Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
FRMPD2	143162	broad.mit.edu	36	10	49120344	49120344	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001018071	exon5	c.C433A	p.P145T	.	.	.
KCNC1	3746	broad.mit.edu	36	11	17714319	17714319	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004976	exon1	c.C194T	p.A65V	.	.	.
PRMT3	10196	broad.mit.edu	36	11	20381080	20381080	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005788	exon8	c.C745T	p.Q249X	.	.	.
SRRM4	84530	broad.mit.edu	36	12	118076472	118076472	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_194286	exon12	c.G1433A	p.R478Q	.	.	.
GYS2	2998	broad.mit.edu	36	12	21613153	21613153	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021957	exon5	c.C736T	p.R246X	.	.	.
DIP2B	57609	broad.mit.edu	36	12	49371178	49371178	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_173602	exon13	c.C1631G	p.S544W	.	.	.
TMBIM4	51643	broad.mit.edu	36	12	64832395	64832395	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016056	exon3	c.G235A	p.G79R	.	.	.
GRIP1	23426	broad.mit.edu	36	12	65195764	65195764	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001178074	exon7	c.T626C	p.I209T	.	.	.
GLIPR1L2	144321	broad.mit.edu	36	12	74071298	74071298	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152436	exon1	c.G135A	p.L45L	.	.	.
C12orf29	91298	broad.mit.edu	36	12	86963633	86963633	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001009894	exon5	c.C565T	p.L189F	.	.	.
RXFP2	122042	broad.mit.edu	36	13	31274306	31274307	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_130806	exon18	c.2029_2030insT	p.I677fs	.	.	.
TRPC4	7223	broad.mit.edu	36	13	37109560	37109560	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016179	exon11	c.C2414T	p.P805L	.	.	.
PPP1R13B	23368	broad.mit.edu	36	14	103314888	103314888	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015316	exon4	c.C301T	p.R101X	.	.	.
ARHGAP5	394	broad.mit.edu	36	14	31632108	31632108	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001030055	exon2	c.C2482T	p.R828X	.	.	.
DACT1	51339	broad.mit.edu	36	14	58182909	58182909	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001079520	exon4	c.G1704A	p.T568T	.	.	.
DICER1	23405	broad.mit.edu	36	14	94665644	94665644	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001195573	exon5	c.G652T	p.E218X	.	.	.
BEGAIN	57596	broad.mit.edu	36	14	100075081	100075084	+	Frame_Shift_Del	DEL	CGTC	-	-	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	CGTC	CGTC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001159531	exon6	c.757_760del	p.253_254del	.	.	.
C15orf58	390637	broad.mit.edu	36	15	88585310	88585310	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001013657	exon4	c.C166A	p.Q56K	.	.	.
GRIN2A	2903	broad.mit.edu	36	16	10181622	10181622	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001134408	exon2	c.G148A	p.E50K	.	.	.
CREBBP	1387	broad.mit.edu	36	16	3721798	3721798	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004380	exon29	c.A4870C	p.T1624P	.	.	.
CYLD	1540	broad.mit.edu	36	16	49341235	49341235	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015247	exon4	c.C125T	p.P42L	.	.	.
RILP	83547	broad.mit.edu	36	17	1496560	1496560	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031430	exon8	c.C1132T	p.P378S	.	.	.
KIAA0664	23277	broad.mit.edu	36	17	2542129	2542129	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015229	exon23	c.C3456T	p.V1152V	.	.	.
ANKFN1	162282	broad.mit.edu	36	17	51783170	51783170	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_153228	exon4	c.T242A	p.L81H	.	.	.
SMAD4	4089	broad.mit.edu	36	18	46827520	46827549	+	In_Frame_Del	DEL	GCAAAAAGAGCAATTGAAAGTTTGGTAAAG	-	-	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	GCAAAAAGAGCAATTGAAAGTTTGGTAAAG	GCAAAAAGAGCAATTGAAAGTTTGGTAAAG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005359	exon2	c.106_135del	p.36_45del	.	.	.
MAG	4099	broad.mit.edu	36	19	40494732	40494732	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001199216	exon10	c.G1613A	p.R538H	.	.	.
FFAR1	2864	broad.mit.edu	36	19	40534822	40534822	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005303	exon1	c.G528A	p.P176P	.	.	.
CCDC9	26093	broad.mit.edu	36	19	52459713	52459713	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015603	exon6	c.G476A	p.R159Q	.	.	.
FLT3LG	2323	broad.mit.edu	36	19	54670850	54670850	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001459	exon3	c.G124A	p.A42T	.	.	.
SAFB	6294	broad.mit.edu	36	19	5619250	5619250	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002967	exon21	c.G2696T	p.G899V	.	.	.
CTTNBP2NL	55917	broad.mit.edu	36	1	112760373	112760373	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018704	exon3	c.G63A	p.E21E	.	.	.
NRAS	4893	broad.mit.edu	36	1	115060270	115060270	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002524	exon2	c.G35A	p.G12D	 NRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.
HRNR	388697	broad.mit.edu	36	1	150454208	150454208	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001009931	exon3	c.G6521A	p.R2174Q	.	.	.
SPRR3	6707	broad.mit.edu	36	1	151242373	151242373	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001097589	exon2	c.G253A	p.V85I	.	.	.
BCAN	63827	broad.mit.edu	36	1	154888047	154888047	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021948	exon7	c.C1239T	p.D413D	.	.	.
XPR1	9213	broad.mit.edu	36	1	178868020	178868020	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001135669	exon1	c.C60A	p.I20I	.	.	.
FMN2	56776	broad.mit.edu	36	1	238437294	238437294	+	Nonsense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020066	exon5	c.T2559A	p.C853X	.	.	.
OPRD1	4985	broad.mit.edu	36	1	29058207	29058207	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000911	exon2	c.G382A	p.D128N	.	.	.
SNPH	9751	broad.mit.edu	36	20	1233648	1233648	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014723	exon6	c.C435T	p.L145L	.	.	.
ZNF335	63925	broad.mit.edu	36	20	44021478	44021478	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022095	exon15	c.G2022A	p.G674G	.	.	.
PTGIS	5740	broad.mit.edu	36	20	47563117	47563117	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000961	exon8	c.C1113T	p.D371D	.	.	.
MLC1	23209	broad.mit.edu	36	22	48857959	48857959	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015166	exon6	c.A523G	p.K175E	.	.	.
ANKMY1	51281	broad.mit.edu	36	2	241112239	241112240	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017844	exon6	c.878_879insG	p.D293fs	.	.	.
NPHP1	4867	broad.mit.edu	36	2	110279563	110279563	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001128178	exon8	c.G762A	p.A254A	.	.	.
PXDN	7837	broad.mit.edu	36	2	1632126	1632126	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012293	exon17	c.C2433T	p.D811D	.	.	.
LRP2	4036	broad.mit.edu	36	2	169812157	169812157	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004525	exon20	c.C2885A	p.S962X	.	.	.
BZW1	9689	broad.mit.edu	36	2	201393064	201393064	+	Nonsense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014670	exon10	c.A883T	p.K295X	.	.	.
COL6A3	1293	broad.mit.edu	36	2	237935201	237935201	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_057166	exon12	c.G4255A	p.E1419K	.	.	.
COL6A3	1293	broad.mit.edu	36	2	237948017	237948017	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_057166	exon5	c.C1635T	p.S545S	.	.	.
EHD3	30845	broad.mit.edu	36	2	31311121	31311121	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014600	exon1	c.G130A	p.E44K	.	.	.
DYSF	8291	broad.mit.edu	36	2	71681362	71681362	+	Missense_Mutation	SNP	G	A	A	rs2303603	byCluster;byFrequency;byHapMap	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001130982	exon35	c.G3821A	p.R1274H	.	.	.
REV1	51455	broad.mit.edu	36	2	99385994	99385994	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016316	exon20	c.G3174A	p.K1058K	.	.	.
GNB4	59345	broad.mit.edu	36	3	180626681	180626682	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_021629	exon2	c.2_3insA	p.M1fs	.	.	.
NMD3	51068	broad.mit.edu	36	3	162446914	162446914	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015938	exon12	c.G1114A	p.G372R	.	.	.
TNIK	23043	broad.mit.edu	36	3	172395054	172395054	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001161565	exon5	c.C371A	p.T124K	.	.	.
HRG	3273	broad.mit.edu	36	3	187877938	187877938	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000412	exon7	c.C1150T	p.H384Y	.	.	.
EIF4A2	1974	broad.mit.edu	36	3	187989684	187989684	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001967	exon11	c.C1156G	p.R386G	.	.	.
FGF12	2257	broad.mit.edu	36	3	193608575	193608575	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021032	exon1	c.C132T	p.H44H	.	.	.
TRANK1	9881	broad.mit.edu	36	3	36871714	36871714	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014831	exon12	c.G4371A	p.K1457K	.	.	.
CAMP	820	broad.mit.edu	36	3	48240952	48240952	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004345	exon2	c.C306T	p.D102D	.	.	.
SLC25A20	788	broad.mit.edu	36	3	48875025	48875025	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000387	exon5	c.T489C	p.F163F	.	.	.
CAV3	859	broad.mit.edu	36	3	8762233	8762233	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001234	exon2	c.G136A	p.A46T	.	.	.
ADH5	128	broad.mit.edu	36	4	100216921	100216921	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000671	exon5	c.G521A	p.C174Y	.	.	.
APC	324	broad.mit.edu	36	5	112179103	112179103	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon7	c.C793T	p.R265X	 APC,large_intestine,NS,Substitution - Nonsense,0 	.	.
APC	324	broad.mit.edu	36	5	112203322	112203322	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.C4078T	p.Q1360X	 APC,large_intestine,NS,Substitution - Nonsense,0 	.	.
DMXL1	1657	broad.mit.edu	36	5	118534648	118534648	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005509	exon24	c.G6263T	p.G2088V	.	.	.
PCDHAC1	56135	broad.mit.edu	36	5	140286816	140286816	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_031882	exon1	c.C155T	p.S52L	.	.	.
PREP	5550	broad.mit.edu	36	6	105832860	105832860	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002726	exon15	c.G1985A	p.R662H	.	.	.
KPNA5	3841	broad.mit.edu	36	6	117120200	117120200	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002269	exon4	c.G292C	p.D98H	.	.	.
RAET1E	135250	broad.mit.edu	36	6	150252396	150252396	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_139165	exon3	c.G403A	p.G135S	.	.	.
ME1	4199	broad.mit.edu	36	6	84174218	84174218	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002395	exon2	c.C200T	p.S67F	.	.	.
PNRC1	10957	broad.mit.edu	36	6	89847538	89847538	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006813	exon1	c.C206T	p.T69I	.	.	.
FAM71F1	84691	broad.mit.edu	36	7	128144130	128144130	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032599	exon2	c.G277A	p.V93I	.	.	.
FERD3L	222894	broad.mit.edu	36	7	19151506	19151506	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152898	exon1	c.C5T	p.A2V	.	.	.
FAM188B	84182	broad.mit.edu	36	7	30791976	30791976	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032222	exon4	c.C506T	p.P169L	.	.	.
PILRB	29990	broad.mit.edu	36	7	99794500	99794500	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_178238	exon2	c.G316A	p.E106K	.	.	.
CSMD3	114788	broad.mit.edu	36	8	114057415	114057415	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198123	exon7	c.T1169A	p.L390H	.	.	.
TNFRSF11B	4982	broad.mit.edu	36	8	120014465	120014465	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002546	exon2	c.G286T	p.E96X	.	.	.
ADAM7	8756	broad.mit.edu	36	8	24389876	24389876	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003817	exon8	c.G674A	p.R225Q	.	.	.
RBM12B	389677	broad.mit.edu	36	8	94816109	94816109	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_203390	exon3	c.C1706G	p.P569R	.	.	.
NR4A3	8013	broad.mit.edu	36	9	101630588	101630589	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173199	exon3	c.443_444insC	p.F148fs	.	.	.
PRSS3	5646	broad.mit.edu	36	9	33740695	33740696	+	De_novo_Start_InFrame	INS	-	A	A	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007343	exon1	c.181_182insA	p.D61fs	.	.	.
SARDH	1757	broad.mit.edu	36	9	135518953	135518953	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_007101	exon21	c.C2636T	p.S879L	.	.	.
FAM108B1	51104	broad.mit.edu	36	9	73679425	73679425	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001025780	exon2	c.G392A	p.G131D	.	.	.
FAM22F	54754	broad.mit.edu	36	9	96122614	96122614	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017561	exon5	c.G1065C	p.K355N	.	.	.
C9orf156	51531	broad.mit.edu	36	9	99706897	99706897	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016481	exon5	c.C1265T	p.P422L	.	.	.
ATP7A	538	broad.mit.edu	36	X	77156881	77156881	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000052	exon11	c.C2473T	p.L825F	.	.	.