Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
DOCK1	1793	broad.mit.edu	36	10	129097372	129097372	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001380	exon41	c.G4141A	p.A1381T	.	.	.
TECTA	7007	broad.mit.edu	36	11	120501489	120501489	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005422	exon7	c.G1472A	p.R491H	.	.	.
OR4C11	219429	broad.mit.edu	36	11	55127534	55127534	+	Nonsense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001004700	exon1	c.A892T	p.K298X	.	.	.
OR10AG1	282770	broad.mit.edu	36	11	55492036	55492036	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005491	exon1	c.C480T	p.C160C	.	.	.
TNKS1BP1	85456	broad.mit.edu	36	11	56834431	56834431	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033396	exon6	c.A2330C	p.K777T	.	.	.
PIWIL4	143689	broad.mit.edu	36	11	93980424	93980424	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152431	exon14	c.G1810A	p.G604R	.	.	.
DDX23	9416	broad.mit.edu	36	12	47525795	47525795	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004818	exon2	c.C38A	p.A13E	.	.	.
C12orf50	160419	broad.mit.edu	36	12	86905816	86905816	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152589	exon9	c.G759A	p.T253T	.	.	.
ERCC5	2073	broad.mit.edu	36	13	102290028	102290028	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001159596	exon9	c.C658G	p.P220A	.	.	.
C13orf26	122046	broad.mit.edu	36	13	30424870	30424870	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152325	exon3	c.G220C	p.D74H	.	.	.
PCDH17	27253	broad.mit.edu	36	13	57197361	57197361	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001040429	exon4	c.G3412A	p.V1138I	.	.	.
RBM26	64062	broad.mit.edu	36	13	78792770	78792770	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_022118	exon21	c.C2930G	p.S977C	.	.	.
OR4M1	441670	broad.mit.edu	36	14	19318497	19318497	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001005500	exon1	c.T176C	p.M59T	.	.	.
KIAA1199	57214	broad.mit.edu	36	15	78963663	78963663	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018689	exon6	c.A710T	p.N237I	.	.	.
FAM86A	196483	broad.mit.edu	36	16	5080313	5080313	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_201400	exon6	c.G515C	p.G172A	.	.	.
CIRH1A	84916	broad.mit.edu	36	16	67756875	67756875	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032830	exon15	c.C1778T	p.P593L	.	.	.
VMO1	284013	broad.mit.edu	36	17	4635495	4635496	+	Frame_Shift_Ins	INS	-	GGGG	GGGG	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182566	exon3	c.511_512insCCCC	p.K171fs	.	.	.
RPA1	6117	broad.mit.edu	36	17	1733923	1733923	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002945	exon13	c.G1309T	p.G437W	.	.	.
UBE2G1	7326	broad.mit.edu	36	17	4146836	4146836	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003342	exon3	c.C172T	p.H58Y	.	.	.
PITPNC1	26207	broad.mit.edu	36	17	63119210	63119210	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012417	exon9	c.A743G	p.K248R	.	.	.
TP53	7157	broad.mit.edu	36	17	7519136	7519137	+	Frame_Shift_Del	DEL	CA	-	-	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	CA	CA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon5	c.518_519del	p.173_173del	 TP53,autonomic_ganglia,NS,Substitution - Missense,-2 	.	.
OR10H5	284433	broad.mit.edu	36	19	15766258	15766258	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004466	exon1	c.G400A	p.V134M	.	.	.
FFAR2	2867	broad.mit.edu	36	19	40633105	40633105	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005306	exon1	c.C649T	p.R217W	.	.	.
NKG7	4818	broad.mit.edu	36	19	56567034	56567034	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005601	exon3	c.G411T	p.W137C	.	.	.
ZNF528	84436	broad.mit.edu	36	19	57610427	57610427	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032423	exon7	c.T510C	p.A170A	.	.	.
ZNF415	55786	broad.mit.edu	36	19	58304775	58304775	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001136038	exon4	c.C335T	p.T112M	.	.	.
LELP1	149018	broad.mit.edu	36	1	151443931	151443931	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001010857	exon2	c.C124T	p.R42C	.	.	.
KCNN3	3782	broad.mit.edu	36	1	153108548	153108548	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002249	exon1	c.A517G	p.I173V	.	.	.
PPOX	5498	broad.mit.edu	36	1	159406104	159406104	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000309	exon8	c.G838C	p.D280H	.	.	.
HMCN1	83872	broad.mit.edu	36	1	184388535	184388536	+	Missense_Mutation	DNP	GG	AT	AT	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	GG	GG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031935	exon96	c.14927_14928AT	.	.	.	.
CFHR5	81494	broad.mit.edu	36	1	195229863	195229863	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_030787	exon4	c.C461T	p.A154V	.	.	.
USH2A	7399	broad.mit.edu	36	1	214324726	214324726	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_206933	exon25	c.G5104A	p.V1702M	.	.	.
ROR1	4919	broad.mit.edu	36	1	64416080	64416080	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005012	exon9	c.G1768A	p.G590R	.	.	.
CASS4	57091	broad.mit.edu	36	20	54466947	54466947	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020356	exon6	c.G2098A	p.A700T	.	.	.
APCDD1L	164284	broad.mit.edu	36	20	56469525	56469525	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153360	exon4	c.C1233T	p.Y411Y	.	.	.
CDH26	60437	broad.mit.edu	36	20	57993479	57993479	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_177980	exon7	c.G737C	p.R246T	.	.	.
ADAMTS5	11096	broad.mit.edu	36	21	27226279	27226279	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_007038	exon6	c.A1964G	p.K655R	.	.	.
MED15	51586	broad.mit.edu	36	22	19250813	19250814	+	In_Frame_Ins	INS	-	CAG	CAG	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001003891	exon7	c.750_751insCAG	p.Q250delinsQQ	.	.	.
MYO18B	84700	broad.mit.edu	36	22	24752700	24752700	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032608	exon43	c.G6760A	p.V2254M	.	.	.
CHST10	9486	broad.mit.edu	36	2	100376156	100376156	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004854	exon7	c.G1054A	p.D352N	.	.	.
PTPN18	26469	broad.mit.edu	36	2	130844136	130844136	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014369	exon8	c.C592T	p.R198C	.	.	.
UPP2	151531	broad.mit.edu	36	2	158686235	158686235	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001135098	exon7	c.C694G	p.Q232E	.	.	.
ABCA12	26154	broad.mit.edu	36	2	215622662	215622662	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_173076	exon6	c.A626G	p.K209R	.	.	.
MYLK	4638	broad.mit.edu	36	3	124940541	124940541	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_053025	exon7	c.C481T	p.P161S	.	.	.
RPSA	3921	broad.mit.edu	36	3	39428793	39428793	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002295	exon7	c.C818T	p.T273M	.	.	.
IL21	59067	broad.mit.edu	36	4	123761498	123761498	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021803	exon1	c.G119A	p.R40H	.	.	.
TLL1	7092	broad.mit.edu	36	4	167135015	167135015	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012464	exon4	c.G394T	p.V132L	.	.	.
JAKMIP1	152789	broad.mit.edu	36	4	6165374	6165374	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144720	exon2	c.C105T	p.I35I	.	.	.
FAM190A	401145	broad.mit.edu	36	4	91448499	91448499	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001145065	exon2	c.G41A	p.R14Q	.	.	.
MAN2A1	4124	broad.mit.edu	36	5	109145096	109145096	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002372	exon9	c.A1475T	p.D492V	.	.	.
CHSY3	337876	broad.mit.edu	36	5	129271910	129271910	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_175856	exon2	c.C1044T	p.C348C	.	.	.
PCDHA5	56143	broad.mit.edu	36	5	140182011	140182011	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018908	exon1	c.C467T	p.A156V	.	.	.
PCDHB9	56127	broad.mit.edu	36	5	140548995	140548995	+	Silent	SNP	G	C	C	rs71583634	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_019119	exon1	c.G1919C	p.W640S	.	.	.
GZMA	3001	broad.mit.edu	36	5	54441680	54441680	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006144	exon5	c.C702T	p.C234C	.	.	.
COL9A1	1297	broad.mit.edu	36	6	71047428	71047429	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	-	-	-	G	-	G	Unknown	Valid	Germline	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_078485	exon3	c.183_184insC	p.P61fs	.	.	.
LRFN2	57497	broad.mit.edu	36	6	40467891	40467891	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020737	exon3	c.G2139A	p.P713P	.	.	.
GSTA2	2939	broad.mit.edu	36	6	52723409	52723409	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000846	exon7	c.A594G	p.L198L	.	.	.
MDN1	23195	broad.mit.edu	36	6	90437460	90437460	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014611	exon83	c.G13855T	p.D4619Y	.	.	.
CALD1	800	broad.mit.edu	36	7	134203025	134203025	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033157	exon3	c.A1G	p.M1V	.	.	.
ZNF862	643641	broad.mit.edu	36	7	149176025	149176025	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001099220	exon4	c.C510T	p.I170I	.	.	.
CROT	54677	broad.mit.edu	36	7	86860200	86860200	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021151	exon17	c.C1599T	p.S533S	.	.	.
ABCB4	5244	broad.mit.edu	36	7	86894072	86894072	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018849	exon16	c.A1994G	p.H665R	.	.	.
CSMD3	114788	broad.mit.edu	36	8	113574003	113574003	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198123	exon31	c.C5169A	p.V1723V	.	.	.
TRPS1	7227	broad.mit.edu	36	8	116495939	116495939	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014112	exon7	c.C3373T	p.R1125W	.	.	.
KIAA1967	57805	broad.mit.edu	36	8	22519558	22519558	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_021174	exon3	c.C74T	p.S25F	.	.	.
EXTL3	2137	broad.mit.edu	36	8	28629864	28629864	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001440	exon3	c.C369T	p.N123N	.	.	.
CHD7	55636	broad.mit.edu	36	8	61913313	61913313	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017780	exon19	c.G4478A	p.R1493H	.	.	.
ADHFE1	137872	broad.mit.edu	36	8	67517593	67517593	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144650	exon3	c.G104A	p.G35E	.	.	.
CRISPLD1	83690	broad.mit.edu	36	8	76091482	76091482	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031461	exon7	c.C855T	p.S285S	.	.	.
RABGAP1	23637	broad.mit.edu	36	9	124786604	124786604	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012197	exon3	c.A170C	p.E57A	.	.	.
C9orf47	286223	broad.mit.edu	36	9	90796708	90796708	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001938	exon3	c.T594G	p.F198L	.	.	.
TLR8	51311	broad.mit.edu	36	X	12848140	12848140	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_138636	exon2	c.C1060T	p.P354S	.	.	.
PCDH19	57526	broad.mit.edu	36	X	99549405	99549405	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001105243	exon1	c.G847A	p.D283N	.	.	.