDB1 1642 broad.mit.edu 36 11 60853628 60853628 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001923 exon4 c.G332A p.R111H . . . CNGA4 1262 broad.mit.edu 36 11 6218347 6218347 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001037329 exon4 c.C747T p.G249G . . . SYVN1 84447 broad.mit.edu 36 11 64655194 64655194 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032431 exon9 c.G809A p.R270H . . . CTSW 1521 broad.mit.edu 36 11 65406524 65406524 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001335 exon5 c.G489T p.E163D . . . OR2AG2 338755 broad.mit.edu 36 11 6746438 6746438 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004490 exon1 c.C327T p.S109S . . . INPPL1 3636 broad.mit.edu 36 11 71617450 71617450 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001567 exon4 c.G429A p.P143P . . . ARRB1 408 broad.mit.edu 36 11 74657648 74657648 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020251 exon13 c.C1002T p.D334D . . . C11orf30 56946 broad.mit.edu 36 11 75934546 75934546 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020193 exon20 c.C3331T p.R1111C . . . PPFIBP2 8495 broad.mit.edu 36 11 7610706 7610706 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003621 exon12 c.G1101A p.G367G . . . FAT3 120114 broad.mit.edu 36 11 92173786 92173786 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008781 exon9 c.C7959T p.I2653I . . . MAML2 84441 broad.mit.edu 36 11 95364504 95364504 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032427 exon3 c.G2171T p.G724V . . . MAP3K11 4296 broad.mit.edu 36 11 65123610 65123610 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002419 exon9 c.2037delC p.P679fs . . . TBC1D10C 374403 broad.mit.edu 36 11 66933141 66933141 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_198517 exon9 c.954delC p.I318fs . . . GTF2H3 2967 broad.mit.edu 36 12 122689814 122689815 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001516 exon2 c.64_65insG p.W22fs . . . CLEC12A 160364 broad.mit.edu 36 12 10015550 10015550 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138337 exon1 c.A88G p.K30E . . . STAB2 55576 broad.mit.edu 36 12 102668545 102668545 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017564 exon60 c.C6497A p.P2166Q . . . TDG 6996 broad.mit.edu 36 12 102900830 102900830 + Missense_Mutation SNP A C C rs61937630 unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A A A A Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_003211 exon5 c.A602C p.K201T . . . RFX4 5992 broad.mit.edu 36 12 105627320 105627320 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032491 exon5 c.C634T p.R212X . . . OAS3 4940 broad.mit.edu 36 12 111871297 111871297 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006187 exon6 c.G1278A p.P426P . . . TPCN1 53373 broad.mit.edu 36 12 112191996 112191996 + Silent SNP G C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017901 exon7 c.G711C p.L237L . . . PLBD2 196463 broad.mit.edu 36 12 112297066 112297066 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001159727 exon5 c.T730C p.C244R . . . MED13L 23389 broad.mit.edu 36 12 114942129 114942129 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015335 exon6 c.G657A p.T219T . . . CCDC64 92558 broad.mit.edu 36 12 118920773 118920773 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207311 exon2 c.C495T p.G165G . . . HPD 3242 broad.mit.edu 36 12 120776994 120776994 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002150 exon7 c.A412G p.T138A . . . CLIP1 6249 broad.mit.edu 36 12 121323565 121323565 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198240 exon24 c.G3989A p.R1330H . . . DNAH10 196385 broad.mit.edu 36 12 122932226 122932226 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_207437 exon50 c.G8382T p.M2794I . . . MANSC1 54682 broad.mit.edu 36 12 12374685 12374685 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018050 exon4 c.C839T p.T280M . . . TMEM132D 121256 broad.mit.edu 36 12 128260124 128260124 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133448 exon5 c.A1337G p.K446R . . . GRIN2B 2904 broad.mit.edu 36 12 13659844 13659844 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000834 exon6 c.G1350A p.P450P . . . ARHGDIB 397 broad.mit.edu 36 12 14992093 14992093 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001175 exon4 c.G323T p.R108I . . . CACNA2D4 93589 broad.mit.edu 36 12 1780503 1780503 + Silent SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172364 exon31 c.T2835C p.S945S . . . CACNA2D4 93589 broad.mit.edu 36 12 1894335 1894335 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172364 exon2 c.C255T p.G85G . . . SLC6A13 6540 broad.mit.edu 36 12 200491 200491 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190997 exon13 c.C1417T p.R473C . . . C12orf77 196415 broad.mit.edu 36 12 25040202 25040202 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001101339 exon3 c.G213A p.T71T . . . PPFIBP1 8496 broad.mit.edu 36 12 27721272 27721272 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003622 exon19 c.C1591T p.R531X . . . KLHDC5 57542 broad.mit.edu 36 12 27835963 27835963 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020782 exon2 c.G928A p.A310T . . . PDZRN4 29951 broad.mit.edu 36 12 40253613 40253613 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164595 exon10 c.G2765A p.R922Q . . . TWF1 5756 broad.mit.edu 36 12 42479520 42479520 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002822 exon5 c.C533A p.P178H . . . FGF23 8074 broad.mit.edu 36 12 4352122 4352122 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020638 exon2 c.G214T p.A72S . . . SRSF2IP 9169 broad.mit.edu 36 12 44602160 44602160 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004719 exon15 c.C4330T p.R1444W . . . MLL2 8085 broad.mit.edu 36 12 47732104 47732104 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003482 exon10 c.G1629A p.S543S . . . DNAJC22 79962 broad.mit.edu 36 12 48031484 48031484 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024902 exon3 c.T958C p.F320L . . . SPATS2 65244 broad.mit.edu 36 12 48180177 48180177 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023071 exon9 c.G761A p.R254Q . . . AQP5 362 broad.mit.edu 36 12 48642359 48642359 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001651 exon1 c.G292A p.A98T . . . ACCN2 41 broad.mit.edu 36 12 48758132 48758132 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020039 exon5 c.C792T p.G264G . . . SLC11A2 4891 broad.mit.edu 36 12 49674607 49674607 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001174125 exon11 c.A1151G p.D384G . . . BIN2 51411 broad.mit.edu 36 12 49983139 49983139 + Silent SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016293 exon3 c.A216G p.K72K . . . KCNA5 3741 broad.mit.edu 36 12 5024594 5024594 + Silent SNP C T T rs72546671 unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002234 exon1 c.C1020T p.L340L . . . ACVRL1 94 broad.mit.edu 36 12 50596195 50596195 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077401 exon7 c.G1157A p.R386H . . . KRT77 374454 broad.mit.edu 36 12 51382955 51382955 + Silent SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175078 exon1 c.C531A p.S177S . . . HOXC12 3228 broad.mit.edu 36 12 52636420 52636420 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173860 exon2 c.C652T p.R218C . . . SLC16A7 9194 broad.mit.edu 36 12 58454827 58454827 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004731 exon4 c.G484A p.A162T . . . MON2 23041 broad.mit.edu 36 12 61205161 61205161 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015026 exon10 c.G1140A p.Q380Q . . . DPY19L2 283417 broad.mit.edu 36 12 62240637 62240637 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173812 exon22 c.C2199T p.S733S . . . GRIP1 23426 broad.mit.edu 36 12 65135465 65135465 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001178074 exon10 c.A1189C p.K397Q . . . ACRBP 84519 broad.mit.edu 36 12 6619779 6619779 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032489 exon7 c.C1248T p.I416I . . . DYRK2 8445 broad.mit.edu 36 12 66337287 66337287 + Silent SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003583 exon2 c.T114C p.L38L . . . PTPRB 5787 broad.mit.edu 36 12 69267108 69267108 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001109754 exon9 c.G2257A p.V753I . . . PTPN6 5777 broad.mit.edu 36 12 6934287 6934287 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002831 exon4 c.G385A p.E129K . . . ACSS3 79611 broad.mit.edu 36 12 80052855 80052855 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024560 exon3 c.A586C p.S196R . . . SLC6A15 55117 broad.mit.edu 36 12 83794426 83794426 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182767 exon6 c.G848A p.R283H . . . A2M 2 broad.mit.edu 36 12 9153882 9153882 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000014 exon6 c.G521A p.R174H . . . PLXNC1 10154 broad.mit.edu 36 12 93197434 93197434 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005761 exon22 c.G3653A p.R1218Q . . . ANO4 121601 broad.mit.edu 36 12 99997168 99997168 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178826 exon14 c.A1274G p.D425G . . . SETD1B 23067 broad.mit.edu 36 12 120727041 120727041 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015048 exon1 c.15delC p.H5fs . . . POU6F1 5463 broad.mit.edu 36 12 49870473 49870473 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002702 exon6 c.730delC p.Q244fs . . . LTBR 4055 broad.mit.edu 36 12 6363811 6363811 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002342 exon1 c.26delC p.A9fs . . . PLEKHA9 51054 broad.mit.edu 36 12 43853361 43853361 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . FGF14 2259 broad.mit.edu 36 13 101173234 101173234 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175929 exon5 c.C707T p.A236V . . . ING1 3621 broad.mit.edu 36 13 110170143 110170143 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198219 exon2 c.T703C p.W235R . . . ZMYM2 7750 broad.mit.edu 36 13 19539083 19539083 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_197968 exon20 c.C3225T p.G1075G . . . EFHA1 221154 broad.mit.edu 36 13 20993388 20993388 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152726 exon6 c.T593G p.F198C . . . LNX2 222484 broad.mit.edu 36 13 27041253 27041253 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153371 exon3 c.C568T p.R190W . . . PAN3 255967 broad.mit.edu 36 13 27732683 27732683 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175854 exon8 c.C1348T p.R450X . . . FLT1 2321 broad.mit.edu 36 13 27906056 27906056 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002019 exon6 c.G713A p.R238H . . . PDS5B 23047 broad.mit.edu 36 13 32242297 32242297 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015032 exon32 c.C3663T p.P1221P . . . NBEA 26960 broad.mit.edu 36 13 35139642 35139642 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015678 exon56 c.C8533T p.R2845X . . . DCLK1 9201 broad.mit.edu 36 13 35584117 35584117 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004734 exon3 c.G612A p.L204L . . . COG6 57511 broad.mit.edu 36 13 39196682 39196682 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145079 exon17 c.C1730T p.T577I . . . NEK5 341676 broad.mit.edu 36 13 51537604 51537604 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199289 exon22 c.C2067T p.S689S . . . KLF12 11278 broad.mit.edu 36 13 73167762 73167762 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007249 exon8 c.G1075A p.A359T . . . SLITRK6 84189 broad.mit.edu 36 13 85266391 85266391 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032229 exon2 c.G2254A p.A752T . . . IPO5 3843 broad.mit.edu 36 13 97471378 97471378 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002271 exon28 c.G3251A p.R1084H . . . AMN 81693 broad.mit.edu 36 14 102458820 102458820 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_030943 exon1 c.C42T p.C14C . . . RPGRIP1 57096 broad.mit.edu 36 14 20864107 20864107 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020366 exon16 c.C2645A p.P882H . . . SLC22A17 51310 broad.mit.edu 36 14 22891090 22891090 + De_novo_Start_OutOfFrame SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020372 exon1 c.G174A p.S58S . . . NFATC4 4776 broad.mit.edu 36 14 23912752 23912752 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001136022 exon6 c.C1760T p.A587V . . . COCH 1690 broad.mit.edu 36 14 30424387 30424387 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004086 exon10 c.C770T p.T257M . . . HEATR5A 25938 broad.mit.edu 36 14 30897958 30897958 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015473 exon9 c.C1249T p.Q417X . . . FAM179B 23116 broad.mit.edu 36 14 44501738 44501738 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015091 exon1 c.C364T p.R122W . . . FANCM 57697 broad.mit.edu 36 14 44675112 44675112 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020937 exon1 c.C128T p.P43L . . . SOS2 6655 broad.mit.edu 36 14 49717146 49717146 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006939 exon7 c.A863G p.Q288R . . . ERO1L 30001 broad.mit.edu 36 14 52202929 52202929 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014584 exon7 c.G543A p.L181L . . . SYT16 83851 broad.mit.edu 36 14 61532955 61532955 + Silent SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031914 exon1 c.A465G p.Q155Q . . . SYNE2 23224 broad.mit.edu 36 14 63588077 63588077 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015180 exon48 c.G7693A p.A2565T . . . SPTB 6710 broad.mit.edu 36 14 64341454 64341454 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001024858 exon2 c.C256T p.R86C . . . SLC39A9 55334 broad.mit.edu 36 14 68994940 68994940 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018375 exon7 c.C801T p.G267G . . . PCNX 22990 broad.mit.edu 36 14 70514510 70514510 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014982 exon6 c.G1703A p.R568Q . . . DCAF4 26094 broad.mit.edu 36 14 72482453 72482453 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181341 exon5 c.T460G p.F154V . . . NRXN3 9369 broad.mit.edu 36 14 79003370 79003370 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138970 exon2 c.C301T p.P101S . . . RPS6KA5 9252 broad.mit.edu 36 14 90426593 90426593 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004755 exon14 c.C1827T p.G609G . . . CLMN 79789 broad.mit.edu 36 14 94739215 94739215 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_024734 exon9 c.G2224A p.A742T . . . CLMN 79789 broad.mit.edu 36 14 94740352 94740352 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024734 exon9 c.C1087T p.R363C . . . GLRX5 51218 broad.mit.edu 36 14 95080089 95080089 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016417 exon2 c.C348T p.G116G . . . INF2 64423 broad.mit.edu 36 14 104240802 104240803 + Frame_Shift_Del DEL GC - - novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 GC GC Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032714 exon4 c.633_634del p.211_212del . . . RNF31 55072 broad.mit.edu 36 14 23699604 23699604 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_017999 exon21 c.3201delC p.I1067fs . . . MPP5 64398 broad.mit.edu 36 14 66853365 66853365 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_022474 exon10 c.1289delA p.E430fs . . . CSPG4 1464 broad.mit.edu 36 15 73755597 73755598 + Frame_Shift_Ins INS - C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001897 exon10 c.6318_6319insG p.G2106fs . . . MAGEL2 54551 broad.mit.edu 36 15 21441737 21441737 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019066 exon1 c.G2246A p.R749H . . . UBE3A 7337 broad.mit.edu 36 15 23150770 23150770 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130839 exon10 c.C2278T p.R760W . . . RYR3 6263 broad.mit.edu 36 15 31902558 31902558 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001036 exon81 c.T11065G p.S3689A . . . THBS1 7057 broad.mit.edu 36 15 37673109 37673109 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003246 exon19 c.C3215A p.P1072H . . . EIF2AK4 440275 broad.mit.edu 36 15 38108908 38108908 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013703 exon34 c.C4512T p.S1504S . . . BUB1B 701 broad.mit.edu 36 15 38264829 38264829 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001211 exon7 c.T923C p.L308P . . . PLCB2 5330 broad.mit.edu 36 15 38370080 38370080 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004573 exon29 c.G3199A p.A1067T . . . PLA2G4E 123745 broad.mit.edu 36 15 40082153 40082153 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080490 exon5 c.C513T p.G171G . . . CCNDBP1 23582 broad.mit.edu 36 15 41269573 41269573 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012142 exon5 c.C360T p.G120G . . . ZSCAN29 146050 broad.mit.edu 36 15 41443759 41443759 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152455 exon4 c.G1336A p.A446T . . . ZNF280D 54816 broad.mit.edu 36 15 54758170 54758170 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017661 exon11 c.G1146A p.T382T . . . CA12 771 broad.mit.edu 36 15 61424738 61424738 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001218 exon4 c.C420T p.F140F . . . DPP8 54878 broad.mit.edu 36 15 63553607 63553607 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017743 exon12 c.G1529A p.G510E . . . CCDC33 80125 broad.mit.edu 36 15 72409626 72409626 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025055 exon12 c.A1334G p.D445G . . . CYP1A2 1544 broad.mit.edu 36 15 72834241 72834241 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000761 exon7 c.G1310A p.G437D . . . KIAA1024 23251 broad.mit.edu 36 15 77537718 77537718 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015206 exon2 c.G2174A p.S725N . . . IL16 3603 broad.mit.edu 36 15 79358969 79358969 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001172128 exon8 c.C880T p.L294F . . . WHAMM 123720 broad.mit.edu 36 15 81296695 81296695 + Silent SNP T A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080435 exon9 c.T1932A p.P644P . . . SLC28A1 9154 broad.mit.edu 36 15 83279578 83279578 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004213 exon15 c.G1406A p.R469Q . . . C15orf42 90381 broad.mit.edu 36 15 87944888 87944888 + Silent SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152259 exon9 c.A2121G p.G707G . . . SV2B 9899 broad.mit.edu 36 15 89633848 89633848 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014848 exon13 c.G1802A p.G601E . . . SLCO3A1 28232 broad.mit.edu 36 15 90470422 90470422 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013272 exon6 c.C1302T p.C434C . . . PGPEP1L 145814 broad.mit.edu 36 15 97329401 97329401 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001102612 exon5 c.C420T p.G140G . . . MEF2A 4205 broad.mit.edu 36 15 98033140 98033140 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005587 exon7 c.C630T p.S210S . . . ADAMTS17 170691 broad.mit.edu 36 15 98489765 98489765 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139057 exon12 c.G1691A p.R564H . . . ADAMTS17 170691 broad.mit.edu 36 15 98620083 98620083 + Silent SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139057 exon5 c.T870C p.R290R . . . RAB40C 57799 broad.mit.edu 36 16 617580 617581 + Frame_Shift_Ins INS - C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001172664 exon7 c.803_804insC p.S268fs . . . NOMO1 23420 broad.mit.edu 36 16 14883981 14883981 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014287 exon26 c.G3057T p.K1019N . . . ERI2 112479 broad.mit.edu 36 16 20722330 20722330 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080663 exon3 c.T101G p.F34C . . . LYRM1 57149 broad.mit.edu 36 16 20834438 20834438 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020424 exon2 c.G60A p.A20A . . . DNAH3 55567 broad.mit.edu 36 16 21000502 21000502 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017539 exon20 c.C2925T p.C975C . . . OTOA 146183 broad.mit.edu 36 16 21645453 21645453 + Silent SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144672 exon18 c.A1989G p.S663S . . . DCI 1632 broad.mit.edu 36 16 2230104 2230104 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001178029 exon7 c.G735A p.T245T . . . USP31 57478 broad.mit.edu 36 16 23024309 23024309 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020718 exon5 c.G1043T p.R348I . . . GTF3C1 2975 broad.mit.edu 36 16 27404944 27404944 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001520 exon24 c.C3733T p.R1245C . . . GSG1L 146395 broad.mit.edu 36 16 27726329 27726329 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_144675 exon5 c.G413A p.R138H . . . KREMEN2 79412 broad.mit.edu 36 16 2954610 2954610 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172229 exon1 c.A88G p.S30G . . . KCTD13 253980 broad.mit.edu 36 16 29825914 29825914 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_178863 exon6 c.C770T p.A257V . . . ZNF688 146542 broad.mit.edu 36 16 30489915 30489915 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145271 exon2 c.C227A p.S76Y . . . NETO2 81831 broad.mit.edu 36 16 45720739 45720739 + Silent SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018092 exon3 c.C129A p.T43T . . . ABCC12 94160 broad.mit.edu 36 16 46677028 46677028 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033226 exon27 c.C3805T p.R1269X . . . ABCC11 85320 broad.mit.edu 36 16 46778802 46778802 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145186 exon21 c.C2744A p.P915Q . . . GLYR1 84656 broad.mit.edu 36 16 4795261 4795261 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032569 exon16 c.G1639A p.V547M . . . UBN1 29855 broad.mit.edu 36 16 4848664 4848664 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016936 exon3 c.C431T p.A144V . . . RPGRIP1L 23322 broad.mit.edu 36 16 52279303 52279303 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127897 exon5 c.A605G p.E202G . . . IRX5 10265 broad.mit.edu 36 16 53524301 53524301 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005853 exon2 c.G640A p.E214K . . . MMP2 4313 broad.mit.edu 36 16 54070988 54070988 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004530 exon1 c.G96A p.S32S . . . SLC6A2 6530 broad.mit.edu 36 16 54283392 54283392 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172504 exon5 c.T845C p.V282A . . . CDH11 1009 broad.mit.edu 36 16 63539328 63539328 + Silent SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001797 exon13 c.T2070C p.F690F . . . CDH11 1009 broad.mit.edu 36 16 63563081 63563081 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001797 exon11 c.C1544T p.A515V . . . HAS3 3038 broad.mit.edu 36 16 67706223 67706223 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005329 exon4 c.C1215T p.R405R . . . CIRH1A 84916 broad.mit.edu 36 16 67744988 67744988 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_032830 exon9 c.C1003T p.R335X . . . WWP2 11060 broad.mit.edu 36 16 68523252 68523252 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199424 exon6 c.T323C p.I108T . . . DDX19A 55308 broad.mit.edu 36 16 68956519 68956519 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018332 exon7 c.C588T p.A196A . . . DHX38 9785 broad.mit.edu 36 16 70695144 70695144 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014003 exon13 c.G1780A p.A594T . . . RFWD3 55159 broad.mit.edu 36 16 73219918 73219918 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018124 exon11 c.G1902A p.E634E . . . CENPN 55839 broad.mit.edu 36 16 79617682 79617682 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001100625 exon9 c.C748T p.R250X . . . MBTPS1 8720 broad.mit.edu 36 16 82645687 82645687 + Silent SNP T A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003791 exon23 c.A3027T p.G1009G . . . CRISPLD2 83716 broad.mit.edu 36 16 83458031 83458031 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031476 exon7 c.C737T p.T246M . . . ZDHHC7 55625 broad.mit.edu 36 16 83573080 83573080 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017740 exon4 c.G337A p.A113T . . . KIAA0182 23199 broad.mit.edu 36 16 84263555 84263555 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134473 exon15 c.G3251A p.R1084Q . . . FBXO31 79791 broad.mit.edu 36 16 85951410 85951410 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024735 exon2 c.A404G p.Y135C . . . DEF8 54849 broad.mit.edu 36 16 88558484 88558484 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207514 exon12 c.G1436A p.R479K . . . MYH8 4626 broad.mit.edu 36 17 10262736 10262736 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002472 exon5 c.G462A p.P154P . . . DNAH9 1770 broad.mit.edu 36 17 11730965 11730965 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004662 exon3 c.C6T p.N2N . . . PRPF8 10594 broad.mit.edu 36 17 1525342 1525342 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006445 exon20 c.G2914A p.E972K . . . TRPV2 51393 broad.mit.edu 36 17 16272374 16272374 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016113 exon9 c.C1369T p.R457C . . . TNFRSF13B 23495 broad.mit.edu 36 17 16783735 16783735 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012452 exon5 c.G733A p.A245T . . . DRG2 1819 broad.mit.edu 36 17 17938000 17938000 + Silent SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001388 exon2 c.C213A p.P71P . . . USP22 23326 broad.mit.edu 36 17 20859690 20859690 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015276 exon6 c.G805A p.A269T . . . SARM1 23098 broad.mit.edu 36 17 23747090 23747090 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015077 exon8 c.C1961T p.A654V . . . SPAG5 10615 broad.mit.edu 36 17 23943674 23943674 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006461 exon3 c.G715A p.A239T . . . PROCA1 147011 broad.mit.edu 36 17 24055159 24055159 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152465 exon4 c.G555A p.A185A . . . OR1D2 4991 broad.mit.edu 36 17 2942258 2942258 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_002548 exon1 c.G783A p.K261K . . . TMEM132E 124842 broad.mit.edu 36 17 29988333 29988333 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207313 exon10 c.T1924C p.S642P . . . UNC45B 146862 broad.mit.edu 36 17 30525494 30525494 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173167 exon14 c.C1957A p.L653M . . . SYNRG 11276 broad.mit.edu 36 17 32970262 32970262 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007247 exon19 c.C3598T p.Q1200X . . . LASP1 3927 broad.mit.edu 36 17 34287959 34287959 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006148 exon2 c.C164T p.A55V . . . NT5C3L 115024 broad.mit.edu 36 17 37244999 37244999 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052935 exon3 c.C163T p.R55X . . . CNTNAP1 8506 broad.mit.edu 36 17 38097488 38097488 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003632 exon16 c.G2483A p.G828D . . . CNTD1 124817 broad.mit.edu 36 17 38213370 38213370 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173478 exon6 c.G784A p.A262T . . . BECN1 8678 broad.mit.edu 36 17 38224117 38224117 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003766 exon6 c.C459T p.N153N . . . VAT1 10493 broad.mit.edu 36 17 38424143 38424143 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006373 exon2 c.T587C p.M196T . . . MPP3 4356 broad.mit.edu 36 17 39256899 39256899 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001932 exon10 c.G610A p.A204T . . . KIAA1267 284058 broad.mit.edu 36 17 41500758 41500758 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015443 exon5 c.C1631A p.P544H . . . NPEPPS 9520 broad.mit.edu 36 17 43046039 43046039 + Nonsense_Mutation SNP T A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006310 exon19 c.T2244A p.Y748X . . . OSBPL7 114881 broad.mit.edu 36 17 43251351 43251351 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145798 exon5 c.G369A p.K123K . . . SAMD14 201191 broad.mit.edu 36 17 45550609 45550609 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174920 exon3 c.G125A p.R42Q . . . ABCC3 8714 broad.mit.edu 36 17 46108890 46108890 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003786 exon23 c.G3320A p.S1107N . . . PSMB6 5694 broad.mit.edu 36 17 4647795 4647795 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002798 exon3 c.C275T p.A92V . . . CA10 56934 broad.mit.edu 36 17 47363400 47363400 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020178 exon3 c.G228T p.M76I . . . MMD 23531 broad.mit.edu 36 17 50826795 50826795 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012329 exon7 c.G616A p.A206T . . . TRIM25 7706 broad.mit.edu 36 17 52324483 52324483 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005082 exon9 c.G1470A p.P490P . . . RPS6KB1 6198 broad.mit.edu 36 17 55378833 55378833 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003161 exon15 c.G1480A p.A494T . . . ABCA8 10351 broad.mit.edu 36 17 64448694 64448694 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007168 exon3 c.G101T p.W34L . . . ALOX12 239 broad.mit.edu 36 17 6840952 6840952 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000697 exon2 c.C219T p.D73D . . . CDC42EP4 23580 broad.mit.edu 36 17 68794099 68794099 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012121 exon2 c.G136A p.A46T . . . SDK2 54549 broad.mit.edu 36 17 68865918 68865918 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_001144952 exon40 c.G5488A p.V1830M . . . DNAI2 64446 broad.mit.edu 36 17 69808859 69808859 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023036 exon8 c.A944G p.E315G . . . C17orf77 146723 broad.mit.edu 36 17 70100332 70100332 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152460 exon3 c.G552A p.R184R . . . NUP85 79902 broad.mit.edu 36 17 70739652 70739652 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024844 exon14 c.G1379T p.R460L . . . GGA3 23163 broad.mit.edu 36 17 70748705 70748705 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014001 exon10 c.G876A p.T292T . . . TNFSF12-TNFSF13 407977 broad.mit.edu 36 17 7400883 7400883 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172089 exon6 c.C438T p.Y146Y . . . TP53 7157 broad.mit.edu 36 17 7517845 7517845 + Missense_Mutation SNP C T T rs28934576 unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001126114 exon8 c.G818A p.R273H TP53,central_nervous_system,brain,Substitution - Missense,-1 . . SLC26A11 284129 broad.mit.edu 36 17 75825409 75825409 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166349 exon7 c.A824G p.E275G . . . ASPSCR1 79058 broad.mit.edu 36 17 77536697 77536697 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024083 exon4 c.A299G p.D100G . . . FOXK2 3607 broad.mit.edu 36 17 78134054 78134054 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004514 exon5 c.G1058T p.R353M . . . C17orf59 54785 broad.mit.edu 36 17 8033358 8033358 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017622 exon1 c.G826A p.D276N . . . ABR 29 broad.mit.edu 36 17 861838 861838 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021962 exon19 c.C2099T p.A700V . . . PIK3R5 23533 broad.mit.edu 36 17 8732336 8732336 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014308 exon10 c.G1493A p.R498H . . . MEIS3P1 4213 broad.mit.edu 36 17 15631020 15631022 + In_Frame_Del DEL CTT - - novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 CTT CTT Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . AQP4 361 broad.mit.edu 36 18 22699647 22699647 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001650 exon1 c.G5C p.S2T . . . CHST9 83539 broad.mit.edu 36 18 22750349 22750349 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031422 exon6 c.G1204T p.D402Y . . . CDH2 1000 broad.mit.edu 36 18 23819571 23819571 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001792 exon12 c.C1894G p.P632A . . . DSG1 1828 broad.mit.edu 36 18 27160961 27160961 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001942 exon3 c.G211A p.A71T . . . SLC39A6 25800 broad.mit.edu 36 18 31948254 31948254 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099406 exon6 c.C822T p.G274G . . . COLEC12 81035 broad.mit.edu 36 18 321693 321693 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130386 exon8 c.C2038A p.L680M . . . DCC 1630 broad.mit.edu 36 18 49248335 49248335 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005215 exon25 c.G3693A p.R1231R . . . CDH20 28316 broad.mit.edu 36 18 57363328 57363328 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031891 exon9 c.A1619G p.N540S . . . BCL2 596 broad.mit.edu 36 18 59136875 59136875 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000633 exon2 c.C5T p.A2V . . . SERPINB2 5055 broad.mit.edu 36 18 59709677 59709677 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002575 exon2 c.G19A p.A7T . . . DSEL 92126 broad.mit.edu 36 18 63332131 63332131 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032160 exon2 c.T725C p.L242S . . . TMX3 54495 broad.mit.edu 36 18 64495220 64495220 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019022 exon16 c.C1295A p.P432H . . . TMX3 54495 broad.mit.edu 36 18 64505951 64505951 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019022 exon10 c.C669T p.I223I . . . RTTN 25914 broad.mit.edu 36 18 65910336 65910336 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173630 exon30 c.G4133C p.R1378P . . . NETO1 81832 broad.mit.edu 36 18 68567279 68567279 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138966 exon10 c.C1566A p.S522R . . . ARHGAP28 79822 broad.mit.edu 36 18 6866175 6866175 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010000 exon9 c.T781G p.F261V . . . LRRC30 339291 broad.mit.edu 36 18 7221888 7221888 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105581 exon1 c.T752A p.L251H . . . CTDP1 9150 broad.mit.edu 36 18 75574089 75574089 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_048368 exon7 c.G993A p.A331A . . . NDUFB7 4713 broad.mit.edu 36 19 14538654 14538654 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004146 exon2 c.G204A p.K68K . . . BRD4 23476 broad.mit.edu 36 19 15210966 15210966 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_058243 exon18 c.G3686A p.R1229H . . . AKAP8 10270 broad.mit.edu 36 19 15332697 15332697 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005858 exon12 c.C1489T p.R497W . . . UNC13A 23025 broad.mit.edu 36 19 17604622 17604622 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080421 exon27 c.G3397A p.A1133T . . . RPL18A 6142 broad.mit.edu 36 19 17833210 17833210 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000980 exon2 c.C127T p.R43C . . . IL12RB1 3594 broad.mit.edu 36 19 18041425 18041425 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005535 exon10 c.G1120A p.V374M . . . ZNF99 7652 broad.mit.edu 36 19 22732983 22732983 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080409 exon5 c.C1295A p.A432D . . . GIPC3 126326 broad.mit.edu 36 19 3541070 3541070 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133261 exon6 c.C821T p.A274V . . . RHPN2 85415 broad.mit.edu 36 19 38174613 38174613 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033103 exon13 c.G1600A p.A534T . . . PEPD 5184 broad.mit.edu 36 19 38693857 38693857 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000285 exon3 c.C246T p.C82C . . . ZNF599 148103 broad.mit.edu 36 19 39941975 39941975 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007248 exon4 c.G1571A p.R524Q . . . GRAMD1A 57655 broad.mit.edu 36 19 40193093 40193093 + De_novo_Start_InFrame SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001136199 exon5 c.C474T p.N158N . . . FFAR2 2867 broad.mit.edu 36 19 40633358 40633358 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005306 exon1 c.G902A p.R301H . . . NFKBID 84807 broad.mit.edu 36 19 41078822 41078822 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139239 exon9 c.G506A p.R169H . . . ANKRD24 170961 broad.mit.edu 36 19 4161269 4161269 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133475 exon13 c.G959A p.R320Q . . . ZNF585B 92285 broad.mit.edu 36 19 42369367 42369367 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152279 exon5 c.C912T p.G304G . . . HKR1 284459 broad.mit.edu 36 19 42545459 42545459 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181786 exon6 c.C922T p.R308X . . . PLIN4 729359 broad.mit.edu 36 19 4463470 4463470 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080400 exon3 c.C1460T p.A487V . . . NUMBL 9253 broad.mit.edu 36 19 45878791 45878791 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004756 exon6 c.C411T p.V137V . . . CYP2A13 1553 broad.mit.edu 36 19 46286235 46286235 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000766 exon1 c.C19A p.L7I . . . ZNF574 64763 broad.mit.edu 36 19 47276142 47276142 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_022752 exon2 c.G1544A p.R515H . . . GSK3A 2931 broad.mit.edu 36 19 47428654 47428654 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019884 exon9 c.G1119A p.P373P . . . LYPD3 27076 broad.mit.edu 36 19 48657743 48657743 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014400 exon5 c.C641A p.S214Y . . . IRGQ 126298 broad.mit.edu 36 19 48788891 48788891 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007561 exon3 c.C999T p.G333G . . . PLAUR 5329 broad.mit.edu 36 19 48852586 48852586 + Silent SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005377 exon4 c.C357A p.S119S . . . ZNF226 7769 broad.mit.edu 36 19 49368193 49368193 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146220 exon5 c.A128G p.N43S . . . ERCC1 2067 broad.mit.edu 36 19 50610003 50610003 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001983 exon7 c.G658A p.A220T . . . RSPH6A 81492 broad.mit.edu 36 19 50999543 50999543 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030785 exon3 c.G1460A p.R487H . . . PGLYRP1 8993 broad.mit.edu 36 19 51214708 51214708 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005091 exon2 c.C325T p.R109C . . . MEIS3 56917 broad.mit.edu 36 19 52602192 52602192 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020160 exon10 c.G1088A p.R363Q . . . CRX 1406 broad.mit.edu 36 19 53034925 53034925 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000554 exon4 c.C789T p.P263P . . . HRC 3270 broad.mit.edu 36 19 54349095 54349095 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002152 exon1 c.G1212T p.E404D . . . TSKS 60385 broad.mit.edu 36 19 54934863 54934863 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021733 exon11 c.C1761T p.G587G . . . ZNF473 25888 broad.mit.edu 36 19 55234233 55234233 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001006656 exon3 c.T13G p.F5V . . . MYH14 79784 broad.mit.edu 36 19 55471106 55471106 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077186 exon27 c.C3415T p.R1139W . . . POLD1 5424 broad.mit.edu 36 19 55601391 55601391 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002691 exon11 c.G1383T p.Q461H . . . FAM71E1 112703 broad.mit.edu 36 19 55670907 55670907 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138411 exon2 c.G355A p.V119I . . . LRRC4B 94030 broad.mit.edu 36 19 55714300 55714300 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080457 exon3 c.G482A p.R161Q . . . LONP1 9361 broad.mit.edu 36 19 5643093 5643093 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004793 exon18 c.G2830A p.D944N . . . IGLON5 402665 broad.mit.edu 36 19 56520421 56520421 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001101372 exon4 c.G401A p.R134H . . . IGLON5 402665 broad.mit.edu 36 19 56522807 56522807 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001101372 exon7 c.C777T p.S259S . . . SIGLEC10 89790 broad.mit.edu 36 19 56609542 56609542 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171157 exon8 c.C1370T p.A457V . . . SIGLEC8 27181 broad.mit.edu 36 19 56647520 56647520 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014442 exon7 c.C1425T p.I475I . . . MYADM 91663 broad.mit.edu 36 19 59069355 59069355 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001020820 exon3 c.G760A p.A254T . . . CACNG7 59284 broad.mit.edu 36 19 59110521 59110521 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031896 exon3 c.C374T p.P125L . . . LENG1 79165 broad.mit.edu 36 19 59352358 59352358 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024316 exon3 c.G530A p.R177H . . . LILRB1 10859 broad.mit.edu 36 19 59835798 59835798 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001081639 exon6 c.C733A p.Q245K . . . KIR3DL2 3812 broad.mit.edu 36 19 60055307 60055307 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006737 exon3 c.T113C p.V38A . . . NLRP8 126205 broad.mit.edu 36 19 61182701 61182701 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_176811 exon9 c.C3006T p.C1002C . . . ZNF264 9422 broad.mit.edu 36 19 62415732 62415732 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003417 exon4 c.C1455T p.C485C . . . ACER1 125981 broad.mit.edu 36 19 6257858 6257858 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133492 exon6 c.T662C p.M221T . . . TNFSF14 8740 broad.mit.edu 36 19 6620971 6620971 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003807 exon2 c.G110A p.R37Q . . . C3 718 broad.mit.edu 36 19 6663610 6663610 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000064 exon10 c.G1028A p.R343H . . . ZNF557 79230 broad.mit.edu 36 19 7026716 7026716 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001044388 exon4 c.G61T p.G21X . . . ACTL9 284382 broad.mit.edu 36 19 8669697 8669697 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178525 exon1 c.G355A p.V119I . . . OR2Z1 284383 broad.mit.edu 36 19 8703180 8703180 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004699 exon1 c.G790A p.A264T . . . MUC16 94025 broad.mit.edu 36 19 8950600 8950600 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024690 exon1 c.G2215A p.A739T . . . C19orf66 55337 broad.mit.edu 36 19 10063224 10063224 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018381 exon7 c.561delC p.L187fs . . . ZNF486 90649 broad.mit.edu 36 19 20169052 20169052 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_052852 exon4 c.533delA p.E178fs . . . HIF3A 64344 broad.mit.edu 36 19 51507698 51507698 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_152795 exon8 c.973delG p.G325fs . . . GPR88 54112 broad.mit.edu 36 1 100777485 100777485 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022049 exon2 c.G375A p.T125T . . . OLFM3 118427 broad.mit.edu 36 1 102075115 102075115 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_058170 exon2 c.G124A p.D42N . . . VAV3 10451 broad.mit.edu 36 1 108308824 108308824 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006113 exon1 c.C191T p.P64L . . . PRPF38B 55119 broad.mit.edu 36 1 109043510 109043510 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018061 exon6 c.G986A p.R329H . . . CLCC1 23155 broad.mit.edu 36 1 109283875 109283875 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001048210 exon9 c.G947T p.G316V . . . SARS 6301 broad.mit.edu 36 1 109580138 109580138 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006513 exon8 c.A986G p.Y329C . . . RBM15 64783 broad.mit.edu 36 1 110684995 110684995 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022768 exon1 c.G1445A p.R482H . . . MTOR 2475 broad.mit.edu 36 1 11127317 11127317 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004958 exon34 c.G4847A p.R1616H . . . DENND2D 79961 broad.mit.edu 36 1 111538854 111538854 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024901 exon7 c.G663A p.R221R . . . CSDE1 7812 broad.mit.edu 36 1 115064780 115064780 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130523 exon17 c.T2000G p.V667G . . . FAM46C 54855 broad.mit.edu 36 1 117967707 117967707 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017709 exon2 c.G694A p.A232T . . . TBX15 6913 broad.mit.edu 36 1 119229189 119229189 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152380 exon8 c.C1180A p.H394N . . . VPS13D 55187 broad.mit.edu 36 1 12291222 12291222 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018156 exon27 c.C6587T p.T2196I . . . ANKRD35 148741 broad.mit.edu 36 1 144270267 144270267 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144698 exon7 c.G529A p.A177T . . . GPR89A 653519 broad.mit.edu 36 1 144528080 144528080 + Silent SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001097613 exon4 c.A45G p.V15V . . . HIST2H2BF 440689 broad.mit.edu 36 1 148050478 148050478 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001024599 exon1 c.C25G p.P9A . . . SF3B4 10262 broad.mit.edu 36 1 148162074 148162074 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005850 exon6 c.G1259A p.G420D . . . TARS2 80222 broad.mit.edu 36 1 148736744 148736744 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_025150 exon10 c.C1135T p.Q379X . . . FLG 2312 broad.mit.edu 36 1 150542523 150542523 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002016 exon3 c.C11463T p.D3821D . . . LCE1D 353134 broad.mit.edu 36 1 151037169 151037169 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178352 exon2 c.G275A p.C92Y . . . GATAD2B 57459 broad.mit.edu 36 1 152067340 152067340 + Silent SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020699 exon2 c.G108T p.G36G . . . UBAP2L 9898 broad.mit.edu 36 1 152490707 152490707 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_014847 exon14 c.G1618A p.A540T . . . NES 10763 broad.mit.edu 36 1 154906083 154906083 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006617 exon4 c.G4521T p.L1507F . . . FCRL3 115352 broad.mit.edu 36 1 155932708 155932708 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052939 exon7 c.G878A p.R293Q . . . OR6N1 128372 broad.mit.edu 36 1 157002673 157002673 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005185 exon1 c.G424A p.A142T . . . SLAMF9 89886 broad.mit.edu 36 1 158188855 158188855 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033438 exon3 c.G485A p.G162D . . . KCNJ10 3766 broad.mit.edu 36 1 158278729 158278729 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002241 exon2 c.C218T p.A73V . . . HSPA6 3310 broad.mit.edu 36 1 159761573 159761573 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002155 exon1 c.G501A p.A167A . . . ATF6 22926 broad.mit.edu 36 1 160056067 160056067 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_007348 exon8 c.G930A p.Q310Q . . . UQCRHL 440567 broad.mit.edu 36 1 16006699 16006699 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001089591 exon1 c.C33T p.T11T . . . ATF6 22926 broad.mit.edu 36 1 160089670 160089670 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007348 exon12 c.G1466A p.R489K . . . SPEN 23013 broad.mit.edu 36 1 16075696 16075696 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015001 exon3 c.G817A p.G273S . . . PBX1 5087 broad.mit.edu 36 1 163057403 163057403 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002585 exon8 c.T1116C p.D372D . . . POU2F1 5451 broad.mit.edu 36 1 165609980 165609980 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002697 exon6 c.G414A p.T138T . . . BAT2L2 23215 broad.mit.edu 36 1 169768400 169768400 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015172 exon12 c.C1543T p.R515C . . . TNN 63923 broad.mit.edu 36 1 173313182 173313182 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022093 exon2 c.G5A p.S2N . . . FAM5B 57795 broad.mit.edu 36 1 175511986 175511986 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021165 exon6 c.C805T p.R269C . . . HMCN1 83872 broad.mit.edu 36 1 184380003 184380003 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031935 exon90 c.C14000A p.A4667E . . . HMCN1 83872 broad.mit.edu 36 1 184418042 184418042 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031935 exon105 c.G16414T p.D5472Y . . . TPR 7175 broad.mit.edu 36 1 184572897 184572897 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003292 exon32 c.G4377A p.S1459S . . . CDC73 79577 broad.mit.edu 36 1 191360959 191360959 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024529 exon2 c.C226T p.R76X CDC73,parathyroid,NS,Substitution - Nonsense,0 . . CDC73 79577 broad.mit.edu 36 1 191373881 191373881 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024529 exon6 c.G467A p.R156H . . . F13B 2165 broad.mit.edu 36 1 195291486 195291486 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001994 exon8 c.T1336C p.S446P . . . CRB1 23418 broad.mit.edu 36 1 195657051 195657051 + Silent SNP C T T rs35193230 byFrequency TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201253 exon6 c.C1470T p.G490G . . . LHX9 56956 broad.mit.edu 36 1 196148296 196148296 + Silent SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001014434 exon1 c.T12C p.G4G . . . KDM5B 10765 broad.mit.edu 36 1 200969447 200969447 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_006618 exon23 c.C3614T p.A1205V . . . ADORA1 134 broad.mit.edu 36 1 201401042 201401042 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001048230 exon3 c.G372A p.A124A . . . CHI3L1 1116 broad.mit.edu 36 1 201418601 201418601 + Silent SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001276 exon6 c.A468G p.E156E . . . NFASC 23114 broad.mit.edu 36 1 203210490 203210490 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001160331 exon12 c.C1507T p.R503C . . . KIF17 57576 broad.mit.edu 36 1 20863752 20863752 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122819 exon15 c.G2999A p.R1000Q . . . KCNH1 3756 broad.mit.edu 36 1 208924004 208924004 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002238 exon11 c.C2131T p.R711W . . . HLX 3142 broad.mit.edu 36 1 219124424 219124424 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A A A A Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_021958 exon4 c.A1222C p.K408Q . . . DISP1 84976 broad.mit.edu 36 1 221243649 221243649 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032890 exon8 c.C2287T p.R763C . . . DISP1 84976 broad.mit.edu 36 1 221245879 221245879 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032890 exon8 c.C4517A p.P1506H . . . CELA3A 10136 broad.mit.edu 36 1 22204584 22204584 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005747 exon3 c.A187G p.I63V . . . TP53BP2 7159 broad.mit.edu 36 1 222054328 222054328 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031685 exon11 c.C1381T p.R461C . . . PARP1 142 broad.mit.edu 36 1 224619414 224619414 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001618 exon19 c.G2570A p.R857Q . . . SNAP47 116841 broad.mit.edu 36 1 226002470 226002470 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053052 exon2 c.C545T p.A182V . . . OBSCN 84033 broad.mit.edu 36 1 226570313 226570313 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052843 exon50 c.C13155T p.N4385N . . . OBSCN 84033 broad.mit.edu 36 1 226573556 226573556 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052843 exon54 c.G14480A p.G4827D . . . URB2 9816 broad.mit.edu 36 1 227849958 227849958 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014777 exon7 c.C3985G p.L1329V . . . SIPA1L2 57568 broad.mit.edu 36 1 230643748 230643748 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_020808 exon12 c.G3554A p.G1185D . . . RYR2 6262 broad.mit.edu 36 1 235825428 235825428 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001035 exon34 c.C4444T p.R1482C . . . RYR2 6262 broad.mit.edu 36 1 235937073 235937073 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001035 exon68 c.C9782T p.A3261V . . . C1orf100 200159 broad.mit.edu 36 1 242605338 242605338 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012970 exon3 c.A98G p.Y33C . . . KIF26B 55083 broad.mit.edu 36 1 243916249 243916249 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018012 exon12 c.C3341T p.A1114V . . . PANK4 55229 broad.mit.edu 36 1 2442153 2442153 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018216 exon4 c.C475T p.L159F . . . ZNF670 93474 broad.mit.edu 36 1 245267722 245267722 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033213 exon4 c.G822A p.T274T . . . OR2G2 81470 broad.mit.edu 36 1 245818829 245818829 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001915 exon1 c.G545A p.C182Y . . . OR11L1 391189 broad.mit.edu 36 1 246071575 246071575 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001959 exon1 c.G247T p.A83S . . . OR2M3 127062 broad.mit.edu 36 1 246433696 246433696 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004689 exon1 c.G704A p.R235H . . . OR2T11 127077 broad.mit.edu 36 1 246856772 246856772 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001964 exon1 c.G281A p.C94Y . . . PGBD2 267002 broad.mit.edu 36 1 247177833 247177833 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_170725 exon3 c.G427T p.G143C . . . SEPN1 57190 broad.mit.edu 36 1 26008126 26008126 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020451 exon6 c.G770A p.S257N . . . LIN28A 79727 broad.mit.edu 36 1 26610591 26610591 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024674 exon2 c.C159T p.F53F . . . WDTC1 23038 broad.mit.edu 36 1 27460165 27460165 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015023 exon2 c.C33T p.I11I . . . RCC1 1104 broad.mit.edu 36 1 28731332 28731332 + Silent SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001269 exon4 c.G324T p.S108S . . . CSMD2 114784 broad.mit.edu 36 1 34156361 34156361 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052896 exon5 c.G721A p.A241T . . . SFPQ 6421 broad.mit.edu 36 1 35426235 35426235 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005066 exon7 c.C1741T p.R581C . . . ZMYM4 9202 broad.mit.edu 36 1 35608230 35608230 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005095 exon6 c.G854A p.G285D . . . PSMB2 5690 broad.mit.edu 36 1 35869463 35869463 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199779 exon3 c.G209T p.R70L . . . EIF2C1 26523 broad.mit.edu 36 1 36157776 36157776 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012199 exon19 c.G2555A p.R852H . . . EIF2C3 192669 broad.mit.edu 36 1 36247767 36247767 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177422 exon7 c.G432T p.E144D . . . STK40 83931 broad.mit.edu 36 1 36593534 36593534 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032017 exon6 c.C430A p.L144I . . . C1orf174 339448 broad.mit.edu 36 1 3799394 3799394 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207356 exon2 c.G42A p.A14A . . . MACF1 23499 broad.mit.edu 36 1 39555632 39555632 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012090 exon30 c.C3763T p.R1255C . . . MACF1 23499 broad.mit.edu 36 1 39575454 39575454 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033044 exon2 c.G5399T p.R1800L . . . NT5C1A 84618 broad.mit.edu 36 1 39901650 39901650 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032526 exon4 c.G477A p.P159P . . . RLF 6018 broad.mit.edu 36 1 40476003 40476003 + Silent SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012421 exon8 c.C3042A p.P1014P . . . CLDN19 149461 broad.mit.edu 36 1 42976786 42976786 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_148960 exon2 c.C281T p.A94V . . . EIF2B3 8891 broad.mit.edu 36 1 45179777 45179777 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166588 exon4 c.A442G p.K148E . . . NASP 4678 broad.mit.edu 36 1 45853303 45853303 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001195193 exon8 c.G1506A p.Q502Q . . . CCDC17 149483 broad.mit.edu 36 1 45860603 45860603 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114938 exon7 c.G864T p.R288S . . . MAST2 23139 broad.mit.edu 36 1 46267111 46267111 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015112 exon18 c.A2137C p.I713L . . . CYP4A11 1579 broad.mit.edu 36 1 47168383 47168383 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000778 exon12 c.C1551T p.D517D . . . SPATA6 54558 broad.mit.edu 36 1 48637716 48637716 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019073 exon7 c.G674A p.R225H . . . EPS15 2060 broad.mit.edu 36 1 51686307 51686307 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001981 exon9 c.C650T p.T217M . . . C1orf177 163747 broad.mit.edu 36 1 55050324 55050324 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001110533 exon6 c.C636T p.P212P . . . HOOK1 51361 broad.mit.edu 36 1 60111128 60111128 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015888 exon22 c.C2090T p.A697V . . . FPGT 8790 broad.mit.edu 36 1 74443893 74443893 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199328 exon5 c.C812T p.A271V . . . C1orf173 127254 broad.mit.edu 36 1 74811023 74811023 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002912 exon14 c.G2959T p.V987F . . . PER3 8863 broad.mit.edu 36 1 7770770 7770770 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016831 exon4 c.C469T p.R157C . . . LPHN2 23266 broad.mit.edu 36 1 82189365 82189365 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012302 exon7 c.C1568A p.S523X . . . RPF1 80135 broad.mit.edu 36 1 84721226 84721226 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025065 exon3 c.G326A p.R109Q . . . MCOLN3 55283 broad.mit.edu 36 1 85260406 85260406 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018298 exon11 c.G1255A p.A419T . . . BCAR3 8412 broad.mit.edu 36 1 93912929 93912929 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003567 exon2 c.G146A p.G49D . . . CLSTN1 22883 broad.mit.edu 36 1 9723792 9723792 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014944 exon9 c.C1436T p.P479L . . . SNX7 51375 broad.mit.edu 36 1 98923063 98923063 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152238 exon2 c.C215A p.P72H . . . HCK 3055 broad.mit.edu 36 20 30103890 30103891 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002110 exon1 c.2_3insG p.L1fs . . . ESF1 51575 broad.mit.edu 36 20 13711614 13711614 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016649 exon2 c.G173A p.R58H . . . KIF16B 55614 broad.mit.edu 36 20 16308626 16308626 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024704 exon19 c.C2021T p.A674V . . . CRNKL1 51340 broad.mit.edu 36 20 19971121 19971121 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016652 exon9 c.C1495T p.R499C . . . TMC2 117532 broad.mit.edu 36 20 2545798 2545798 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080751 exon16 c.C2021T p.A674V . . . DNMT3B 1789 broad.mit.edu 36 20 30859285 30859285 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_175848 exon22 c.G2417A p.R806H . . . C20orf185 359710 broad.mit.edu 36 20 31121367 31121367 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182658 exon11 c.C1162T p.R388C . . . SNTA1 6640 broad.mit.edu 36 20 31463789 31463789 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003098 exon5 c.C1014T p.A338A . . . ZNF341 84905 broad.mit.edu 36 20 31842787 31842787 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032819 exon15 c.G2347A p.G783S . . . EDEM2 55741 broad.mit.edu 36 20 33198362 33198362 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018217 exon2 c.A145C p.S49R . . . FAM83C 128876 broad.mit.edu 36 20 33338098 33338098 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178468 exon4 c.G1898A p.S633N . . . RBM12 10137 broad.mit.edu 36 20 33706387 33706387 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152838 exon3 c.A272G p.E91G . . . RALGAPB 57148 broad.mit.edu 36 20 36579842 36579842 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020336 exon9 c.T1202C p.V401A . . . SLC32A1 140679 broad.mit.edu 36 20 36787111 36787111 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080552 exon1 c.C330T p.G110G . . . CSNK2A1 1457 broad.mit.edu 36 20 417335 417335 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001895 exon10 c.G811T p.D271Y . . . TNNC2 7125 broad.mit.edu 36 20 43886148 43886148 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003279 exon5 c.G340A p.E114K . . . SNX21 90203 broad.mit.edu 36 20 43902700 43902700 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_152897 exon4 c.G463A p.V155M . . . CSE1L 1434 broad.mit.edu 36 20 47116172 47116172 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001316 exon4 c.C265T p.R89X . . . RASSF2 9770 broad.mit.edu 36 20 4724521 4724521 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170774 exon4 c.G227A p.R76H . . . ZFP64 55734 broad.mit.edu 36 20 50138579 50138579 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199427 exon8 c.G987A p.P329P . . . C20orf30 29058 broad.mit.edu 36 20 5038082 5038082 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001009923 exon3 c.C184T p.R62C . . . APCDD1L 164284 broad.mit.edu 36 20 56469738 56469738 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_153360 exon4 c.G1020A p.T340T . . . APCDD1L 164284 broad.mit.edu 36 20 56479194 56479194 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_153360 exon2 c.C65T p.A22V . . . TRMT6 51605 broad.mit.edu 36 20 5870605 5870605 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015939 exon8 c.C1104T p.N368N . . . MCM8 84515 broad.mit.edu 36 20 5883882 5883882 + Silent SNP T G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032485 exon5 c.T471G p.G157G . . . LTN1 26046 broad.mit.edu 36 21 29281008 29281008 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015565 exon2 c.C299T p.A100V . . . CLDN17 26285 broad.mit.edu 36 21 30460756 30460756 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012131 exon1 c.C51T p.G17G . . . KRTAP19-2 337969 broad.mit.edu 36 21 30781482 30781482 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181608 exon1 c.C57T p.C19C . . . TIAM1 7074 broad.mit.edu 36 21 31546025 31546025 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_003253 exon6 c.G1315A p.A439T . . . PDE9A 5152 broad.mit.edu 36 21 43025257 43025257 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001574 exon4 c.G193T p.E65X . . . TRPM2 7226 broad.mit.edu 36 21 44611131 44611131 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003307 exon4 c.C490T p.L164L . . . COL18A1 80781 broad.mit.edu 36 21 45713030 45713030 + Silent SNP A C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030582 exon2 c.A1093C p.R365R . . . FTCD 10841 broad.mit.edu 36 21 46395938 46395938 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006657 exon5 c.G598A p.A200T . . . DIP2A 23181 broad.mit.edu 36 21 46798567 46798567 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146114 exon24 c.G2896A p.A966T . . . TPTE 7179 broad.mit.edu 36 21 9973251 9973251 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199259 exon9 c.C278T p.A93V . . . NCAM2 4685 broad.mit.edu 36 21 21704599 21704599 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004540 exon10 c.1330delA p.K444fs . . . TXNRD2 10587 broad.mit.edu 36 22 18282744 18282744 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006440 exon7 c.C584A p.P195H . . . PI4KA 5297 broad.mit.edu 36 22 19477503 19477503 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_058004 exon19 c.T2132C p.V711A . . . ZNF280B 140883 broad.mit.edu 36 22 21172926 21172926 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080764 exon4 c.T798G p.S266R . . . GNAZ 2781 broad.mit.edu 36 22 21795358 21795358 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002073 exon3 c.A808G p.N270D . . . ZNF70 7621 broad.mit.edu 36 22 22416368 22416368 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021916 exon2 c.C960T p.S320S . . . SUSD2 56241 broad.mit.edu 36 22 22914248 22914248 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019601 exon14 c.G2397A p.A799A . . . SPECC1L 23384 broad.mit.edu 36 22 23137589 23137589 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145468 exon14 c.A3121G p.N1041D . . . ADORA2A 135 broad.mit.edu 36 22 23166791 23166791 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000675 exon3 c.G573A p.L191L . . . MYO18B 84700 broad.mit.edu 36 22 24503670 24503670 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032608 exon8 c.G1990A p.A664T . . . SF3A1 10291 broad.mit.edu 36 22 29072466 29072466 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005409 exon3 c.C228T p.I76I . . . SFI1 9814 broad.mit.edu 36 22 30330320 30330320 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014775 exon18 c.G1814A p.R605Q . . . DDX17 10521 broad.mit.edu 36 22 37212229 37212229 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098504 exon13 c.G1853A p.G618D . . . APOBEC3G 60489 broad.mit.edu 36 22 37812471 37812471 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021822 exon6 c.G977A p.R326H . . . SMCR7L 54471 broad.mit.edu 36 22 38239873 38239873 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_019008 exon6 c.G991A p.A331T . . . MEI1 150365 broad.mit.edu 36 22 40507287 40507287 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152513 exon23 c.T2869C p.S957P . . . POLDIP3 84271 broad.mit.edu 36 22 41318017 41318017 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178136 exon6 c.T822G p.C274W . . . PRR5-ARHGAP8 553158 broad.mit.edu 36 22 43589244 43589244 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181334 exon8 c.G694A p.V232M . . . CELSR1 9620 broad.mit.edu 36 22 45168795 45168795 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014246 exon14 c.T5872G p.W1958G . . . ZBED4 9889 broad.mit.edu 36 22 48663774 48663774 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014838 exon2 c.A460G p.T154A . . . PLXNB2 23654 broad.mit.edu 36 22 49063640 49063640 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012401 exon16 c.2782delG p.V928fs . . . MAP4K4 9448 broad.mit.edu 36 2 101814633 101814633 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145687 exon7 c.C527A p.A176D . . . SLC9A2 6549 broad.mit.edu 36 2 102640646 102640646 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003048 exon2 c.C481A p.P161T . . . EDAR 10913 broad.mit.edu 36 2 108880019 108880019 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022336 exon12 c.C1123T p.R375C . . . MERTK 10461 broad.mit.edu 36 2 112495533 112495533 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006343 exon17 c.C2253T p.G751G . . . CHCHD5 84269 broad.mit.edu 36 2 113060078 113060078 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032309 exon2 c.G59A p.G20D . . . INSIG2 51141 broad.mit.edu 36 2 118570646 118570646 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016133 exon2 c.G44A p.G15D . . . SMPD4 55627 broad.mit.edu 36 2 130629235 130629235 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017951 exon15 c.C1474T p.L492F . . . TUBA3E 112714 broad.mit.edu 36 2 130668108 130668108 + Silent SNP G T T rs1052303 unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G G G T Unknown Valid LOH Phase_I Capture Illumina Illumina HiSeq NM_207312 exon4 c.C777A p.L259L . . . CXCR4 7852 broad.mit.edu 36 2 136589265 136589265 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003467 exon2 c.C703T p.R235C . . . THSD7B 80731 broad.mit.edu 36 2 137530654 137530654 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080427 exon2 c.C241T p.H81Y . . . HNMT 3176 broad.mit.edu 36 2 138455322 138455322 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001024075 exon3 c.G257A p.R86H . . . LRP1B 53353 broad.mit.edu 36 2 141015093 141015093 + Silent SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018557 exon45 c.T7432C p.L2478L . . . NEB 4703 broad.mit.edu 36 2 152055160 152055160 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164507 exon180 c.C25269A p.S8423R . . . NEB 4703 broad.mit.edu 36 2 152116559 152116559 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164507 exon129 c.C19883T p.A6628V . . . NEB 4703 broad.mit.edu 36 2 152208821 152208821 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164507 exon57 c.C7713T p.D2571D . . . NEB 4703 broad.mit.edu 36 2 152237176 152237176 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164507 exon37 c.G4252A p.A1418T . . . ACVR1 90 broad.mit.edu 36 2 158302408 158302408 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001111067 exon11 c.G1411T p.A471S . . . GRB14 2888 broad.mit.edu 36 2 165073604 165073604 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004490 exon7 c.C821T p.P274L . . . SCN9A 6335 broad.mit.edu 36 2 166792459 166792459 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002977 exon23 c.G4194A p.T1398T . . . XIRP2 129446 broad.mit.edu 36 2 167815542 167815542 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199144 exon7 c.C8728T p.R2910X . . . STK39 27347 broad.mit.edu 36 2 168639922 168639922 + Silent SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013233 exon11 c.T1155C p.S385S . . . STK39 27347 broad.mit.edu 36 2 168746824 168746824 + Silent SNP A C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013233 exon2 c.T231G p.V77V . . . LRP2 4036 broad.mit.edu 36 2 169791272 169791272 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004525 exon32 c.G5300A p.S1767N . . . LRP2 4036 broad.mit.edu 36 2 169845271 169845271 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004525 exon11 c.C1176T p.G392G . . . PPIG 9360 broad.mit.edu 36 2 170173513 170173513 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004792 exon7 c.A376G p.I126V . . . DYNC1I2 1781 broad.mit.edu 36 2 172290801 172290801 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001378 exon9 c.T734G p.F245C . . . TTN 7273 broad.mit.edu 36 2 179132988 179132988 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon154 c.G58921A p.E19641K . . . TTN 7273 broad.mit.edu 36 2 179133986 179133986 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon154 c.G57923A p.R19308K . . . TTN 7273 broad.mit.edu 36 2 179154901 179154901 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon143 c.C39245T p.P13082L . . . SESTD1 91404 broad.mit.edu 36 2 179745134 179745134 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_178123 exon5 c.G327A p.T109T . . . MFSD6 54842 broad.mit.edu 36 2 191009379 191009379 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017694 exon3 c.C379T p.R127C . . . MFSD6 54842 broad.mit.edu 36 2 191009642 191009642 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017694 exon3 c.G642T p.L214F . . . DNAH7 56171 broad.mit.edu 36 2 196597409 196597409 + Silent SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018897 exon8 c.C732A p.A244A . . . CCNYL1 151195 broad.mit.edu 36 2 208320179 208320179 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152523 exon9 c.A593G p.D198G . . . IDH1 3417 broad.mit.edu 36 2 208824424 208824424 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005896 exon3 c.C97T p.P33S . . . PTH2R 5746 broad.mit.edu 36 2 209062086 209062086 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005048 exon11 c.G1181A p.R394H . . . MAP2 4133 broad.mit.edu 36 2 210269210 210269210 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002374 exon7 c.A4071T p.E1357D . . . APOB 338 broad.mit.edu 36 2 21106079 21106079 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000384 exon12 c.G1554A p.K518K . . . STK36 27148 broad.mit.edu 36 2 219246608 219246608 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015690 exon3 c.T101C p.F34S . . . SLC4A3 6508 broad.mit.edu 36 2 220205918 220205918 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005070 exon9 c.A1220C p.D407A . . . SLC4A3 6508 broad.mit.edu 36 2 220207541 220207541 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005070 exon12 c.C1717T p.R573C . . . SLC4A3 6508 broad.mit.edu 36 2 220212600 220212600 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005070 exon20 c.C3176T p.A1059V . . . SPHKAP 80309 broad.mit.edu 36 2 228554771 228554771 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142644 exon12 c.A5009G p.D1670G . . . DNER 92737 broad.mit.edu 36 2 230020320 230020320 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139072 exon8 c.C1442T p.T481M . . . DNER 92737 broad.mit.edu 36 2 230158842 230158842 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139072 exon4 c.G823A p.A275T . . . TRIP12 9320 broad.mit.edu 36 2 230402211 230402211 + Silent SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004238 exon7 c.T1248C p.F416F . . . CHRND 1144 broad.mit.edu 36 2 233108255 233108255 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000751 exon12 c.C1543T p.R515C . . . GIGYF2 26058 broad.mit.edu 36 2 233329249 233329249 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001103148 exon5 c.G340A p.V114M . . . GBX2 2637 broad.mit.edu 36 2 236739502 236739502 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_001485 exon2 c.G841A p.A281T . . . COL6A3 1293 broad.mit.edu 36 2 237933527 237933527 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_057166 exon14 c.G4404A p.P1468P . . . COL6A3 1293 broad.mit.edu 36 2 237954363 237954363 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_057166 exon3 c.G610A p.A204T . . . RAB17 64284 broad.mit.edu 36 2 238148409 238148409 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022449 exon6 c.G631A p.A211T . . . PASK 23178 broad.mit.edu 36 2 241714956 241714956 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015148 exon10 c.G2047A p.V683I . . . FARP2 9855 broad.mit.edu 36 2 242051528 242051528 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014808 exon16 c.C1783T p.R595C . . . OTOF 9381 broad.mit.edu 36 2 26538502 26538502 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_194323 exon25 c.C2943G p.D981E . . . CAD 790 broad.mit.edu 36 2 27309893 27309893 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004341 exon20 c.G3201T p.E1067D . . . PLB1 151056 broad.mit.edu 36 2 28666048 28666048 + Silent SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001170585 exon27 c.A1890G p.E630E . . . FAM179A 165186 broad.mit.edu 36 2 29103228 29103228 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199280 exon14 c.G1859A p.R620Q . . . C2orf71 388939 broad.mit.edu 36 2 29147646 29147646 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001029883 exon1 c.C2986A p.P996T . . . CRIM1 51232 broad.mit.edu 36 2 36521932 36521932 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016441 exon3 c.G533A p.R178H . . . SOS1 6654 broad.mit.edu 36 2 39103288 39103288 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005633 exon10 c.G1785T p.K595N . . . SLC8A1 6546 broad.mit.edu 36 2 40220306 40220306 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001112800 exon8 c.G2269A p.D757N . . . SLC3A1 6519 broad.mit.edu 36 2 44384816 44384816 + Silent SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000341 exon7 c.T1167C p.S389S . . . TTC7A 57217 broad.mit.edu 36 2 47154558 47154558 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020458 exon20 c.G2569A p.E857K . . . MSH2 4436 broad.mit.edu 36 2 47497037 47497037 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000251 exon6 c.G1041A p.K347K . . . MSH6 2956 broad.mit.edu 36 2 47879708 47879708 + Missense_Mutation SNP G A A rs63750440 unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000179 exon4 c.G1082A p.R361H . . . ACTG2 72 broad.mit.edu 36 2 73994200 73994200 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001615 exon6 c.C532T p.R178C . . . SLC4A5 57835 broad.mit.edu 36 2 74308184 74308184 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_021196 exon22 c.T2932C p.S978P . . . MRPL53 116540 broad.mit.edu 36 2 74553235 74553235 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053050 exon1 c.T61A p.C21S . . . HTRA2 27429 broad.mit.edu 36 2 74610832 74610832 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013247 exon1 c.G191A p.G64E . . . POLR1A 25885 broad.mit.edu 36 2 86162243 86162243 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015425 exon8 c.G915A p.P305P . . . POLR1A 25885 broad.mit.edu 36 2 86169299 86169299 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015425 exon6 c.G631A p.G211R . . . ITPRIPL1 150771 broad.mit.edu 36 2 96356826 96356826 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001163523 exon2 c.C706A p.P236T . . . COL8A1 1295 broad.mit.edu 36 3 100996449 100996449 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_020351 exon4 c.G1014A p.L338L . . . SLC6A11 6538 broad.mit.edu 36 3 10833058 10833058 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014229 exon1 c.G108A p.A36A . . . MORC1 27136 broad.mit.edu 36 3 110258978 110258978 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014429 exon13 c.C1077T p.N359N . . . PHLDB2 90102 broad.mit.edu 36 3 113150471 113150471 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_001134439 exon10 c.C2490T p.G830G . . . ATG7 10533 broad.mit.edu 36 3 11329804 11329804 + Silent SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006395 exon6 c.T438C p.Y146Y . . . CD200R1L 344807 broad.mit.edu 36 3 114028548 114028548 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008784 exon4 c.T661A p.S221T . . . SIDT1 54847 broad.mit.edu 36 3 114803168 114803168 + Silent SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017699 exon11 c.A1089G p.T363T . . . ILDR1 286676 broad.mit.edu 36 3 123195443 123195443 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_175924 exon6 c.C711T p.I237I . . . PDIA5 10954 broad.mit.edu 36 3 124325666 124325666 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006810 exon9 c.C673T p.R225C . . . MYLK 4638 broad.mit.edu 36 3 124938921 124938921 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053025 exon8 c.A748G p.I250V . . . PLXNA1 5361 broad.mit.edu 36 3 128223663 128223663 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032242 exon21 c.C4084T p.L1362L . . . RHO 6010 broad.mit.edu 36 3 130733853 130733853 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000539 exon3 c.C600T p.N200N . . . COL6A6 131873 broad.mit.edu 36 3 131828046 131828046 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001102608 exon24 c.G4906T p.G1636X . . . ASTE1 28990 broad.mit.edu 36 3 132226541 132226541 + Silent SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014065 exon3 c.C300A p.I100I . . . CCRL1 51554 broad.mit.edu 36 3 133802805 133802805 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178445 exon1 c.G874A p.A292T . . . C3orf36 80111 broad.mit.edu 36 3 135129992 135129992 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025041 exon1 c.G346A p.A116T . . . CEP63 80254 broad.mit.edu 36 3 135750673 135750673 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_001042383 exon9 c.G1009A p.A337T . . . STAG1 10274 broad.mit.edu 36 3 137805888 137805888 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005862 exon4 c.C250T p.P84S . . . ESYT3 83850 broad.mit.edu 36 3 139662186 139662186 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_031913 exon7 c.C782T p.A261V . . . TRIM42 287015 broad.mit.edu 36 3 141902492 141902492 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152616 exon5 c.C2158T p.Q720X . . . SLC9A9 285195 broad.mit.edu 36 3 144853856 144853856 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173653 exon6 c.A686G p.D229G . . . MED12L 116931 broad.mit.edu 36 3 152385811 152385811 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053002 exon11 c.C1499T p.A500V . . . METTL6 131965 broad.mit.edu 36 3 15432359 15432359 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152396 exon4 c.A455G p.D152G . . . NLGN1 22871 broad.mit.edu 36 3 175475974 175475974 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014932 exon5 c.T822G p.H274Q . . . ZMAT3 64393 broad.mit.edu 36 3 180267976 180267976 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152240 exon3 c.G259T p.A87S . . . KLHL6 89857 broad.mit.edu 36 3 184755854 184755854 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130446 exon1 c.C282A p.S94R . . . FAM131A 131408 broad.mit.edu 36 3 185545182 185545182 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171093 exon6 c.C576T p.G192G . . . MAP3K13 9175 broad.mit.edu 36 3 186667363 186667363 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004721 exon10 c.C1561T p.R521C . . . BCL6 604 broad.mit.edu 36 3 188927334 188927334 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130845 exon7 c.G1587A p.E529E . . . CLDN16 10686 broad.mit.edu 36 3 191608802 191608802 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006580 exon4 c.C598A p.P200T . . . KCNH8 131096 broad.mit.edu 36 3 19473295 19473295 + Silent SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144633 exon11 c.A1857G p.S619S . . . C3orf43 255798 broad.mit.edu 36 3 197720916 197720916 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077657 exon2 c.G72A p.A24A . . . MFI2 4241 broad.mit.edu 36 3 198228385 198228385 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005929 exon7 c.C886T p.L296F . . . EFHB 151651 broad.mit.edu 36 3 19900956 19900956 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144715 exon11 c.T2089C p.Y697H . . . LMLN 89782 broad.mit.edu 36 3 199191644 199191644 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033029 exon6 c.G600A p.V200V . . . PLCD1 5333 broad.mit.edu 36 3 38036763 38036763 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006225 exon2 c.G119A p.R40H . . . SCN5A 6331 broad.mit.edu 36 3 38638942 38638942 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099405 exon4 c.C435T p.C145C . . . SLC25A38 54977 broad.mit.edu 36 3 39406022 39406022 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017875 exon2 c.C102T p.G34G . . . VIPR1 7433 broad.mit.edu 36 3 42548789 42548789 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004624 exon10 c.C970T p.R324W . . . NBEAL2 23218 broad.mit.edu 36 3 47021048 47021048 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015175 exon38 c.G6258A p.A2086A . . . MAP4 4134 broad.mit.edu 36 3 47933470 47933470 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134364 exon7 c.T851C p.L284S . . . NCKIPSD 51517 broad.mit.edu 36 3 48687040 48687040 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016453 exon13 c.C2110T p.R704C . . . USP4 7375 broad.mit.edu 36 3 49318178 49318178 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199443 exon8 c.G961A p.A321T . . . SEMA3G 56920 broad.mit.edu 36 3 52450446 52450446 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020163 exon7 c.C687T p.A229A . . . ITIH1 3697 broad.mit.edu 36 3 52794233 52794233 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166434 exon10 c.G1115A p.R372H . . . IL17RB 55540 broad.mit.edu 36 3 53867863 53867863 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018725 exon9 c.C825T p.G275G . . . ARL6IP5 10550 broad.mit.edu 36 3 69236434 69236434 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_006407 exon3 c.G524A p.G175D . . . FOXP1 27086 broad.mit.edu 36 3 71330117 71330117 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032682 exon6 c.C106T p.R36W . . . LMCD1 29995 broad.mit.edu 36 3 8582140 8582140 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014583 exon5 c.C746T p.A249V . . . EPHA3 2042 broad.mit.edu 36 3 89472814 89472814 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_005233 exon4 c.G873A p.P291P . . . EPHA3 2042 broad.mit.edu 36 3 89551107 89551107 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005233 exon11 c.G1951A p.A651T . . . GABRR3 200959 broad.mit.edu 36 3 99188405 99188405 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105580 exon9 c.T1216G p.F406V . . . OR5H1 26341 broad.mit.edu 36 3 99334821 99334821 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005338 exon1 c.T590G p.L197R . . . AGXT2L1 64850 broad.mit.edu 36 4 109900881 109900881 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146590 exon2 c.T87A p.D29E . . . PDE5A 8654 broad.mit.edu 36 4 120707706 120707706 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033437 exon4 c.C717T p.N239N . . . KIAA1109 84162 broad.mit.edu 36 4 123448595 123448595 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015312 exon56 c.T9883A p.W3295R . . . FAT4 79633 broad.mit.edu 36 4 126457023 126457023 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024582 exon1 c.T7G p.L3V . . . PCDH10 57575 broad.mit.edu 36 4 134291857 134291857 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032961 exon1 c.C1112T p.A371V . . . PCDH18 54510 broad.mit.edu 36 4 138669144 138669144 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019035 exon3 c.T2678C p.I893T . . . PCDH18 54510 broad.mit.edu 36 4 138670407 138670407 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019035 exon1 c.G2286A p.V762V . . . FBXW7 55294 broad.mit.edu 36 4 153471357 153471357 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018315 exon6 c.C859T p.R287X FBXW7,central_nervous_system,brain,Substitution - Nonsense,0 . . DCHS2 54798 broad.mit.edu 36 4 155473755 155473755 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142552 exon5 c.G3055A p.A1019T . . . GUCY1A3 2982 broad.mit.edu 36 4 156851607 156851607 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130682 exon6 c.G840A p.S280S . . . FAM198B 51313 broad.mit.edu 36 4 159311850 159311850 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128424 exon2 c.C128T p.A43V . . . ETFDH 2110 broad.mit.edu 36 4 159821156 159821156 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004453 exon2 c.G122T p.R41L . . . CPE 1363 broad.mit.edu 36 4 166608381 166608381 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001873 exon3 c.A596G p.Y199C . . . ODZ3 55714 broad.mit.edu 36 4 183958016 183958016 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080477 exon27 c.A7618G p.T2540A . . . ACSL1 2180 broad.mit.edu 36 4 185918615 185918615 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_001995 exon18 c.C1672T p.H558Y . . . LRP2BP 55805 broad.mit.edu 36 4 186532375 186532375 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018409 exon5 c.G487A p.A163T . . . CCDC149 91050 broad.mit.edu 36 4 24448942 24448942 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173463 exon6 c.C423T p.G141G . . . SEL1L3 23231 broad.mit.edu 36 4 25432721 25432721 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015187 exon7 c.G1285A p.A429T . . . RFC1 5981 broad.mit.edu 36 4 38998480 38998480 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002913 exon9 c.C1013T p.S338L . . . ATP10D 57205 broad.mit.edu 36 4 47232721 47232721 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020453 exon7 c.A929C p.K310T . . . LNX1 84708 broad.mit.edu 36 4 54039576 54039576 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001126328 exon8 c.G1576A p.A526T . . . KDR 3791 broad.mit.edu 36 4 55663390 55663390 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002253 exon14 c.C2030T p.T677M . . . JAKMIP1 152789 broad.mit.edu 36 4 6134325 6134325 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144720 exon6 c.G1013A p.R338Q . . . LPHN3 23284 broad.mit.edu 36 4 62592849 62592849 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015236 exon22 c.G3597A p.A1199A . . . TECRL 253017 broad.mit.edu 36 4 64871024 64871024 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010874 exon4 c.G413T p.G138V . . . UBA6 55236 broad.mit.edu 36 4 68197524 68197524 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018227 exon14 c.C1105T p.P369S . . . AMBN 258 broad.mit.edu 36 4 71506781 71506781 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_016519 exon13 c.C1089T p.G363G . . . ABCG2 9429 broad.mit.edu 36 4 89272030 89272030 + Silent SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004827 exon4 c.T327C p.N109N . . . FAM13A 10144 broad.mit.edu 36 4 89877676 89877676 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_014883 exon21 c.C2616T p.G872G . . . SNCA 6622 broad.mit.edu 36 4 90962477 90962477 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146054 exon4 c.G249T p.E83D . . . CCT5 22948 broad.mit.edu 36 5 10314684 10314684 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012073 exon8 c.G1006A p.A336T . . . TSLP 85480 broad.mit.edu 36 5 110435555 110435555 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T T T T Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_033035 exon1 c.T68C p.V23A . . . TSLP 85480 broad.mit.edu 36 5 110439636 110439636 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033035 exon4 c.C445T p.R149C . . . YTHDC2 64848 broad.mit.edu 36 5 112902744 112902744 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022828 exon8 c.G1177T p.E393X . . . DTWD2 285605 broad.mit.edu 36 5 118204671 118204671 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173666 exon6 c.G737A p.R246H . . . SLC27A6 28965 broad.mit.edu 36 5 128348862 128348862 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017372 exon2 c.C619T p.R207C . . . CDC25C 995 broad.mit.edu 36 5 137693171 137693171 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001790 exon3 c.C259A p.L87I . . . DNAH5 1767 broad.mit.edu 36 5 13770565 13770565 + Silent SNP C G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001369 exon73 c.G12564C p.V4188V . . . DNAH5 1767 broad.mit.edu 36 5 13774259 13774259 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001369 exon71 c.G12129A p.T4043T . . . DNAH5 1767 broad.mit.edu 36 5 13924054 13924054 + Missense_Mutation SNP C T T rs73055857 by1000genomes TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001369 exon24 c.G3656A p.R1219H . . . PCDHB1 29930 broad.mit.edu 36 5 140411432 140411432 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013340 exon1 c.C193T p.R65W . . . PCDHB7 56129 broad.mit.edu 36 5 140534218 140534218 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018940 exon1 c.G1618A p.A540T . . . PCDHB10 56126 broad.mit.edu 36 5 140554010 140554010 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018930 exon1 c.C1701T p.N567N . . . PCDHB11 56125 broad.mit.edu 36 5 140560001 140560001 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018931 exon1 c.C470T p.A157V . . . PCDHGA1 56114 broad.mit.edu 36 5 140692526 140692526 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031993 exon1 c.G2091A p.A697A . . . PCDHGA7 56108 broad.mit.edu 36 5 140744634 140744634 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032087 exon1 c.G1984A p.V662M . . . PCDHGA12 26025 broad.mit.edu 36 5 140792111 140792111 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032094 exon1 c.C1601T p.A534V . . . FCHSD1 89848 broad.mit.edu 36 5 141009198 141009198 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033449 exon5 c.G323A p.R108H . . . TRIO 7204 broad.mit.edu 36 5 14340023 14340023 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007118 exon4 c.C391T p.R131C . . . TCERG1 10915 broad.mit.edu 36 5 145831284 145831284 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040006 exon8 c.C1490A p.A497D . . . ARHGEF37 389337 broad.mit.edu 36 5 148976480 148976480 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001669 exon5 c.G616A p.V206M . . . NMUR2 56923 broad.mit.edu 36 5 151764634 151764634 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020167 exon1 c.G234A p.T78T . . . SGCD 6444 broad.mit.edu 36 5 156117203 156117203 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172244 exon8 c.G609T p.E203D . . . CYFIP2 26999 broad.mit.edu 36 5 156742905 156742905 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001037333 exon28 c.T3167C p.L1056P . . . ODZ2 57451 broad.mit.edu 36 5 167574809 167574809 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122679 exon21 c.C4005T p.C1335C . . . MYO10 4651 broad.mit.edu 36 5 16871214 16871214 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_012334 exon3 c.C183T p.N61N . . . DOCK2 1794 broad.mit.edu 36 5 169405431 169405431 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004946 exon39 c.C3910T p.L1304L . . . BOD1 91272 broad.mit.edu 36 5 172968879 172968879 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138369 exon3 c.A527G p.D176G . . . SFXN1 94081 broad.mit.edu 36 5 174869724 174869724 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022754 exon4 c.G342A p.T114T . . . PROP1 5626 broad.mit.edu 36 5 177355521 177355521 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006261 exon1 c.G20A p.R7H . . . GRM6 2916 broad.mit.edu 36 5 178348953 178348953 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000843 exon5 c.G1072A p.A358T . . . ADAMTS2 9509 broad.mit.edu 36 5 178481295 178481295 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014244 exon21 c.G3151A p.D1051N . . . CDH6 1004 broad.mit.edu 36 5 31358868 31358868 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004932 exon12 c.G2069T p.R690M . . . ADAMTS12 81792 broad.mit.edu 36 5 33624639 33624639 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_030955 exon18 c.C2687T p.A896V . . . TTC23L 153657 broad.mit.edu 36 5 34902912 34902912 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144725 exon7 c.C821A p.A274D . . . LMBRD2 92255 broad.mit.edu 36 5 36158189 36158189 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007527 exon9 c.C1070A p.S357X . . . PRKAA1 5562 broad.mit.edu 36 5 40813435 40813435 + Silent SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006251 exon2 c.T138C p.H46H . . . AHRR 57491 broad.mit.edu 36 5 487432 487432 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020731 exon12 c.C1643T p.T548M . . . PARP8 79668 broad.mit.edu 36 5 50120152 50120152 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001178055 exon11 c.C709T p.R237X . . . PELO 53918 broad.mit.edu 36 5 52133192 52133192 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_015946 exon3 c.G919A p.A307T . . . SLC9A3 6550 broad.mit.edu 36 5 529449 529449 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004174 exon13 c.C1935T p.D645D . . . SNX18 112574 broad.mit.edu 36 5 53874895 53874895 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001102575 exon2 c.T1751C p.F584S . . . HTR1A 3350 broad.mit.edu 36 5 63292442 63292442 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000524 exon1 c.C861T p.G287G . . . TRIM23 373 broad.mit.edu 36 5 64945772 64945772 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033228 exon3 c.A275T p.N92I . . . ENC1 8507 broad.mit.edu 36 5 73966485 73966485 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003633 exon2 c.C1582T p.R528C . . . S100Z 170591 broad.mit.edu 36 5 76207025 76207025 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130772 exon3 c.C85A p.L29I . . . AGGF1 55109 broad.mit.edu 36 5 76394681 76394681 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018046 exon14 c.C1993T p.P665S . . . ADCY2 108 broad.mit.edu 36 5 7870087 7870087 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020546 exon23 c.C2992T p.R998X . . . CMYA5 202333 broad.mit.edu 36 5 79076844 79076844 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153610 exon4 c.A10778G p.E3593G . . . EDIL3 10085 broad.mit.edu 36 5 83391937 83391937 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005711 exon9 c.G1075A p.D359N . . . PDLIM4 8572 broad.mit.edu 36 5 131634678 131634678 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001131027 exon4 c.499delC p.P167fs . . . CD74 972 broad.mit.edu 36 5 149766717 149766717 + Splice_Site SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . SIM1 6492 broad.mit.edu 36 6 100948433 100948433 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005068 exon10 c.C1221T p.G407G . . . AIM1 202 broad.mit.edu 36 6 107113135 107113135 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001624 exon16 c.A4573G p.N1525D . . . PDSS2 57107 broad.mit.edu 36 6 107638342 107638342 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020381 exon6 c.C1002T p.I334I . . . NEDD9 4739 broad.mit.edu 36 6 11299142 11299142 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006403 exon5 c.G946A p.A316T . . . RSPH4A 345895 broad.mit.edu 36 6 117055871 117055871 + Silent SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001161664 exon3 c.A1308G p.E436E . . . RFX6 222546 broad.mit.edu 36 6 117351053 117351053 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173560 exon14 c.C1528A p.L510I . . . ROS1 6098 broad.mit.edu 36 6 117716648 117716648 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002944 exon43 c.C6744T p.G2248G . . . C6orf174 387104 broad.mit.edu 36 6 127838327 127838327 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012279 exon6 c.A2537G p.Y846C . . . LAMA2 3908 broad.mit.edu 36 6 129675867 129675867 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001079823 exon23 c.G3343A p.A1115T . . . MAP7 9053 broad.mit.edu 36 6 136725459 136725459 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198614 exon12 c.A1414G p.T472A . . . PLAGL1 5325 broad.mit.edu 36 6 144305428 144305428 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080955 exon6 c.G62A p.R21Q . . . SHPRH 257218 broad.mit.edu 36 6 146282236 146282236 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173082 exon22 c.C4105T p.R1369C . . . GRM1 2911 broad.mit.edu 36 6 146522300 146522300 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114329 exon3 c.G824A p.R275H . . . ESR1 2099 broad.mit.edu 36 6 152374604 152374604 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122740 exon6 c.C1217A p.P406H . . . SYNE1 23345 broad.mit.edu 36 6 152514830 152514830 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015293 exon49 c.A7841G p.D2614G . . . SYNE1 23345 broad.mit.edu 36 6 152625008 152625008 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015293 exon16 c.C2396T p.P799L . . . OPRM1 4988 broad.mit.edu 36 6 154402615 154402615 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000914 exon1 c.C243T p.C81C . . . DTNBP1 84062 broad.mit.edu 36 6 15641493 15641493 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032122 exon8 c.G624A p.E208E . . . WTAP 9589 broad.mit.edu 36 6 160096135 160096135 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004906 exon8 c.G693A p.E231E . . . MLLT4 4301 broad.mit.edu 36 6 168094724 168094724 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001040000 exon29 c.C3820T p.R1274C . . . SMOC2 64094 broad.mit.edu 36 6 168653493 168653493 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166412 exon2 c.C134T p.A45V . . . LRRC16A 55604 broad.mit.edu 36 6 25628533 25628533 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017640 exon23 c.G1957A p.A653T . . . PRSS16 10279 broad.mit.edu 36 6 27328700 27328700 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005865 exon9 c.C1143T p.F381F . . . HLA-C 3107 broad.mit.edu 36 6 31346133 31346133 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002117 exon4 c.G728T p.R243L . . . NFKBIL1 4795 broad.mit.edu 36 6 31634301 31634301 + Silent SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144963 exon4 c.C966A p.G322G . . . TAP1 6890 broad.mit.edu 36 6 32926249 32926249 + Silent SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000593 exon5 c.A1254G p.E418E . . . HLA-DMB 3109 broad.mit.edu 36 6 33011309 33011309 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_002118 exon4 c.C721T p.R241W . . . PPARD 5467 broad.mit.edu 36 6 35501644 35501644 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171818 exon9 c.G1136A p.R379H . . . KIAA0240 23506 broad.mit.edu 36 6 42940456 42940456 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015349 exon12 c.A2534G p.H845R . . . SRF 6722 broad.mit.edu 36 6 43249704 43249704 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003131 exon2 c.C655A p.L219I . . . VEGFA 7422 broad.mit.edu 36 6 43857760 43857760 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001025369 exon6 c.G1052A p.R351H . . . TMEM63B 55362 broad.mit.edu 36 6 44223101 44223101 + Silent SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018426 exon12 c.C873A p.A291A . . . PKHD1 5314 broad.mit.edu 36 6 51907029 51907029 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170724 exon37 c.G5959A p.A1987T . . . LRRC1 55227 broad.mit.edu 36 6 53886675 53886675 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018214 exon11 c.C1055T p.A352V . . . HMGCLL1 54511 broad.mit.edu 36 6 55551795 55551795 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019036 exon1 c.C18T p.S6S . . . EXOC2 55770 broad.mit.edu 36 6 582755 582755 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018303 exon2 c.A64G p.T22A . . . RIOK1 83732 broad.mit.edu 36 6 7338450 7338450 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031480 exon2 c.A191G p.D64G . . . DOPEY1 23033 broad.mit.edu 36 6 83885333 83885333 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015018 exon8 c.G788A p.R263Q . . . KIAA1009 22832 broad.mit.edu 36 6 84951764 84951764 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014895 exon13 c.C1523T p.A508V . . . ZNF292 23036 broad.mit.edu 36 6 88025804 88025804 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015021 exon8 c.C5738A p.A1913D . . . SRSF12 135295 broad.mit.edu 36 6 89873616 89873616 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080743 exon2 c.G146A p.R49H . . . ANKRD6 22881 broad.mit.edu 36 6 90369521 90369521 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014942 exon4 c.G274A p.A92T . . . MDN1 23195 broad.mit.edu 36 6 90485463 90485463 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014611 exon42 c.A6065G p.Y2022C . . . C6orf103 79747 broad.mit.edu 36 6 147178020 147178020 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_024694 exon36 c.4978delA p.K1660fs . . . MUC17 140453 broad.mit.edu 36 7 100463382 100463382 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040105 exon3 c.C1965T p.D655D . . . SERPINE1 5054 broad.mit.edu 36 7 100560462 100560462 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000602 exon3 c.G312A p.E104E . . . FBXL13 222235 broad.mit.edu 36 7 102353970 102353970 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001111038 exon10 c.C865T p.R289X . . . FBXL13 222235 broad.mit.edu 36 7 102359572 102359572 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001111038 exon9 c.A769C p.T257P . . . RELN 5649 broad.mit.edu 36 7 103125724 103125724 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005045 exon10 c.G955A p.A319T . . . COG5 10466 broad.mit.edu 36 7 106840309 106840309 + Silent SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001161520 exon7 c.T636C p.Y212Y . . . PHF14 9678 broad.mit.edu 36 7 11034891 11034891 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014660 exon7 c.A1376T p.D459V . . . LRRN3 54674 broad.mit.edu 36 7 110550754 110550754 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018334 exon2 c.C690T p.N230N . . . CFTR 1080 broad.mit.edu 36 7 117019408 117019408 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000492 exon14 c.G1951A p.D651N . . . C7orf58 79974 broad.mit.edu 36 7 120527370 120527370 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024913 exon7 c.C904T p.R302C . . . IQUB 154865 broad.mit.edu 36 7 122888813 122888813 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178827 exon11 c.C1841T p.S614F . . . WASL 8976 broad.mit.edu 36 7 123119826 123119826 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003941 exon9 c.G1158A p.P386P . . . TNPO3 23534 broad.mit.edu 36 7 128402164 128402164 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012470 exon18 c.C2267T p.A756V . . . CNOT4 4850 broad.mit.edu 36 7 134729541 134729541 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190850 exon10 c.G1296A p.S432S . . . PARP12 64761 broad.mit.edu 36 7 139370982 139370982 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022750 exon12 c.C1953T p.C651C . . . BRAF 673 broad.mit.edu 36 7 140099605 140099605 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004333 exon15 c.T1799A p.V600E BRAF,pituitary,NS,Substitution - Missense,0 . . CNTNAP2 26047 broad.mit.edu 36 7 147737450 147737450 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014141 exon23 c.C3750T p.G1250G . . . CUL1 8454 broad.mit.edu 36 7 148128566 148128566 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003592 exon22 c.C2290T p.R764X . . . ZNF777 27153 broad.mit.edu 36 7 148759900 148759900 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015694 exon6 c.C2396T p.A799V . . . ABP1 26 broad.mit.edu 36 7 150189152 150189152 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001091 exon5 c.C2178T p.V726V . . . ABCB8 11194 broad.mit.edu 36 7 150363957 150363957 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007188 exon7 c.G983A p.R328H . . . MLL3 58508 broad.mit.edu 36 7 151510361 151510361 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170606 exon36 c.G5517A p.T1839T . . . PTPRN2 5799 broad.mit.edu 36 7 157141940 157141940 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130843 exon13 c.G1979A p.R660H . . . SNX13 23161 broad.mit.edu 36 7 17881900 17881900 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015132 exon6 c.G479A p.R160H . . . MAD1L1 8379 broad.mit.edu 36 7 1904426 1904426 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013836 exon18 c.C1934T p.T645M . . . C7orf27 221927 broad.mit.edu 36 7 2551180 2551180 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_152743 exon4 c.G319T p.G107X . . . SNX10 29887 broad.mit.edu 36 7 26378049 26378049 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199837 exon4 c.C386T p.A129V . . . HOXA11 3207 broad.mit.edu 36 7 27189071 27189071 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005523 exon2 c.C811T p.R271C . . . SDK1 221935 broad.mit.edu 36 7 3975569 3975569 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152744 exon11 c.G1701A p.T567T . . . CDK13 8621 broad.mit.edu 36 7 40052066 40052066 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003718 exon6 c.G2460T p.Q820H . . . INHBA 3624 broad.mit.edu 36 7 41695924 41695924 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002192 exon3 c.G1130A p.R377H . . . HECW1 23072 broad.mit.edu 36 7 43450421 43450421 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015052 exon11 c.C1125T p.S375S . . . DBNL 28988 broad.mit.edu 36 7 44062954 44062954 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014063 exon5 c.A401T p.K134M . . . NPC1L1 29881 broad.mit.edu 36 7 44540613 44540613 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013389 exon6 c.C2124T p.S708S . . . HUS1 3364 broad.mit.edu 36 7 47982855 47982855 + Silent SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004507 exon4 c.T462C p.P154P . . . C7orf57 136288 broad.mit.edu 36 7 48052681 48052681 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001100159 exon5 c.C450T p.F150F . . . ABCA13 154664 broad.mit.edu 36 7 48413930 48413930 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152701 exon37 c.T11815C p.C3939R . . . IKZF1 10320 broad.mit.edu 36 7 50435666 50435666 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_006060 exon8 c.G1407A p.V469V . . . POM121L12 285877 broad.mit.edu 36 7 53071153 53071153 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182595 exon1 c.C295T p.R99C . . . PSPH 5723 broad.mit.edu 36 7 56054878 56054878 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_004577 exon5 c.C184G p.L62V . . . BAZ1B 9031 broad.mit.edu 36 7 72529680 72529680 + Silent SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032408 exon7 c.T2047C p.L683L . . . ICA1 3382 broad.mit.edu 36 7 8145163 8145163 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004968 exon11 c.G995A p.G332D . . . PCLO 27445 broad.mit.edu 36 7 82225836 82225836 + Silent SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033026 exon25 c.A15420G p.Q5140Q . . . PCLO 27445 broad.mit.edu 36 7 82383669 82383669 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033026 exon7 c.A11569G p.R3857G . . . PEX1 5189 broad.mit.edu 36 7 91984577 91984577 + Silent SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000466 exon5 c.T1188C p.N396N . . . TAC1 6863 broad.mit.edu 36 7 97201013 97201013 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013997 exon3 c.G166A p.A56T . . . SMURF1 57154 broad.mit.edu 36 7 98487816 98487816 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020429 exon7 c.G669A p.T223T . . . RINT1 60561 broad.mit.edu 36 7 104970138 104970138 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_021930 exon4 c.321delA p.L107fs . . . RP1L1 94137 broad.mit.edu 36 8 10506154 10506154 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178857 exon4 c.C2864A p.A955D . . . RIMS2 9699 broad.mit.edu 36 8 105070710 105070710 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001100117 exon17 c.C2929T p.R977W . . . PKHD1L1 93035 broad.mit.edu 36 8 110510817 110510817 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177531 exon26 c.A3073G p.R1025G . . . CSMD3 114788 broad.mit.edu 36 8 113911132 113911132 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198123 exon12 c.C1818T p.G606G . . . BLK 640 broad.mit.edu 36 8 11450323 11450323 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001715 exon8 c.G693T p.Q231H . . . SLC30A8 169026 broad.mit.edu 36 8 118252510 118252510 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173851 exon7 c.G886A p.G296R . . . HAS2 3037 broad.mit.edu 36 8 122710246 122710246 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005328 exon2 c.G516A p.T172T . . . FAM83A 84985 broad.mit.edu 36 8 124273296 124273296 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032899 exon2 c.C553T p.R185C . . . DLC1 10395 broad.mit.edu 36 8 12987743 12987743 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182643 exon18 c.G4535A p.R1512Q . . . DLC1 10395 broad.mit.edu 36 8 13002224 13002224 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182643 exon9 c.C1993T p.R665C . . . ADCY8 114 broad.mit.edu 36 8 131881975 131881975 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001115 exon15 c.C2939A p.A980D . . . DLC1 10395 broad.mit.edu 36 8 13303474 13303474 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182643 exon3 c.C1049T p.A350V . . . PHF20L1 51105 broad.mit.edu 36 8 133906767 133906767 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_016018 exon14 c.G1713A p.K571K . . . TG 7038 broad.mit.edu 36 8 133968067 133968067 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003235 exon9 c.G1268A p.R423H . . . SLA 6503 broad.mit.edu 36 8 134126497 134126497 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001045556 exon7 c.G398A p.R133H . . . KCNK9 51305 broad.mit.edu 36 8 140784352 140784352 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016601 exon1 c.C66T p.G22G KCNK9,lung,NS,Substitution - coding silent,0 . . DENND3 22898 broad.mit.edu 36 8 142273411 142273411 + Missense_Mutation SNP C A A rs61743929 unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014957 exon23 c.C3494A p.A1165E . . . GML 2765 broad.mit.edu 36 8 143925044 143925044 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002066 exon4 c.G413A p.R138K . . . TNFRSF10B 8795 broad.mit.edu 36 8 22944237 22944237 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003842 exon3 c.G344A p.R115H . . . ENTPD4 9583 broad.mit.edu 36 8 23353225 23353225 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004901 exon9 c.A1031T p.N344I . . . STMN4 81551 broad.mit.edu 36 8 27154669 27154669 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A A A A Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_030795 exon5 c.T218C p.V73A . . . EXTL3 2137 broad.mit.edu 36 8 28651007 28651007 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001440 exon5 c.G2329A p.A777T . . . MYST3 7994 broad.mit.edu 36 8 41955372 41955372 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099413 exon7 c.C988T p.R330C . . . PXDNL 137902 broad.mit.edu 36 8 52421026 52421026 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144651 exon20 c.G3936A p.T1312T . . . NPBWR1 2831 broad.mit.edu 36 8 54015720 54015720 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005285 exon1 c.C700T p.R234W . . . TCEA1 6917 broad.mit.edu 36 8 55054221 55054221 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201437 exon7 c.C679T p.H227Y . . . CHD7 55636 broad.mit.edu 36 8 61817660 61817660 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017780 exon2 c.C1115A p.S372X . . . CHD7 55636 broad.mit.edu 36 8 61913333 61913333 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017780 exon19 c.A4498G p.I1500V . . . MYBL1 4603 broad.mit.edu 36 8 67650842 67650842 + Missense_Mutation SNP G A A rs61753806 unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080416 exon10 c.C1424T p.A475V . . . PRDM14 63978 broad.mit.edu 36 8 71127068 71127068 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024504 exon8 c.G1514A p.R505H . . . KCNB2 9312 broad.mit.edu 36 8 74011038 74011038 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004770 exon3 c.C894T p.R298R . . . STAU2 27067 broad.mit.edu 36 8 74763573 74763573 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164384 exon3 c.G48A p.E16E . . . ZFHX4 79776 broad.mit.edu 36 8 77925726 77925726 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024721 exon10 c.G4014T p.K1338N . . . FABP5 2171 broad.mit.edu 36 8 82355389 82355389 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001444 exon1 c.G4A p.A2T . . . NBN 4683 broad.mit.edu 36 8 91029231 91029231 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002485 exon12 c.A1911G p.I637M . . . TMEM67 91147 broad.mit.edu 36 8 94890279 94890279 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153704 exon24 c.C2475G p.N825K . . . ESRP1 54845 broad.mit.edu 36 8 95774135 95774135 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017697 exon14 c.C1875T p.S625S . . . PTDSS1 9791 broad.mit.edu 36 8 97391014 97391014 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014754 exon9 c.G1061A p.C354Y . . . BAT2L1 84726 broad.mit.edu 36 9 133340607 133340608 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_013318 exon15 c.3270_3271insG p.G1090fs . . . ALDOB 229 broad.mit.edu 36 9 103227029 103227029 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000035 exon8 c.C916A p.L306M . . . FOXD4 2298 broad.mit.edu 36 9 108098 108098 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207305 exon1 c.C22T p.R8C . . . ZNF483 158399 broad.mit.edu 36 9 113329831 113329831 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T T T T Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_001007169 exon2 c.T335C p.V112A . . . AKNA 80709 broad.mit.edu 36 9 116149936 116149936 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T G T G Unknown Valid Germline Phase_I Capture Illumina Illumina HiSeq NM_030767 exon16 c.A3287C p.H1096P . . . PAPPA 5069 broad.mit.edu 36 9 117990136 117990136 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_002581 exon2 c.C1298T p.T433M . . . OR1L4 254973 broad.mit.edu 36 9 124526859 124526859 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005235 exon1 c.T770A p.I257N . . . OLFML2A 169611 broad.mit.edu 36 9 126612268 126612268 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_182487 exon8 c.G1715A p.R572Q . . . TYRP1 7306 broad.mit.edu 36 9 12684121 12684121 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000550 exon2 c.G125A p.C42Y . . . STXBP1 6812 broad.mit.edu 36 9 129463268 129463268 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003165 exon6 c.C392T p.T131M . . . ST6GALNAC6 30815 broad.mit.edu 36 9 129692978 129692978 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013443 exon5 c.G463A p.V155I . . . DNM1 1759 broad.mit.edu 36 9 130036192 130036192 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005336 exon11 c.C1407T p.G469G . . . BRD3 8019 broad.mit.edu 36 9 135900334 135900334 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_007371 exon7 c.G1117A p.A373T . . . UBAC1 10422 broad.mit.edu 36 9 137979521 137979521 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016172 exon4 c.G385A p.A129T . . . MAN1B1 11253 broad.mit.edu 36 9 139114131 139114131 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016219 exon6 c.T893C p.M298T . . . IFNA16 3449 broad.mit.edu 36 9 21206889 21206889 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002173 exon1 c.C416T p.S139F . . . RFX3 5991 broad.mit.edu 36 9 3252957 3252957 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_134428 exon14 c.G1583A p.R528H . . . TAF1L 138474 broad.mit.edu 36 9 32620111 32620111 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153809 exon1 c.G5467A p.G1823R . . . KIF24 347240 broad.mit.edu 36 9 34246069 34246069 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194313 exon11 c.C3536T p.T1179M . . . SIGMAR1 10280 broad.mit.edu 36 9 34625739 34625739 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_147157 exon3 c.G469A p.D157N . . . UNC13B 10497 broad.mit.edu 36 9 35389698 35389698 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006377 exon35 c.T4061C p.V1354A . . . UNC13B 10497 broad.mit.edu 36 9 35393891 35393891 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_006377 exon39 c.G4637A p.C1546Y . . . FBXO10 26267 broad.mit.edu 36 9 37527509 37527509 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012166 exon3 c.G1017T p.E339D . . . INSL6 11172 broad.mit.edu 36 9 5153996 5153996 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007179 exon2 c.G559T p.E187X . . . KIAA2026 158358 broad.mit.edu 36 9 5909744 5909744 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017969 exon8 c.G6252A p.A2084A . . . TRPM3 80036 broad.mit.edu 36 9 72340910 72340910 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007471 exon25 c.G4903A p.A1635T . . . TLE4 7091 broad.mit.edu 36 9 81432124 81432124 + De_novo_Start_OutOfFrame SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007005 exon6 c.G331A p.V111M . . . NTRK2 4915 broad.mit.edu 36 9 86760228 86760228 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006180 exon19 c.C2148T p.D716D . . . DAPK1 1612 broad.mit.edu 36 9 89511653 89511653 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004938 exon26 c.A3847G p.M1283V . . . C9orf79 286234 broad.mit.edu 36 9 89690163 89690163 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178828 exon4 c.C941T p.T314I . . . SEMA4D 10507 broad.mit.edu 36 9 91196127 91196127 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142287 exon11 c.G646A p.V216M . . . PTCH1 5727 broad.mit.edu 36 9 97271088 97271088 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001083605 exon14 c.G1563A p.T521T . . . C9orf156 51531 broad.mit.edu 36 9 99712631 99712631 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016481 exon4 c.G498A p.P166P . . . RAB9B 51209 broad.mit.edu 36 X 102966991 102966991 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016370 exon3 c.A380G p.D127G . . . PSMD10 5716 broad.mit.edu 36 X 107217847 107217847 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002814 exon3 c.A352G p.R118G . . . TRPC5 7224 broad.mit.edu 36 X 111042387 111042387 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012471 exon3 c.C688T p.L230F . . . DOCK11 139818 broad.mit.edu 36 X 117584010 117584010 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144658 exon8 c.C708T p.R236R . . . ACTRT1 139741 broad.mit.edu 36 X 127012804 127012804 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138289 exon1 c.C1063T p.Q355X . . . ACTRT1 139741 broad.mit.edu 36 X 127013030 127013030 + Silent SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138289 exon1 c.C837A p.V279V . . . AIFM1 9131 broad.mit.edu 36 X 129111135 129111135 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145812 exon3 c.C327T p.A109A . . . SLC25A14 9016 broad.mit.edu 36 X 129326384 129326384 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003951 exon7 c.C696T p.G232G . . . IGSF1 3547 broad.mit.edu 36 X 130244686 130244686 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001170962 exon5 c.G874A p.A292T . . . FAM127B 26071 broad.mit.edu 36 X 134013749 134013749 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134321 exon1 c.C56T p.A19V . . . AFF2 2334 broad.mit.edu 36 X 147551410 147551410 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002025 exon3 c.C470A p.P157H . . . HMGB3 3149 broad.mit.edu 36 X 149907018 149907018 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005342 exon5 c.G576A p.E192E . . . ZNF275 10838 broad.mit.edu 36 X 152265786 152265786 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_001080485 exon4 c.G449T p.S150I . . . AVPR2 554 broad.mit.edu 36 X 152824909 152824909 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000054 exon2 c.G755A p.R252Q . . . AVPR2 554 broad.mit.edu 36 X 152825273 152825273 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000054 exon3 c.G1013A p.S338N . . . ZRSR2 8233 broad.mit.edu 36 X 15718544 15718544 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005089 exon1 c.C5A p.A2D . . . TXLNG 55787 broad.mit.edu 36 X 16760733 16760733 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018360 exon6 c.A931G p.T311A . . . PHKA2 5256 broad.mit.edu 36 X 18854554 18854554 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_000292 exon14 c.C1397T p.A466V . . . PHKA2 5256 broad.mit.edu 36 X 18876855 18876855 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000292 exon5 c.C465G p.I155M . . . ZFX 7543 broad.mit.edu 36 X 24135831 24135831 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001178095 exon5 c.T878C p.V293A . . . ARX 170302 broad.mit.edu 36 X 24943684 24943684 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139058 exon1 c.G92A p.S31N . . . DCAF8L1 139425 broad.mit.edu 36 X 27908495 27908495 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017930 exon1 c.C878T p.A293V . . . MAGEB1 4112 broad.mit.edu 36 X 30179313 30179313 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002363 exon4 c.C782A p.P261H . . . TAB3 257397 broad.mit.edu 36 X 30787549 30787549 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152787 exon5 c.C78T p.G26G . . . DMD 1756 broad.mit.edu 36 X 31054704 31054704 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004015 exon17 c.T1818A p.N606K . . . DMD 1756 broad.mit.edu 36 X 31702045 31702045 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004021 exon8 c.A115T p.M39L . . . DMD 1756 broad.mit.edu 36 X 32376519 32376519 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004006 exon27 c.T3761C p.L1254P . . . CASK 8573 broad.mit.edu 36 X 41415713 41415713 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001126054 exon6 c.C444T p.L148L . . . UBA1 7317 broad.mit.edu 36 X 46945874 46945874 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153280 exon8 c.C732T p.S244S . . . PORCN 64840 broad.mit.edu 36 X 48254654 48254654 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203474 exon2 c.G164A p.S55N . . . WDR13 64743 broad.mit.edu 36 X 48343662 48343662 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001166426 exon4 c.C259T p.R87C . . . GRIPAP1 56850 broad.mit.edu 36 X 48740815 48740815 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020137 exon2 c.G88A p.E30K . . . PPP1R3F 89801 broad.mit.edu 36 X 49013664 49013664 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033215 exon1 c.C388T p.R130C . . . HUWE1 10075 broad.mit.edu 36 X 53632171 53632171 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031407 exon37 c.A4510C p.T1504P . . . USP51 158880 broad.mit.edu 36 X 55531979 55531979 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_201286 exon2 c.C119A p.A40E . . . ZXDA 7789 broad.mit.edu 36 X 57952515 57952515 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007156 exon1 c.G1065A p.E355E . . . NLGN4X 57502 broad.mit.edu 36 X 5831415 5831415 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020742 exon5 c.C1304T p.T435M . . . NLGN4X 57502 broad.mit.edu 36 X 5831624 5831624 + Silent SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020742 exon5 c.C1095T p.Y365Y . . . OPHN1 4983 broad.mit.edu 36 X 67209831 67209831 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002547 exon20 c.G1722A p.P574P . . . STARD8 9754 broad.mit.edu 36 X 67860310 67860310 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014725 exon12 c.C2677T p.R893W . . . AWAT1 158833 broad.mit.edu 36 X 69376410 69376410 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013579 exon6 c.C733T p.R245C . . . KIF4A 24137 broad.mit.edu 36 X 69556654 69556654 + Silent SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012310 exon31 c.C3513T p.C1171C . . . TEX11 56159 broad.mit.edu 36 X 69747082 69747082 + Silent SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001003811 exon22 c.T1833C p.N611N . . . SLC7A3 84889 broad.mit.edu 36 X 70065154 70065154 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032803 exon4 c.G584A p.G195D . . . MED12 9968 broad.mit.edu 36 X 70257711 70257711 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005120 exon5 c.C719T p.A240V . . . GJB1 2705 broad.mit.edu 36 X 70360830 70360830 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000166 exon2 c.G548A p.R183H . . . NAP1L2 4674 broad.mit.edu 36 X 72349828 72349828 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021963 exon1 c.C1226A p.S409X . . . PNPLA4 8228 broad.mit.edu 36 X 7854159 7854159 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004650 exon2 c.T2C p.M1T . . . TBX22 50945 broad.mit.edu 36 X 79169004 79169004 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001109878 exon6 c.C779T p.T260M . . . HDX 139324 broad.mit.edu 36 X 83485999 83485999 + Silent SNP T C C novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001177479 exon7 c.A1575G p.P525P . . . SAT1 6303 broad.mit.edu 36 X 23712068 23712068 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3949-01A-01W-0995-10 TCGA-AA-3949-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . .