Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
CPN1	1369	broad.mit.edu	36	10	101825740	101825740	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001308	exon2	c.G338A	p.R113H	.	.	.
GRK5	2869	broad.mit.edu	36	10	121202732	121202732	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005308	exon15	c.C1628T	p.P543L	.	.	.
APBB1IP	54518	broad.mit.edu	36	10	26832209	26832209	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_019043	exon6	c.G531T	p.K177N	.	.	.
RASGEF1A	221002	broad.mit.edu	36	10	43013566	43013566	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145313	exon10	c.C1116T	p.S372S	.	.	.
CDH23	64072	broad.mit.edu	36	10	73138933	73138933	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_022124	exon26	c.G3179T	p.R1060L	.	.	.
DNAJB13	374407	broad.mit.edu	36	11	73357117	73357118	+	Frame_Shift_Ins	INS	-	CC	CC	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153614	exon6	c.686_687insCC	p.N229fs	.	.	.
ZBTB16	7704	broad.mit.edu	36	11	113440313	113440313	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006006	exon2	c.G1081T	p.A361S	.	.	.
MRGPRX3	117195	broad.mit.edu	36	11	18115668	18115668	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_054031	exon3	c.G343A	p.A115T	.	.	.
QSER1	79832	broad.mit.edu	36	11	32912803	32912803	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001076786	exon4	c.A3036G	p.R1012R	.	.	.
NAT10	55226	broad.mit.edu	36	11	34114768	34114768	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001144030	exon18	c.G1816T	p.V606F	.	.	.
PHRF1	57661	broad.mit.edu	36	11	582602	582602	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020901	exon6	c.C548T	p.P183L	.	.	.
PGA5	5222	broad.mit.edu	36	11	60773730	60773730	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014224	exon7	c.G787A	p.G263R	.	.	.
AHNAK	79026	broad.mit.edu	36	11	62015804	62015804	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024060	exon5	c.G418T	p.V140F	.	.	.
CEP164	22897	broad.mit.edu	36	11	116787734	116787735	+	Frame_Shift_Del	DEL	CT	-	-	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	CT	CT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014956	exon32	c.4177_4178del	p.1393_1393del	.	.	.
OSBP	5007	broad.mit.edu	36	11	59139360	59139362	+	In_Frame_Del	DEL	GCT	-	-	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	GCT	GCT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002556	exon1	c.352_354del	p.118_118del	.	.	.
MYO1H	283446	broad.mit.edu	36	12	108343177	108343178	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001101421	exon15	c.1558_1559insA	p.E520fs	.	.	.
ASCL4	121549	broad.mit.edu	36	12	106693133	106693133	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_203436	exon1	c.C11T	p.T4M	.	.	.
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35A	p.G12D	 KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.
CACNA1C	775	broad.mit.edu	36	12	2656549	2656549	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001129842	exon40	c.C4857T	p.Y1619Y	.	.	.
ACVR1B	91	broad.mit.edu	36	12	50656522	50656522	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020327	exon3	c.G320A	p.R107H	.	.	.
KRT6B	3854	broad.mit.edu	36	12	51127442	51127442	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005555	exon9	c.C1494T	p.G498G	.	.	.
ESPL1	9700	broad.mit.edu	36	12	51961649	51961649	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012291	exon13	c.G2591A	p.R864Q	.	.	.
CDK2	1017	broad.mit.edu	36	12	54648877	54648877	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052827	exon4	c.C364G	p.R122G	.	.	.
SHMT2	6472	broad.mit.edu	36	12	55912610	55912610	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001166359	exon6	c.C639T	p.Y213Y	.	.	.
GLI1	2735	broad.mit.edu	36	12	56149741	56149741	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001160045	exon9	c.C1185A	p.S395S	.	.	.
CDK17	5128	broad.mit.edu	36	12	95216807	95216807	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002595	exon7	c.A686G	p.E229G	.	.	.
ANO4	121601	broad.mit.edu	36	12	99997156	99997156	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_178826	exon14	c.G1262A	p.W421X	.	.	.
KDELC1	79070	broad.mit.edu	36	13	102244059	102244059	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024089	exon3	c.G487A	p.D163N	.	.	.
NBEA	26960	broad.mit.edu	36	13	35137252	35137252	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015678	exon55	c.C8330A	p.T2777K	.	.	.
TRPC4	7223	broad.mit.edu	36	13	37218286	37218286	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001135957	exon3	c.G685T	p.E229X	.	.	.
MDGA2	161357	broad.mit.edu	36	14	46635998	46635998	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_182830	exon6	c.C110A	p.T37K	.	.	.
C14orf50	145376	broad.mit.edu	36	14	64124603	64124603	+	Nonsense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_172365	exon11	c.A919T	p.K307X	.	.	.
C14orf49	161176	broad.mit.edu	36	14	94991515	94991515	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152592	exon5	c.G1089A	p.A363A	.	.	.
APBA2	321	broad.mit.edu	36	15	27133789	27133789	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005503	exon3	c.C410T	p.A137V	.	.	.
GPR176	11245	broad.mit.edu	36	15	37881025	37881025	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007223	exon3	c.C1148T	p.P383L	.	.	.
ZNF609	23060	broad.mit.edu	36	15	62579252	62579252	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015042	exon1	c.G581A	p.R194Q	.	.	.
CLN6	54982	broad.mit.edu	36	15	66293776	66293776	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017882	exon3	c.T203C	p.V68A	.	.	.
FAM154B	283726	broad.mit.edu	36	15	80361819	80361819	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001008226	exon3	c.T558C	p.C186C	.	.	.
RCCD1	91433	broad.mit.edu	36	15	89305999	89305999	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033544	exon9	c.G1127A	p.S376N	.	.	.
CPPED1	55313	broad.mit.edu	36	16	12782619	12782619	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001099455	exon2	c.C213T	p.A71A	.	.	.
SALL1	6299	broad.mit.edu	36	16	49730826	49730826	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002968	exon2	c.G2808T	p.Q936H	.	.	.
NAE1	8883	broad.mit.edu	36	16	65418153	65418153	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001018159	exon3	c.G67T	p.E23X	.	.	.
SREBF1	6720	broad.mit.edu	36	17	17659330	17659330	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005291	exon14	c.C2512T	p.H838Y	.	.	.
FAM18B1	51030	broad.mit.edu	36	17	18641648	18641648	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016078	exon4	c.G272A	p.R91H	.	.	.
SPACA3	124912	broad.mit.edu	36	17	28346681	28346681	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173847	exon2	c.C176A	p.A59D	.	.	.
ERBB2	2064	broad.mit.edu	36	17	35134526	35134526	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001005862	exon23	c.G2239T	p.V747L	 ERBB2,central_nervous_system,brain,Substitution - Missense,-1 	.	.
ERBB2	2064	broad.mit.edu	36	17	35134858	35134858	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001005862	exon24	c.G2434A	p.V812I	 ERBB2,stomach,NS,Substitution - Missense,0 	.	.
HEATR6	63897	broad.mit.edu	36	17	55476172	55476172	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022070	exon20	c.C3080T	p.P1027L	.	.	.
SCN4A	6329	broad.mit.edu	36	17	59388371	59388371	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000334	exon13	c.C2259T	p.I753I	.	.	.
WIPI1	55062	broad.mit.edu	36	17	63937878	63937878	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017983	exon9	c.G819A	p.S273S	.	.	.
MYH10	4628	broad.mit.edu	36	17	8365270	8365270	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005964	exon16	c.C1923T	p.S641S	.	.	.
KDM6B	23135	broad.mit.edu	36	17	7690903	7690911	+	In_Frame_Del	DEL	ACCACCACC	-	-	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	ACCACCACC	ACCACCACC	ACCACCACC	-	ACCACCACC	-	Unknown	Valid	Germline	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001080424	exon9	c.753_761del	p.251_254del	.	.	.
SS18	6760	broad.mit.edu	36	18	21886743	21886743	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005637	exon5	c.G450T	p.M150I	.	.	.
DCC	1630	broad.mit.edu	36	18	49177744	49177744	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005215	exon18	c.G2757A	p.S919S	.	.	.
EPB41L3	23136	broad.mit.edu	36	18	5396823	5396823	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012307	exon16	c.G2302T	p.A768S	.	.	.
FAM129C	199786	broad.mit.edu	36	19	17504088	17504088	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173544	exon4	c.G296A	p.R99H	.	.	.
ATP4A	495	broad.mit.edu	36	19	40733828	40733828	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000704	exon20	c.G2911A	p.V971M	.	.	.
RYR1	6261	broad.mit.edu	36	19	43668349	43668349	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001042723	exon34	c.G5214A	p.T1738T	.	.	.
PPP5C	5536	broad.mit.edu	36	19	51570793	51570793	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006247	exon3	c.C456T	p.I152I	.	.	.
HRC	3270	broad.mit.edu	36	19	54349910	54349910	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002152	exon1	c.G397A	p.G133R	.	.	.
SIGLEC8	27181	broad.mit.edu	36	19	56647499	56647499	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014442	exon7	c.G1446T	p.E482D	.	.	.
LILRB3	11025	broad.mit.edu	36	19	59437477	59437477	+	Missense_Mutation	SNP	C	T	T	rs1052966	byCluster;byFrequency	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024318	exon4	c.G445A	p.G149R	.	.	.
NLRP9	338321	broad.mit.edu	36	19	60935568	60935568	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_176820	exon2	c.G1441T	p.V481L	.	.	.
MUC16	94025	broad.mit.edu	36	19	8907602	8907602	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024690	exon5	c.C35029A	p.R11677R	.	.	.
C3P1	388503	broad.mit.edu	36	19	10027291	10027291	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
NPR1	4881	broad.mit.edu	36	1	151928107	151928107	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000906	exon16	c.G2472A	p.A824A	.	.	.
ZNF648	127665	broad.mit.edu	36	1	180292386	180292386	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001009992	exon2	c.G1383A	p.S461S	.	.	.
CFH	3075	broad.mit.edu	36	1	194960884	194960884	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000186	exon12	c.C1707T	p.C569C	.	.	.
HLX	3142	broad.mit.edu	36	1	219122168	219122168	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021958	exon3	c.C812T	p.T271M	.	.	.
TP53BP2	7159	broad.mit.edu	36	1	222068676	222068676	+	De_novo_Start_OutOfFrame	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001031685	exon3	c.C178T	p.R60C	.	.	.
TMEM63A	9725	broad.mit.edu	36	1	224120937	224120937	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014698	exon9	c.G635A	p.R212Q	.	.	.
ZNF436	80818	broad.mit.edu	36	1	23561896	23561896	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_030634	exon3	c.C566G	p.T189S	.	.	.
PLCH2	9651	broad.mit.edu	36	1	2412596	2412596	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014638	exon11	c.G1621A	p.V541I	.	.	.
CCDC28B	79140	broad.mit.edu	36	1	32442113	32442113	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024296	exon3	c.G211A	p.G71S	.	.	.
CSMD2	114784	broad.mit.edu	36	1	33931190	33931190	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_052896	exon25	c.G3859A	p.G1287R	.	.	.
UQCRH	7388	broad.mit.edu	36	1	46548535	46548535	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006004	exon3	c.C203T	p.T68M	.	.	.
ELAVL4	1996	broad.mit.edu	36	1	50439218	50439218	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001144774	exon7	c.C882T	p.S294S	.	.	.
C20orf186	149954	broad.mit.edu	36	20	31140468	31140468	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_182519	exon6	c.G962A	p.R321Q	.	.	.
C20orf114	92747	broad.mit.edu	36	20	31353844	31353844	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033197	exon10	c.C946T	p.R316W	.	.	.
C20orf132	140699	broad.mit.edu	36	20	35174203	35174203	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152503	exon20	c.G2753T	p.S918I	.	.	.
BPI	671	broad.mit.edu	36	20	36398976	36398976	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001725	exon15	c.C1440T	p.F480F	.	.	.
KCNB1	3745	broad.mit.edu	36	20	47531921	47531921	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004975	exon1	c.C504T	p.C168C	.	.	.
APCDD1L	164284	broad.mit.edu	36	20	56469722	56469722	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153360	exon4	c.C1036T	p.R346C	.	.	.
ADNP	23394	broad.mit.edu	36	20	48941562	48941562	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015339	exon5	c.3096delC	p.S1032fs	.	.	.
NCAM2	4685	broad.mit.edu	36	21	21726432	21726432	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004540	exon12	c.G1614A	p.A538A	.	.	.
BACE2	25825	broad.mit.edu	36	21	41531347	41531347	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138991	exon3	c.G439A	p.V147M	.	.	.
ZNF295	49854	broad.mit.edu	36	21	42284994	42284994	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001098403	exon4	c.C1677T	p.P559P	.	.	.
TMPRSS3	64699	broad.mit.edu	36	21	42668935	42668935	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024022	exon12	c.C1306G	p.R436G	.	.	.
AIRE	326	broad.mit.edu	36	21	44531029	44531029	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000383	exon2	c.C294A	p.D98E	.	.	.
LZTR1	8216	broad.mit.edu	36	22	19674765	19674765	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006767	exon8	c.G742A	p.G248R	.	.	.
MN1	4330	broad.mit.edu	36	22	26522812	26522812	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002430	exon1	c.C3720T	p.D1240D	.	.	.
CDC42EP1	11135	broad.mit.edu	36	22	36294355	36294375	+	In_Frame_Del	DEL	CAGCGCCTGCTGCAAACCCCT	-	-	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	CAGCGCCTGCTGCAAACCCCT	CAGCGCCTGCTGCAAACCCCT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152243	exon3	c.758_778del	p.253_260del	.	.	.
TGOLN2	10618	broad.mit.edu	36	2	85403383	85403384	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
EPB41L5	57669	broad.mit.edu	36	2	120493173	120493173	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001184937	exon2	c.C43T	p.R15C	.	.	.
LRP1B	53353	broad.mit.edu	36	2	140916642	140916642	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018557	exon66	c.G10315T	p.D3439Y	.	.	.
ACVR1C	130399	broad.mit.edu	36	2	158103406	158103406	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001111031	exon8	c.G1131A	p.S377S	.	.	.
SCN2A	6326	broad.mit.edu	36	2	165860662	165860662	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001040143	exon1	c.G83A	p.R28H	.	.	.
LRP2	4036	broad.mit.edu	36	2	169776812	169776812	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004525	exon37	c.C6192T	p.F2064F	.	.	.
TTN	7273	broad.mit.edu	36	2	179138188	179138188	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003319	exon154	c.C53721T	p.S17907S	.	.	.
TTN	7273	broad.mit.edu	36	2	179290149	179290149	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_133378	exon85	c.C21825A	p.G7275G	.	.	.
MYT1L	23040	broad.mit.edu	36	2	1905223	1905223	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015025	exon10	c.C1325T	p.T442M	.	.	.
SPEG	10290	broad.mit.edu	36	2	220045988	220045988	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005876	exon16	c.G4073A	p.R1358Q	.	.	.
NRXN1	9378	broad.mit.edu	36	2	50618929	50618929	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001135659	exon11	c.C2229T	p.S743S	.	.	.
VAMP8	8673	broad.mit.edu	36	2	85659707	85659707	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003761	exon2	c.T68A	p.V23D	.	.	.
CCDC80	151887	broad.mit.edu	36	3	113840292	113840292	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_199511	exon2	c.C1151T	p.T384M	.	.	.
FSTL1	11167	broad.mit.edu	36	3	121604799	121604799	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007085	exon8	c.C674A	p.S225Y	.	.	.
MYLK	4638	broad.mit.edu	36	3	124894289	124894289	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_053025	exon19	c.G3548T	p.C1183F	.	.	.
KALRN	8997	broad.mit.edu	36	3	125838771	125838771	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001024660	exon37	c.G5592C	p.Q1864H	.	.	.
KALRN	8997	broad.mit.edu	36	3	125901477	125901477	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001024660	exon56	c.G7903A	p.G2635R	.	.	.
ZXDC	79364	broad.mit.edu	36	3	127643392	127643392	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025112	exon8	c.G2300A	p.G767E	.	.	.
IQCJ	654502	broad.mit.edu	36	3	160465867	160465867	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001042705	exon5	c.G461A	p.G154D	.	.	.
SMC4	10051	broad.mit.edu	36	3	161612531	161612531	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001002800	exon6	c.A817G	p.R273G	.	.	.
OTOL1	131149	broad.mit.edu	36	3	162697582	162697582	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080440	exon1	c.T293A	p.F98Y	.	.	.
KLHL6	89857	broad.mit.edu	36	3	184692558	184692558	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_130446	exon7	c.A1717C	p.I573L	.	.	.
MASP1	5648	broad.mit.edu	36	3	188436483	188436483	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_139125	exon11	c.G1870A	p.V624M	.	.	.
RTP2	344892	broad.mit.edu	36	3	188899082	188899082	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004312	exon2	c.C576T	p.S192S	.	.	.
SCN5A	6331	broad.mit.edu	36	3	38591874	38591874	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001099405	exon20	c.G3584A	p.R1195H	.	.	.
SCN5A	6331	broad.mit.edu	36	3	38593167	38593167	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001099405	exon19	c.G3500T	p.C1167F	.	.	.
NBEAL2	23218	broad.mit.edu	36	3	47005362	47005362	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015175	exon3	c.C167T	p.P56L	.	.	.
ITPR1	3708	broad.mit.edu	36	3	4719563	4719563	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001099952	exon36	c.A4559G	p.Y1520C	.	.	.
CADPS	8618	broad.mit.edu	36	3	62439088	62439088	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_183393	exon20	c.G2980A	p.A994T	.	.	.
ROBO1	6091	broad.mit.edu	36	3	78749780	78749780	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002941	exon27	c.C3977T	p.A1326V	.	.	.
CAV3	859	broad.mit.edu	36	3	8762331	8762331	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001234	exon2	c.G234A	p.T78T	.	.	.
CENPE	1062	broad.mit.edu	36	4	104249534	104249534	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001813	exon48	c.G7886A	p.R2629Q	.	.	.
LEF1	51176	broad.mit.edu	36	4	109218919	109218919	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001166119	exon7	c.C626T	p.A209V	.	.	.
QRFPR	84109	broad.mit.edu	36	4	122521190	122521190	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198179	exon1	c.G63A	p.T21T	.	.	.
TLL1	7092	broad.mit.edu	36	4	167135066	167135066	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012464	exon4	c.G445A	p.A149T	.	.	.
HTT	3064	broad.mit.edu	36	4	3146313	3146313	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002111	exon32	c.C4234T	p.R1412C	.	.	.
SLAIN2	57606	broad.mit.edu	36	4	48066668	48066668	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020846	exon2	c.G435A	p.S145S	.	.	.
LNX1	84708	broad.mit.edu	36	4	54118882	54118882	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032622	exon1	c.C8T	p.A3V	.	.	.
PPP2R2C	5522	broad.mit.edu	36	4	6376091	6376091	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020416	exon9	c.G1183A	p.V395M	.	.	.
THAP9	79725	broad.mit.edu	36	4	84058168	84058168	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024672	exon5	c.C1779T	p.F593F	.	.	.
PPM1K	152926	broad.mit.edu	36	4	89418493	89418493	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152542	exon2	c.A267G	p.K89K	.	.	.
UNC5C	8633	broad.mit.edu	36	4	96382621	96382621	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003728	exon7	c.G1090T	p.D364Y	.	.	.
C4orf37	285555	broad.mit.edu	36	4	99121399	99121399	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_174952	exon6	c.A706G	p.K236E	.	.	.
APC	324	broad.mit.edu	36	5	112201603	112201603	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.C2359T	p.R787X	 APC,large_intestine,right,Substitution - Nonsense,0 	.	.
AQPEP	206338	broad.mit.edu	36	5	115364087	115364087	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_173800	exon8	c.C1574A	p.A525E	.	.	.
FTMT	94033	broad.mit.edu	36	5	121215615	121215615	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_177478	exon1	c.C58T	p.R20C	.	.	.
BRD8	10902	broad.mit.edu	36	5	137532895	137532895	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006696	exon8	c.G557A	p.R186H	.	.	.
EGR1	1958	broad.mit.edu	36	5	137831265	137831265	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001964	exon2	c.G1228T	p.E410X	.	.	.
PCDHA2	56146	broad.mit.edu	36	5	140156808	140156808	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018905	exon1	c.C2075T	p.T692M	.	.	.
PCDHAC1	56135	broad.mit.edu	36	5	140287943	140287943	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_031882	exon1	c.C1282T	p.R428X	.	.	.
PCDHGB2	56103	broad.mit.edu	36	5	140721433	140721433	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018923	exon1	c.C1547T	p.A516V	.	.	.
PCDHGB3	56102	broad.mit.edu	36	5	140732034	140732034	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018924	exon1	c.G1889A	p.R630H	.	.	.
PCDHGA10	56106	broad.mit.edu	36	5	140775219	140775219	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032090	exon1	c.G2293A	p.A765T	.	.	.
CAMK2A	815	broad.mit.edu	36	5	149632904	149632904	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015981	exon2	c.C74T	p.S25L	.	.	.
EBF1	1879	broad.mit.edu	36	5	158455236	158455236	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024007	exon4	c.C381T	p.Y127Y	.	.	.
CDHR2	54825	broad.mit.edu	36	5	175925290	175925290	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001171976	exon3	c.G64A	p.V22M	.	.	.
IL6ST	3572	broad.mit.edu	36	5	55279136	55279136	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001190981	exon14	c.T1696G	p.L566V	.	.	.
ANKRD55	79722	broad.mit.edu	36	5	55458641	55458641	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024669	exon8	c.C662T	p.P221L	.	.	.
APC	324	broad.mit.edu	36	5	112203651	112203651	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.4407delT	p.T1469fs	 APC,large_intestine,NS,Complex - frameshift,+1 	.	.
GPRIN1	114787	broad.mit.edu	36	5	175958728	175958740	+	Frame_Shift_Del	DEL	CAAAGACCCAGGA	-	-	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	CAAAGACCCAGGA	CAAAGACCCAGGA	CAAAGACCCAGGA	CAAAGACCCAGGA	CAAAGACCCAGGA	CAAAGACCCAGGA	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_052899	exon2	c.702_714del	p.234_238del	.	.	.
HLA-B	3106	broad.mit.edu	36	6	31432580	31432581	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005514	exon2	c.207_208insC	p.E69fs	.	.	.
FYN	2534	broad.mit.edu	36	6	112147920	112147920	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002037	exon4	c.G28T	p.E10X	.	.	.
HEY2	23493	broad.mit.edu	36	6	126122045	126122045	+	Missense_Mutation	SNP	G	A	A	rs3734638	byCluster;byFrequency;byHapMap	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012259	exon5	c.G418A	p.V140M	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152730059	152730059	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033071	exon62	c.C9980T	p.T3327M	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152818737	152818737	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033071	exon23	c.G2725T	p.A909S	.	.	.
DUSP22	56940	broad.mit.edu	36	6	293181	293181	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020185	exon6	c.C342T	p.A114A	.	.	.
SKIV2L	6499	broad.mit.edu	36	6	32040000	32040000	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006929	exon17	c.T1873A	p.S625T	.	.	.
PPARD	5467	broad.mit.edu	36	6	35497592	35497592	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001171818	exon6	c.G303A	p.T101T	.	.	.
MDGA1	266727	broad.mit.edu	36	6	37727802	37727802	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153487	exon7	c.C1275T	p.P425P	.	.	.
HUS1B	135458	broad.mit.edu	36	6	601638	601638	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_148959	exon1	c.C307T	p.Q103X	.	.	.
EYS	346007	broad.mit.edu	36	6	66261886	66261886	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198283	exon3	c.G139T	p.E47X	.	.	.
COL19A1	1310	broad.mit.edu	36	6	70922781	70922781	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001858	exon32	c.A2121G	p.K707K	.	.	.
FAM135A	57579	broad.mit.edu	36	6	71243653	71243653	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001162529	exon6	c.G439A	p.G147S	.	.	.
SLC17A5	26503	broad.mit.edu	36	6	74361578	74361578	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012434	exon11	c.C1431T	p.F477F	.	.	.
COL12A1	1303	broad.mit.edu	36	6	75958659	75958659	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004370	exon4	c.G323T	p.G108V	.	.	.
HLA-B	3106	broad.mit.edu	36	6	31432583	31432583	+	Frame_Shift_Del	DEL	T	-	-	rs66519358	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005514	exon2	c.204delA	p.R68fs	.	.	.
GPER	2852	broad.mit.edu	36	7	1098712	1098712	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001505	exon2	c.G822A	p.P274P	.	.	.
PRSS1	5644	broad.mit.edu	36	7	142139451	142139451	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002769	exon3	c.C453T	p.G151G	.	.	.
CNTNAP2	26047	broad.mit.edu	36	7	146102300	146102300	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014141	exon2	c.A102T	p.K34N	.	.	.
INHBA	3624	broad.mit.edu	36	7	41696006	41696006	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002192	exon3	c.T1048C	p.C350R	.	.	.
ACTB	60	broad.mit.edu	36	7	5533919	5533919	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001101	exon6	c.C1114T	p.R372C	.	.	.
OCM	654231	broad.mit.edu	36	7	5887062	5887062	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001097622	exon1	c.G16A	p.V6M	.	.	.
PCLO	27445	broad.mit.edu	36	7	82423954	82423954	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033026	exon5	c.A4251T	p.L1417L	.	.	.
COL1A2	1278	broad.mit.edu	36	7	93890253	93890253	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000089	exon40	c.C2452A	p.L818I	.	.	.
NPTX2	4885	broad.mit.edu	36	7	98092393	98092393	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002523	exon3	c.C867T	p.I289I	.	.	.
ZKSCAN5	23660	broad.mit.edu	36	7	98941857	98941857	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145102	exon2	c.C254T	p.T85M	.	.	.
ZKSCAN5	23660	broad.mit.edu	36	7	98966841	98966841	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145102	exon7	c.T1553C	p.M518T	.	.	.
TMEM74	157753	broad.mit.edu	36	8	109865816	109865816	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_153015	exon2	c.C688T	p.R230C	.	.	.
TRPS1	7227	broad.mit.edu	36	8	116496176	116496176	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014112	exon7	c.C3136A	p.Q1046K	.	.	.
FAM135B	51059	broad.mit.edu	36	8	139233249	139233249	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015912	exon13	c.G2651A	p.R884H	.	.	.
EPPK1	83481	broad.mit.edu	36	8	145012969	145012969	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031308	exon1	c.C6441T	p.T2147T	.	.	.
MYOM2	9172	broad.mit.edu	36	8	2041515	2041515	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003970	exon22	c.C2811T	p.D937D	.	.	.
PNMA2	10687	broad.mit.edu	36	8	26421339	26421339	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007257	exon3	c.G850A	p.A284T	.	.	.
CSMD1	64478	broad.mit.edu	36	8	3338606	3338606	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033225	exon11	c.C1395A	p.T465T	.	.	.
UNC5D	137970	broad.mit.edu	36	8	35526420	35526420	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_080872	exon2	c.G172T	p.E58X	.	.	.
C8orf40	114926	broad.mit.edu	36	8	42520862	42520862	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001135675	exon2	c.G90T	p.L30F	.	.	.
DCAF4L2	138009	broad.mit.edu	36	8	88954798	88954798	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152418	exon1	c.G518A	p.R173Q	.	.	.
ACTL7B	10880	broad.mit.edu	36	9	110656971	110656971	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006686	exon1	c.G1061A	p.R354H	.	.	.
VAV2	7410	broad.mit.edu	36	9	135623391	135623391	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001134398	exon29	c.C2583T	p.N861N	.	.	.
OLFM1	10439	broad.mit.edu	36	9	137151619	137151619	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014279	exon6	c.C1178T	p.T393M	.	.	.
FREM1	158326	broad.mit.edu	36	9	14791800	14791800	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_144966	exon21	c.G3544T	p.A1182S	.	.	.
FREM1	158326	broad.mit.edu	36	9	14796686	14796686	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_144966	exon19	c.G3247T	p.E1083X	.	.	.
TAF1L	138474	broad.mit.edu	36	9	32620914	32620914	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153809	exon1	c.T4664A	p.F1555Y	.	.	.
C9orf79	286234	broad.mit.edu	36	9	89691232	89691232	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178828	exon4	c.C2010T	p.D670D	.	.	.
LOC57653	57653	broad.mit.edu	36	9	99120661	99120661	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020893	exon10	c.G1187A	p.R396Q	.	.	.
LHFPL1	340596	broad.mit.edu	36	X	111801158	111801158	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178175	exon2	c.G117T	p.G39G	.	.	.
GLUD2	2747	broad.mit.edu	36	X	120009590	120009590	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012084	exon1	c.G371A	p.R124H	.	.	.
ASMTL	8623	broad.mit.edu	36	X	1521193	1521193	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004192	exon2	c.G111A	p.V37V	.	.	.
MAGEE1	57692	broad.mit.edu	36	X	75565865	75565865	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020932	exon1	c.G1138A	p.V380M	.	.	.