Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
WDR91	29062	hgsc.bcm.edu	36	7	134521525	134521525	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014149	exon15	c.C2162A	p.T721N	.	.	.
ARHGEF5	7984	hgsc.bcm.edu	36	7	143693155	143693155	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005435	exon2	c.G2460A	p.P820P	.	.	.
TXNDC3	51314	hgsc.bcm.edu	36	7	37903163	37903163	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_016616	exon17	c.G1711A	p.A571T	.	.	.
AMPH	273	hgsc.bcm.edu	36	7	38391025	38391025	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_139316	exon20	c.G1881T	p.K627N	.	.	.
FLRT2	23768	hgsc.bcm.edu	36	14	85158950	85158950	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_013231	exon2	c.G1339A	p.V447M	.	.	.
FCGBP	8857	hgsc.bcm.edu	36	19	45111512	45111512	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_003890	exon6	c.G3322A	p.A1108T	.	.	.
SPTBN4	57731	hgsc.bcm.edu	36	19	45773283	45773283	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020971	exon36	c.G7663A	p.G2555R	.	.	.
XKR6	286046	hgsc.bcm.edu	36	8	10819748	10819748	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_173683	exon2	c.A767C	p.Y256S	.	.	.
TG	7038	hgsc.bcm.edu	36	8	133952878	133952878	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003235	exon4	c.C378T	p.Y126Y	.	.	.
MTFR1	9650	hgsc.bcm.edu	36	8	66779637	66779637	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001145838	exon3	c.G337A	p.A113T	.	.	.
DEFB105B	504180	hgsc.bcm.edu	36	8	7332663	7332663	+	Missense_Mutation	SNP	T	T	A	rs62639778	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152250	exon1	c.T11A	p.I4N	.	.	.
NOTCH2	4853	hgsc.bcm.edu	36	1	120374108	120374108	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024408	exon2	c.A99G	p.E33E	.	.	.
RNF2	6045	hgsc.bcm.edu	36	1	183328935	183328935	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_007212	exon4	c.A368C	p.H123P	.	.	.
ASPM	259266	hgsc.bcm.edu	36	1	195368043	195368043	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018136	exon7	c.C2482G	p.L828V	.	.	.
C1orf96	126731	hgsc.bcm.edu	36	1	227527770	227527770	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145257	exon4	c.A648C	p.S216S	.	.	.
OR11L1	391189	hgsc.bcm.edu	36	1	246071711	246071711	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001001959	exon1	c.G111T	p.L37L	.	.	.
C11orf63	79864	hgsc.bcm.edu	36	11	122280237	122280237	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_024806	exon3	c.C739T	p.R247W	.	.	.
NAT10	55226	hgsc.bcm.edu	36	11	34119328	34119328	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001144030	exon23	c.G2493A	p.V831V	.	.	.
BTN3A3	10384	hgsc.bcm.edu	36	6	26559971	26559971	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006994	exon11	c.G1108T	p.D370Y	.	.	.
AKAP10	11216	hgsc.bcm.edu	36	17	19780224	19780224	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007202	exon9	c.T1434A	p.T478T	.	.	.
FBXO39	162517	hgsc.bcm.edu	36	17	6624171	6624171	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_153230	exon2	c.G260A	p.R87H	.	.	.
DNAH2	146754	hgsc.bcm.edu	36	17	7663409	7663409	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020877	exon71	c.G10973A	p.R3658H	.	.	.
SALL3	27164	hgsc.bcm.edu	36	18	74858272	74858272	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_171999	exon3	c.C3865T	p.R1289W	.	.	.
SATB1	6304	hgsc.bcm.edu	36	3	18411279	18411279	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002971	exon7	c.T885G	p.S295S	.	.	.
CLCN2	1181	hgsc.bcm.edu	36	3	185547120	185547120	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004366	exon24	c.A2665G	p.S889G	.	.	.
NKTR	4820	hgsc.bcm.edu	36	3	42637955	42637955	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005385	exon6	c.C317T	p.A106V	.	.	.
ZNF197	10168	hgsc.bcm.edu	36	3	44647683	44647683	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001024855	exon3	c.C516T	p.D172D	.	.	.
KIF15	56992	hgsc.bcm.edu	36	3	44821555	44821555	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020242	exon15	c.G1720C	p.E574Q	.	.	.
CADM2	253559	hgsc.bcm.edu	36	3	86044246	86044246	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001167674	exon5	c.G536A	p.R179H	.	.	.
GPR133	283383	hgsc.bcm.edu	36	12	130054700	130054700	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_198827	exon11	c.A1161T	p.K387N	.	.	.
CLSTN3	9746	hgsc.bcm.edu	36	12	7194828	7194828	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014718	exon16	c.C2429T	p.P810L	.	.	.
GALNTL6	442117	hgsc.bcm.edu	36	4	173967154	173967154	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001034845	exon6	c.G621T	p.K207N	.	.	.
EPHA5	2044	hgsc.bcm.edu	36	4	66150005	66150005	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004439	exon3	c.G859A	p.G287R	.	.	.
COL4A6	1288	hgsc.bcm.edu	36	X	107321354	107321354	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_033641	exon19	c.C1246T	p.R416C	.	.	.
AFF2	2334	hgsc.bcm.edu	36	X	147845397	147845397	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002025	exon11	c.C2122A	p.R708R	.	.	.
XDH	7498	hgsc.bcm.edu	36	2	31456279	31456279	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000379	exon13	c.G1200A	p.P400P	.	.	.
STON1-GTF2A1L	286749	hgsc.bcm.edu	36	2	48750396	48750396	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006872	exon7	c.G1010A	p.R337Q	.	.	.
NAGK	55577	hgsc.bcm.edu	36	2	71152358	71152358	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_017567	exon4	c.C386T	p.A129V	.	.	.
OBP2A	29991	hgsc.bcm.edu	36	9	137579584	137579584	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014582	exon4	c.C324T	p.D108D	.	.	.
ASAH2B	653308	hgsc.bcm.edu	36	10	52174986	52174986	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001079516	exon3	c.A105T	p.P35P	.	.	.
APC	324	hgsc.bcm.edu	36	5	112156042	112156042	+	Nonsense_Mutation	SNP	C	C	T	rs62619935	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001127510	exon8	c.C646T	p.R216X	.	.	.
ADAMTS19	171019	hgsc.bcm.edu	36	5	129100765	129100765	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133638	exon23	c.A3579G	p.E1193E	.	.	.
OXCT1	5019	hgsc.bcm.edu	36	5	41897241	41897241	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000436	exon3	c.A210C	p.P70P	.	.	.
HCN1	348980	hgsc.bcm.edu	36	5	45681174	45681174	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_021072	exon2	c.A719G	p.E240G	.	.	.
TSSK1B	83942	hgsc.bcm.edu	36	5	112797897	112797897	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_032028	exon1	c.C539T	p.A180V	.	.	.