Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
PTPLA	9200	broad.mit.edu	36	10	17676328	17676328	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014241	exon6	c.C666T	p.Y222Y	.	.	.
ZMYND11	10771	broad.mit.edu	36	10	257147	257147	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_212479	exon4	c.G289C	p.E97Q	.	.	.
MYPN	84665	broad.mit.edu	36	10	69595516	69595516	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032578	exon9	c.G1535A	p.C512Y	.	.	.
HNRNPH3	3189	broad.mit.edu	36	10	69767018	69767018	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012207	exon2	c.G34A	p.D12N	.	.	.
GRIA4	2893	broad.mit.edu	36	11	105300589	105300589	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001077243	exon12	c.G1731A	p.E577E	.	.	.
SIDT2	51092	broad.mit.edu	36	11	116565280	116565280	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001040455	exon15	c.G1372C	p.V458L	.	.	.
KIRREL3	84623	broad.mit.edu	36	11	125848523	125848523	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032531	exon5	c.G482A	p.R161H	.	.	.
OR52B4	143496	broad.mit.edu	36	11	4345888	4345888	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001005161	exon1	c.G214A	p.D72N	.	.	.
OR51F2	119694	broad.mit.edu	36	11	4799369	4799369	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004753	exon1	c.C178T	p.L60L	.	.	.
UBQLNL	143630	broad.mit.edu	36	11	5493653	5493653	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_145053	exon1	c.C595G	p.L199V	.	.	.
OR5D18	219438	broad.mit.edu	36	11	55344117	55344117	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001952	exon1	c.G436C	p.V146L	.	.	.
PATL1	219988	broad.mit.edu	36	11	59167009	59167009	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152716	exon16	c.C1969T	p.R657X	.	.	.
MS4A5	64232	broad.mit.edu	36	11	59953841	59953841	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_023945	exon1	c.C118A	p.Q40K	.	.	.
NXF1	10482	broad.mit.edu	36	11	62318389	62318389	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006362	exon19	c.G1677A	p.P559P	.	.	.
MRPL21	219927	broad.mit.edu	36	11	68417471	68417471	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_181514	exon5	c.C425T	p.T142M	.	.	.
MYO7A	4647	broad.mit.edu	36	11	76592860	76592860	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000260	exon39	c.C5418T	p.A1806A	.	.	.
CLEC9A	283420	broad.mit.edu	36	12	10109480	10109480	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_207345	exon9	c.G708A	p.A236A	.	.	.
WSCD2	9671	broad.mit.edu	36	12	107128059	107128059	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014653	exon4	c.G529A	p.A177T	.	.	.
KIAA0528	9847	broad.mit.edu	36	12	22515091	22515091	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014802	exon21	c.A2380T	p.I794F	.	.	.
PDZRN4	29951	broad.mit.edu	36	12	40253494	40253494	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001164595	exon10	c.T2646C	p.C882C	.	.	.
NELL2	4753	broad.mit.edu	36	12	43459729	43459729	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001145108	exon5	c.C590T	p.A197V	.	.	.
MMP19	4327	broad.mit.edu	36	12	54517920	54517920	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002429	exon7	c.G1034A	p.R345Q	.	.	.
CLSTN3	9746	broad.mit.edu	36	12	7180741	7180741	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014718	exon7	c.C978T	p.A326A	.	.	.
ITGBL1	9358	broad.mit.edu	36	13	100904447	100904447	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004791	exon2	c.G311A	p.C104Y	.	.	.
PABPC3	5042	broad.mit.edu	36	13	24568864	24568864	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_030979	exon1	c.T528C	p.R176R	.	.	.
POSTN	10631	broad.mit.edu	36	13	37052705	37052705	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001135934	exon11	c.C1522T	p.R508C	.	.	.
ZC3H13	23091	broad.mit.edu	36	13	45457499	45457499	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015070	exon10	c.C1654T	p.R552X	.	.	.
PCDH20	64881	broad.mit.edu	36	13	60885588	60885588	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022843	exon2	c.G645A	p.S215S	.	.	.
PCDH9	5101	broad.mit.edu	36	13	66699517	66699517	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020403	exon2	c.G1057A	p.D353N	.	.	.
DLGAP5	9787	broad.mit.edu	36	14	54707189	54707189	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001146015	exon11	c.G1371A	p.L457L	.	.	.
KCNH5	27133	broad.mit.edu	36	14	62523632	62523632	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_172376	exon5	c.C286T	p.R96W	.	.	.
CHGA	1113	broad.mit.edu	36	14	92467707	92467707	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001275	exon6	c.G715C	p.A239P	.	.	.
EXD1	161829	broad.mit.edu	36	15	39263752	39263752	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152596	exon10	c.A1214T	p.E405V	.	.	.
RPL4	6124	broad.mit.edu	36	15	64582136	64582136	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000968	exon4	c.C289T	p.R97C	.	.	.
PEX11A	8800	broad.mit.edu	36	15	88028073	88028073	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003847	exon3	c.A283T	p.I95F	.	.	.
RAB40C	57799	broad.mit.edu	36	16	617580	617581	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001172664	exon7	c.803_804insC	p.S268fs	.	.	.
COX6A2	1339	broad.mit.edu	36	16	31346631	31346631	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005205	exon3	c.G259A	p.V87M	.	.	.
SALL1	6299	broad.mit.edu	36	16	49732958	49732958	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002968	exon2	c.G676A	p.V226I	.	.	.
KIAA1609	57707	broad.mit.edu	36	16	83089160	83089160	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020947	exon2	c.T34C	p.F12L	.	.	.
GALNS	2588	broad.mit.edu	36	16	87429162	87429162	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000512	exon8	c.G858A	p.T286T	.	.	.
GPR172B	55065	broad.mit.edu	36	17	4877353	4877354	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001104577	exon4	c.1061_1062insG	p.A354fs	.	.	.
BAIAP2	10458	broad.mit.edu	36	17	76704217	76704218	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001144888	exon14	c.1588_1589insC	p.A530fs	.	.	.
NF1	4763	broad.mit.edu	36	17	26586873	26586873	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000267	exon28	c.G3827A	p.R1276Q	 NF1,large_intestine,colon,Substitution - Missense,0 	.	.
SLFN13	146857	broad.mit.edu	36	17	30792419	30792419	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_144682	exon6	c.G2002A	p.D668N	.	.	.
ITGAE	3682	broad.mit.edu	36	17	3601717	3601717	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002208	exon15	c.C1869T	p.D623D	.	.	.
KRT27	342574	broad.mit.edu	36	17	36189616	36189616	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_181537	exon4	c.G708A	p.A236A	.	.	.
SOST	50964	broad.mit.edu	36	17	39191515	39191515	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_025237	exon1	c.G121A	p.G41R	.	.	.
RNF43	54894	broad.mit.edu	36	17	53791149	53791149	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017763	exon9	c.T987A	p.S329S	.	.	.
ARSG	22901	broad.mit.edu	36	17	63851512	63851512	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014960	exon3	c.G391A	p.V131I	.	.	.
TP53	7157	broad.mit.edu	36	17	7519138	7519138	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon5	c.G517A	p.V173M	 TP53,autonomic_ganglia,NS,Substitution - Missense,0 	.	.
RAB40B	10966	broad.mit.edu	36	17	78209227	78209227	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006822	exon6	c.C638T	p.P213L	.	.	.
LAMA3	3909	broad.mit.edu	36	18	19653889	19653889	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198129	exon19	c.G2234A	p.R745Q	.	.	.
MEX3C	51320	broad.mit.edu	36	18	46957074	46957074	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016626	exon2	c.C1625T	p.P542L	.	.	.
CRTC1	23373	broad.mit.edu	36	19	18748992	18748993	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	-	-	-	C	-	C	Unknown	Valid	Germline	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015321	exon14	c.1705_1706insC	p.S569fs	.	.	.
NDUFA13	51079	broad.mit.edu	36	19	19488085	19488086	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015965	exon1	c.38_39insG	p.P13fs	.	.	.
DMWD	1762	broad.mit.edu	36	19	50987486	50987487	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004943	exon1	c.369_370insG	p.G123fs	.	.	.
DNMT1	1786	broad.mit.edu	36	19	10126386	10126386	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001130823	exon21	c.G1708A	p.A570T	.	.	.
ZNF569	148266	broad.mit.edu	36	19	42595454	42595454	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152484	exon6	c.T1946G	p.L649R	.	.	.
FBL	2091	broad.mit.edu	36	19	45023184	45023184	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001436	exon2	c.G94A	p.G32R	.	.	.
SHANK1	50944	broad.mit.edu	36	19	55881863	55881863	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016148	exon19	c.C2408T	p.A803V	.	.	.
CACNG7	59284	broad.mit.edu	36	19	59107907	59107907	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_031896	exon1	c.T10A	p.C4S	.	.	.
ZNF470	388566	broad.mit.edu	36	19	61781506	61781506	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001001668	exon6	c.C1897T	p.R633C	.	.	.
AURKC	6795	broad.mit.edu	36	19	62435850	62435850	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003160	exon4	c.G323A	p.R108H	.	.	.
COL5A3	50509	broad.mit.edu	36	19	9949092	9949092	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015719	exon43	c.G3183A	p.G1061G	.	.	.
UBE4B	10277	broad.mit.edu	36	1	10054679	10054679	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001105562	exon2	c.C31T	p.R11W	.	.	.
VCAM1	7412	broad.mit.edu	36	1	100961337	100961337	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001199834	exon3	c.T328C	p.S110P	.	.	.
MTOR	2475	broad.mit.edu	36	1	11213997	11213997	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004958	exon17	c.G2596A	p.E866K	.	.	.
IGSF3	3321	broad.mit.edu	36	1	116960547	116960547	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001542	exon3	c.G99A	p.T33T	.	.	.
SV2A	9900	broad.mit.edu	36	1	148149044	148149044	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014849	exon4	c.G913A	p.V305M	.	.	.
PEA15	8682	broad.mit.edu	36	1	158447971	158447971	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003768	exon2	c.G13A	p.G5R	.	.	.
SPEN	23013	broad.mit.edu	36	1	16118065	16118065	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015001	exon7	c.G1453A	p.D485N	.	.	.
HMCN1	83872	broad.mit.edu	36	1	184349808	184349808	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_031935	exon73	c.G11206A	p.A3736T	.	.	.
PRG4	10216	broad.mit.edu	36	1	184542792	184542792	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127709	exon5	c.C1039A	p.P347T	.	.	.
PTPRC	5788	broad.mit.edu	36	1	196988066	196988066	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_080921	exon27	c.A2784C	p.K928N	.	.	.
REN	5972	broad.mit.edu	36	1	202390858	202390858	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000537	exon10	c.C1130A	p.P377H	.	.	.
HHAT	55733	broad.mit.edu	36	1	208704477	208704477	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018194	exon8	c.C862G	p.L288V	.	.	.
EPHB2	2048	broad.mit.edu	36	1	23108171	23108171	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017449	exon13	c.G2422A	p.D808N	.	.	.
FMN2	56776	broad.mit.edu	36	1	238559263	238559263	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020066	exon10	c.T4309C	p.F1437L	.	.	.
AHCTF1	25909	broad.mit.edu	36	1	245132461	245132461	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015446	exon8	c.G1133A	p.G378D	.	.	.
CSMD2	114784	broad.mit.edu	36	1	33981648	33981648	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_052896	exon14	c.G1873A	p.V625M	.	.	.
LRRC42	115353	broad.mit.edu	36	1	54196488	54196488	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052940	exon3	c.G552A	p.K184K	.	.	.
CHD5	26038	broad.mit.edu	36	1	6110783	6110783	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015557	exon25	c.C3813T	p.D1271D	.	.	.
DOCK7	85440	broad.mit.edu	36	1	62863531	62863531	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033407	exon12	c.A1412T	p.N471I	.	.	.
CAMTA1	23261	broad.mit.edu	36	1	7719972	7719972	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015215	exon15	c.C3413T	p.S1138L	.	.	.
ARHGEF16	27237	broad.mit.edu	36	1	3378147	3378147	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CHD6	84181	broad.mit.edu	36	20	39483396	39483396	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032221	exon31	c.G5293C	p.E1765Q	.	.	.
NCOA3	8202	broad.mit.edu	36	20	45713280	45713280	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001174087	exon20	c.C3796G	p.Q1266E	.	.	.
UMODL1	89766	broad.mit.edu	36	21	42420252	42420252	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001199527	exon18	c.G3529A	p.G1177R	.	.	.
UBASH3A	53347	broad.mit.edu	36	21	42736521	42736521	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001895	exon12	c.G1548A	p.P516P	.	.	.
PARVG	64098	broad.mit.edu	36	22	42910617	42910617	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001137606	exon3	c.A75G	p.S25S	.	.	.
MOV10L1	54456	broad.mit.edu	36	22	48933693	48933693	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001164104	exon22	c.G2985A	p.A995A	.	.	.
FER1L5	90342	broad.mit.edu	36	2	96720931	96720932	+	In_Frame_Ins	INS	-	GGG	GGG	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001113382	exon28	c.2909_2910insGGG	p.E970delinsEG	.	.	.
IL1R1	3554	broad.mit.edu	36	2	102155586	102155586	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000877	exon8	c.A847G	p.N283D	.	.	.
KCNJ3	3760	broad.mit.edu	36	2	155419639	155419640	+	Nonsense_Mutation	DNP	GA	AT	AT	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	GA	GA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002239	exon3	c.1074_1075AT	.	.	.	.
TTN	7273	broad.mit.edu	36	2	179279520	179279520	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_133378	exon99	c.G25594A	p.E8532K	.	.	.
SPHKAP	80309	broad.mit.edu	36	2	228592620	228592620	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001142644	exon7	c.C1194T	p.S398S	.	.	.
SPHKAP	80309	broad.mit.edu	36	2	228592894	228592894	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001142644	exon7	c.A920G	p.Q307R	.	.	.
COLEC11	78989	broad.mit.edu	36	2	3638828	3638828	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_199235	exon3	c.C95T	p.S32L	.	.	.
DYNC2LI1	51626	broad.mit.edu	36	2	43890364	43890364	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001193464	exon13	c.A1013C	p.K338T	.	.	.
PDCD6IP	10015	broad.mit.edu	36	3	33815278	33815279	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013374	exon1	c.54_55insA	p.A18fs	.	.	.
EPHB1	2047	broad.mit.edu	36	3	136394118	136394118	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004441	exon11	c.A1893G	p.G631G	.	.	.
ZBBX	79740	broad.mit.edu	36	3	168443120	168443120	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024687	exon20	c.T2143A	p.S715T	.	.	.
PIK3CA	5290	broad.mit.edu	36	3	180418786	180418786	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006218	exon10	c.A1634C	p.E545A	 PIK3CA,urinary_tract,bladder,Substitution - Missense,+1 	.	.
PLXNB1	5364	broad.mit.edu	36	3	48436444	48436444	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002673	exon11	c.G2255C	p.G752A	.	.	.
CPEB2	132864	broad.mit.edu	36	4	14677092	14677092	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001177383	exon11	c.G3005A	p.R1002H	.	.	.
SLIT2	9353	broad.mit.edu	36	4	20121848	20121848	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004787	exon11	c.C1048G	p.L350V	.	.	.
ARAP2	116984	broad.mit.edu	36	4	35865482	35865482	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015230	exon8	c.G1664T	p.R555I	.	.	.
NAA11	84779	broad.mit.edu	36	4	80465512	80465512	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032693	exon1	c.G544A	p.G182S	.	.	.
ATP6AP1L	92270	broad.mit.edu	36	5	81636508	81636509	+	Splice_Site	INS	-	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	.	.	.	.	.	.	.
IL3	3562	broad.mit.edu	36	5	131425967	131425967	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000588	exon3	c.G268A	p.A90T	.	.	.
PCDHGA6	56109	broad.mit.edu	36	5	140734033	140734033	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032086	exon1	c.G199A	p.V67I	.	.	.
PLEKHG4B	153478	broad.mit.edu	36	5	197997	197997	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052909	exon4	c.G799A	p.A267T	.	.	.
CDH9	1007	broad.mit.edu	36	5	26951769	26951769	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016279	exon3	c.A249G	p.K83K	.	.	.
CRHBP	1393	broad.mit.edu	36	5	76285253	76285253	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001882	exon2	c.G153C	p.E51D	.	.	.
APC	324	broad.mit.edu	36	5	112203514	112203514	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.4270delC	p.P1424fs	 APC,large_intestine,right,Substitution - coding silent,-2 	.	.
ASCC3	10973	broad.mit.edu	36	6	101183740	101183740	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006828	exon27	c.A4247T	p.K1416I	.	.	.
TAAR2	9287	broad.mit.edu	36	6	132980525	132980525	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001033080	exon2	c.T513A	p.P171P	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152495004	152495004	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015293	exon59	c.C9612A	p.T3204T	.	.	.
FNDC1	84624	broad.mit.edu	36	6	159573053	159573053	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032532	exon11	c.C1519G	p.L507V	.	.	.
MBOAT1	154141	broad.mit.edu	36	6	20221162	20221162	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080480	exon11	c.C1133T	p.A378V	.	.	.
GRM4	2914	broad.mit.edu	36	6	34116018	34116018	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000841	exon7	c.G1421A	p.R474H	.	.	.
DNAH8	1769	broad.mit.edu	36	6	39050167	39050167	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001371	exon83	c.C12067T	p.R4023C	.	.	.
C6orf64	55776	broad.mit.edu	36	6	39181316	39181316	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018322	exon2	c.C422T	p.P141L	.	.	.
EFHC1	114327	broad.mit.edu	36	6	52411226	52411226	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018100	exon3	c.C451T	p.R151C	.	.	.
LCA5	167691	broad.mit.edu	36	6	80255580	80255580	+	Nonsense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_181714	exon8	c.A1171T	p.K391X	.	.	.
BACH2	60468	broad.mit.edu	36	6	90717977	90717977	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_021813	exon7	c.T569A	p.I190N	.	.	.
ATG9B	285973	broad.mit.edu	36	7	150352309	150352310	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_173681	exon1	c.135_136insG	p.G45fs	.	.	.
HBP1	26959	broad.mit.edu	36	7	106610239	106610239	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012257	exon3	c.A355G	p.T119A	.	.	.
COG5	10466	broad.mit.edu	36	7	106955008	106955008	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001161520	exon6	c.C541T	p.R181C	.	.	.
PTPRZ1	5803	broad.mit.edu	36	7	121438695	121438695	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002851	exon12	c.G2359T	p.A787S	.	.	.
ACCN3	9311	broad.mit.edu	36	7	150380200	150380200	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020321	exon9	c.G1401A	p.K467K	.	.	.
ELMO1	9844	broad.mit.edu	36	7	36861776	36861776	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001039459	exon7	c.C649T	p.R217C	.	.	.
SUN3	256979	broad.mit.edu	36	7	48013397	48013397	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152782	exon6	c.G382A	p.E128K	.	.	.
CCDC132	55610	broad.mit.edu	36	7	92719914	92719914	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024553	exon3	c.G115A	p.E39K	.	.	.
COL1A2	1278	broad.mit.edu	36	7	93880947	93880947	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000089	exon27	c.G1567A	p.G523S	.	.	.
VPS13B	157680	broad.mit.edu	36	8	100723342	100723342	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152564	exon34	c.T5348G	p.I1783R	.	.	.
LRP12	29967	broad.mit.edu	36	8	105572909	105572909	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_013437	exon7	c.G1748T	p.R583L	.	.	.
DENND3	22898	broad.mit.edu	36	8	142257370	142257370	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014957	exon16	c.C2489T	p.A830V	.	.	.
MSR1	4481	broad.mit.edu	36	8	16065947	16065947	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138716	exon5	c.A815C	p.Q272P	.	.	.
LOXL2	4017	broad.mit.edu	36	8	23254607	23254607	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002318	exon4	c.C586T	p.R196C	.	.	.
GAPVD1	26130	broad.mit.edu	36	9	127134127	127134127	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015635	exon12	c.C2275T	p.R759C	.	.	.
KIAA1539	80256	broad.mit.edu	36	9	35097646	35097646	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025182	exon3	c.G626T	p.G209V	.	.	.
BTK	695	broad.mit.edu	36	X	100500968	100500968	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000061	exon10	c.G863A	p.R288Q	.	.	.
GLUD2	2747	broad.mit.edu	36	X	120009646	120009646	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012084	exon1	c.C427T	p.R143C	.	.	.
AFF2	2334	broad.mit.edu	36	X	147856089	147856089	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002025	exon14	c.A2989G	p.T997A	.	.	.
FAM47C	442444	broad.mit.edu	36	X	36937591	36937591	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001013736	exon1	c.A1187G	p.K396R	.	.	.