Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
HPSE2	60495	broad.mit.edu	36	10	100370405	100370405	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001166246	exon8	c.G1149A	p.V383V	.	.	.
C10orf78	119392	broad.mit.edu	36	10	105872807	105872807	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001002759	exon2	c.T108C	p.S36S	.	.	.
PITRM1	10531	broad.mit.edu	36	10	3192417	3192418	+	Missense_Mutation	DNP	AG	GT	GT	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	AG	AG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014889	exon8	c.896_897AC	.	.	.	.
ANKRD30A	91074	broad.mit.edu	36	10	37495544	37495544	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052997	exon19	c.C1902T	p.L634L	.	.	.
FRMPD2	143162	broad.mit.edu	36	10	49116136	49116136	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001018071	exon8	c.G825A	p.A275A	.	.	.
ANK3	288	broad.mit.edu	36	10	61502218	61502218	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020987	exon37	c.G8427A	p.V2809V	.	.	.
OIT3	170392	broad.mit.edu	36	10	74336432	74336432	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152635	exon4	c.G617A	p.C206Y	.	.	.
ITIH5	80760	broad.mit.edu	36	10	7648001	7648002	+	Missense_Mutation	DNP	AG	CA	CA	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	AG	AG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_030569	exon13	c.2524_2525TG	.	.	.	.
NRAP	4892	broad.mit.edu	36	10	115389982	115389982	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198060	exon14	c.1422delG	p.L474fs	.	.	.
ADM	133	broad.mit.edu	36	11	10283846	10283847	+	Missense_Mutation	DNP	TG	CC	CC	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	TG	TG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001124	exon2	c.23_24CC	.	.	.	.
SORL1	6653	broad.mit.edu	36	11	120980238	120980239	+	Missense_Mutation	DNP	GC	CA	CA	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	GC	GC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003105	exon33	c.4646_4647CA	.	.	.	.
ESAM	90952	broad.mit.edu	36	11	124131771	124131771	+	Silent	SNP	C	G	G	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138961	exon3	c.G327C	p.L109L	.	.	.
OR52B4	143496	broad.mit.edu	36	11	4345271	4345271	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005161	exon1	c.G831A	p.P277P	.	.	.
PSMC3	5702	broad.mit.edu	36	11	47397274	47397274	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002804	exon11	c.G1178A	p.G393E	.	.	.
MTA2	9219	broad.mit.edu	36	11	62119912	62119912	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004739	exon13	c.G1142A	p.W381X	.	.	.
CABP4	57010	broad.mit.edu	36	11	66982421	66982421	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_145200	exon5	c.G655A	p.D219N	.	.	.
FAT3	120114	broad.mit.edu	36	11	91726881	91726881	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001008781	exon1	c.G1955T	p.R652I	.	.	.
FICD	11153	broad.mit.edu	36	12	107437368	107437368	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_007076	exon3	c.C1363T	p.P455S	.	.	.
TRAFD1	10906	broad.mit.edu	36	12	111070280	111070280	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006700	exon8	c.G947C	p.R316P	.	.	.
NOS1	4842	broad.mit.edu	36	12	116190245	116190246	+	Missense_Mutation	DNP	GA	CT	CT	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	GA	GA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000620	exon11	c.1926_1927AG	.	.	.	.
RPLP0	6175	broad.mit.edu	36	12	119121143	119121143	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001002	exon5	c.T362C	p.V121A	.	.	.
EP400	57634	broad.mit.edu	36	12	131038273	131038273	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015409	exon7	c.A2291C	p.K764T	.	.	.
COL2A1	1280	broad.mit.edu	36	12	46656102	46656102	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033150	exon49	c.G3301A	p.G1101S	.	.	.
WNT10B	7480	broad.mit.edu	36	12	47646411	47646411	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003394	exon5	c.C904T	p.R302C	.	.	.
MCRS1	10445	broad.mit.edu	36	12	48239804	48239805	+	Nonsense_Mutation	DNP	CC	TT	TT	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001012300	exon10	c.1016_1017AA	.	.	.	.
GALNT6	11226	broad.mit.edu	36	12	50045485	50045486	+	Missense_Mutation	DNP	GG	AT	AT	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	GG	GG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007210	exon5	c.809_810AT	.	.	.	.
GLS2	27165	broad.mit.edu	36	12	55159150	55159150	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013267	exon4	c.C487G	p.H163D	.	.	.
STAC3	246329	broad.mit.edu	36	12	55924613	55924613	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145064	exon9	c.C780A	p.A260A	.	.	.
GLI1	2735	broad.mit.edu	36	12	56151064	56151064	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001160045	exon10	c.C1890T	p.P630P	.	.	.
CD163L1	283316	broad.mit.edu	36	12	7418510	7418510	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_174941	exon13	c.C3204T	p.S1068S	.	.	.
SLC2A3	6515	broad.mit.edu	36	12	7974472	7974472	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006931	exon5	c.G544A	p.E182K	.	.	.
RASL11A	387496	broad.mit.edu	36	13	26745612	26745612	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_206827	exon4	c.C710A	p.A237D	.	.	.
RNF219	79596	broad.mit.edu	36	13	78117127	78117127	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024546	exon2	c.C79T	p.Q27X	.	.	.
FARP1	10160	broad.mit.edu	36	13	97881312	97881312	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005766	exon18	c.C1920A	p.H640Q	.	.	.
AHNAK2	113146	broad.mit.edu	36	14	104482758	104482758	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138420	exon7	c.C10075A	p.Q3359K	.	.	.
AHNAK2	113146	broad.mit.edu	36	14	104483678	104483678	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138420	exon7	c.C9155T	p.P3052L	.	.	.
AHNAK2	113146	broad.mit.edu	36	14	104485938	104485938	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138420	exon7	c.C6895T	p.R2299W	.	.	.
AHNAK2	113146	broad.mit.edu	36	14	104489984	104489984	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_138420	exon7	c.C2849T	p.A950V	.	.	.
SLC7A8	23428	broad.mit.edu	36	14	22705498	22705498	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012244	exon2	c.G243A	p.V81V	.	.	.
SOS2	6655	broad.mit.edu	36	14	49717065	49717065	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006939	exon7	c.G944T	p.R315I	.	.	.
SPTB	6710	broad.mit.edu	36	14	64333128	64333128	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001024858	exon10	c.T1241A	p.L414H	.	.	.
RGS6	9628	broad.mit.edu	36	14	72009379	72009379	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004296	exon9	c.C583G	p.Q195E	.	.	.
NGB	58157	broad.mit.edu	36	14	76804640	76804641	+	Missense_Mutation	DNP	GT	CC	CC	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	GT	GT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021257	exon3	c.242_243GG	.	.	.	.
POTEB	339010	broad.mit.edu	36	15	19336268	19336268	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_207355	exon1	c.C33T	p.A11A	.	.	.
LPCAT4	254531	broad.mit.edu	36	15	32444682	32444683	+	Missense_Mutation	DNP	CA	AG	AG	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	CA	CA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153613	exon3	c.296_297CT	.	.	.	.
THBS1	7057	broad.mit.edu	36	15	37669382	37669382	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003246	exon13	c.G2011A	p.D671N	.	.	.
SLC27A2	11001	broad.mit.edu	36	15	48284752	48284752	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001159629	exon3	c.A713C	p.K238T	.	.	.
KIAA1370	56204	broad.mit.edu	36	15	50688962	50688962	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_019600	exon6	c.G1441A	p.E481K	.	.	.
IGDCC4	57722	broad.mit.edu	36	15	63468365	63468365	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020962	exon15	c.C2541A	p.P847P	.	.	.
SH2D7	646892	broad.mit.edu	36	15	76180615	76180615	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001101404	exon5	c.G965T	p.G322V	.	.	.
ADAMTSL3	57188	broad.mit.edu	36	15	82442364	82442365	+	Missense_Mutation	DNP	AA	CT	CT	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	AA	AA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_207517	exon21	c.2980_2981CT	.	.	.	.
USP31	57478	broad.mit.edu	36	16	22987635	22987636	+	Nonsense_Mutation	DNP	CC	AT	AT	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020718	exon16	c.3291_3292AT	.	.	.	.
CACNG3	10368	broad.mit.edu	36	16	24273759	24273759	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006539	exon3	c.G400A	p.V134I	.	.	.
TMEM219	124446	broad.mit.edu	36	16	29887046	29887047	+	Missense_Mutation	DNP	AG	TA	TA	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	AG	AG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_194280	exon4	c.555_556TA	.	.	.	.
PRSS8	5652	broad.mit.edu	36	16	31051364	31051364	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002773	exon5	c.C592T	p.R198C	.	.	.
ABCC11	85320	broad.mit.edu	36	16	46778793	46778793	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_145186	exon21	c.G2753A	p.R918Q	.	.	.
GNAO1	2775	broad.mit.edu	36	16	54920086	54920087	+	Missense_Mutation	DNP	GA	AG	AG	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	GA	GA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138736	exon4	c.346_347AG	.	.	.	.
TRADD	8717	broad.mit.edu	36	16	65747934	65747934	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003789	exon2	c.C131T	p.A44V	.	.	.
C16orf7	9605	broad.mit.edu	36	16	88310653	88310653	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004913	exon3	c.C254A	p.T85K	.	.	.
SERPINF1	5176	broad.mit.edu	36	17	1627448	1627449	+	Missense_Mutation	DNP	CC	GA	GA	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002615	exon8	c.1215_1216GA	.	.	.	.
MAPK7	5598	broad.mit.edu	36	17	19225091	19225091	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_139033	exon4	c.C976T	p.R326C	.	.	.
GAS2L2	246176	broad.mit.edu	36	17	31098323	31098323	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_139285	exon5	c.C910A	p.Q304K	.	.	.
C17orf66	256957	broad.mit.edu	36	17	31216413	31216414	+	Missense_Mutation	DNP	TA	GT	GT	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	TA	TA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152781	exon3	c.238_239AC	.	.	.	.
FAM64A	54478	broad.mit.edu	36	17	6291585	6291585	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_019013	exon3	c.G373T	p.A125S	.	.	.
TP53	7157	broad.mit.edu	36	17	7517845	7517845	+	Missense_Mutation	SNP	C	T	T	rs28934576	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon8	c.G818A	p.R273H	 TP53,central_nervous_system,brain,Substitution - Missense,-1 	.	.
DNAH2	146754	broad.mit.edu	36	17	7630717	7630717	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020877	exon40	c.G6453C	p.R2151R	.	.	.
ROCK1	6093	broad.mit.edu	36	18	16862739	16862739	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005406	exon10	c.C1207T	p.R403C	.	.	.
ESCO1	114799	broad.mit.edu	36	18	17366574	17366574	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_052911	exon11	c.G2233A	p.E745K	.	.	.
SMAD4	4089	broad.mit.edu	36	18	46858715	46858715	+	Nonsense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005359	exon12	c.C1539G	p.Y513X	.	.	.
GNA15	2769	broad.mit.edu	36	19	3106864	3106865	+	Missense_Mutation	DNP	AT	CC	CC	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	AT	AT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002068	exon5	c.658_659CC	.	.	.	.
FFAR2	2867	broad.mit.edu	36	19	40632791	40632792	+	Missense_Mutation	DNP	CT	GG	GG	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	CT	CT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005306	exon1	c.335_336GG	.	.	.	.
ZNF781	163115	broad.mit.edu	36	19	42851934	42851934	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152605	exon4	c.G956A	p.R319K	.	.	.
ZC3H4	23211	broad.mit.edu	36	19	52281584	52281584	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015168	exon6	c.C767G	p.S256W	.	.	.
FUT1	2523	broad.mit.edu	36	19	53945763	53945763	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000148	exon4	c.G588A	p.Q196Q	.	.	.
SYT3	84258	broad.mit.edu	36	19	55827620	55827620	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032298	exon2	c.G409T	p.A137S	.	.	.
SHANK1	50944	broad.mit.edu	36	19	55857334	55857334	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016148	exon23	c.C6186T	p.S2062S	.	.	.
IGLON5	402665	broad.mit.edu	36	19	56518846	56518846	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001101372	exon3	c.G277A	p.E93K	.	.	.
NLRP8	126205	broad.mit.edu	36	19	61158792	61158792	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_176811	exon3	c.A1556G	p.Y519C	.	.	.
VAV1	7409	broad.mit.edu	36	19	6779154	6779154	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005428	exon10	c.G995T	p.R332L	.	.	.
ZNF568	374900	broad.mit.edu	36	19	42132342	42132342	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G	G	-	G	-	Unknown	Valid	Germline	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198539	exon7	c.447delG	p.K149fs	.	.	.
CELSR2	1952	broad.mit.edu	36	1	109615364	109615364	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001408	exon26	c.G7599A	p.M2533I	.	.	.
PTGFRN	5738	broad.mit.edu	36	1	117293532	117293532	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020440	exon4	c.C1028T	p.S343L	.	.	.
WDR3	10885	broad.mit.edu	36	1	118290272	118290272	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006784	exon12	c.G1369T	p.A457S	.	.	.
TCHH	7062	broad.mit.edu	36	1	150351001	150351001	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007113	exon2	c.A1316G	p.E439G	.	.	.
OR6K6	128371	broad.mit.edu	36	1	156991604	156991604	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001005184	exon1	c.C375A	p.C125X	.	.	.
FCRLB	127943	broad.mit.edu	36	1	159963745	159963745	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001002901	exon6	c.G950T	p.R317I	.	.	.
CENPL	91687	broad.mit.edu	36	1	172038947	172038947	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127181	exon6	c.C878T	p.P293L	.	.	.
PRELP	5549	broad.mit.edu	36	1	201722464	201722464	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002725	exon3	c.C981T	p.N327N	.	.	.
AVPR1B	553	broad.mit.edu	36	1	204391449	204391449	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000707	exon1	c.C386T	p.T129M	.	.	.
TMEM206	55248	broad.mit.edu	36	1	210625272	210625272	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001198862	exon5	c.C645T	p.I215I	.	.	.
KCNK2	3776	broad.mit.edu	36	1	213326404	213326404	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001017424	exon2	c.G105A	p.T35T	.	.	.
C1orf198	84886	broad.mit.edu	36	1	229046262	229046262	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001136494	exon5	c.C274T	p.Q92X	.	.	.
HEATR1	55127	broad.mit.edu	36	1	234820829	234820829	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018072	exon12	c.C1471A	p.L491I	.	.	.
RYR2	6262	broad.mit.edu	36	1	235947169	235947169	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001035	exon72	c.C10372T	p.R3458W	.	.	.
NIPAL3	57185	broad.mit.edu	36	1	24652571	24652571	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020448	exon7	c.G627T	p.V209V	.	.	.
WDR8	49856	broad.mit.edu	36	1	3538712	3538712	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017818	exon10	c.G973C	p.D325H	.	.	.
ERMAP	114625	broad.mit.edu	36	1	43073321	43073322	+	Missense_Mutation	DNP	CT	AA	AA	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	CT	CT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001017922	exon5	c.459_460AA	.	.	.	.
LRP8	7804	broad.mit.edu	36	1	53509599	53509599	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017522	exon6	c.C627A	p.N209K	.	.	.
C8B	732	broad.mit.edu	36	1	57182018	57182018	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000066	exon8	c.G1173C	p.E391D	.	.	.
ESPN	83715	broad.mit.edu	36	1	6427256	6427256	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031475	exon6	c.T1119C	p.P373P	.	.	.
WLS	79971	broad.mit.edu	36	1	68388607	68388607	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001193334	exon5	c.T551C	p.I184T	.	.	.
EMILIN3	90187	broad.mit.edu	36	20	39424242	39424243	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052846	exon4	c.1381_1382insG	p.W461fs	.	.	.
NXT1	29107	broad.mit.edu	36	20	23282952	23282952	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013248	exon2	c.C274T	p.L92F	.	.	.
PTPRA	5786	broad.mit.edu	36	20	2955783	2955783	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_080840	exon18	c.G1698A	p.V566V	.	.	.
PLUNC	51297	broad.mit.edu	36	20	31289648	31289648	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016583	exon3	c.C287T	p.T96M	.	.	.
CEP250	11190	broad.mit.edu	36	20	33526869	33526869	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_007186	exon15	c.C1700T	p.T567I	.	.	.
PIGT	51604	broad.mit.edu	36	20	43478667	43478667	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015937	exon2	c.G284A	p.R95K	.	.	.
RSPO4	343637	broad.mit.edu	36	20	895863	895864	+	Missense_Mutation	DNP	GG	TA	TA	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	GG	GG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001029871	exon3	c.362_363TA	.	.	.	.
DSCR3	10311	broad.mit.edu	36	21	37526590	37526590	+	Silent	SNP	C	G	G	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006052	exon5	c.G465C	p.V155V	.	.	.
COL6A2	1292	broad.mit.edu	36	21	46358398	46358398	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001849	exon5	c.G784T	p.G262C	.	.	.
KREMEN1	83999	broad.mit.edu	36	22	27864776	27864777	+	Missense_Mutation	DNP	AA	CC	CC	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	AA	AA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032045	exon7	c.1129_1130CC	.	.	.	.
SEC14L2	23541	broad.mit.edu	36	22	29133508	29133508	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033382	exon5	c.C339G	p.F113L	.	.	.
LIMK2	3985	broad.mit.edu	36	22	29992097	29992098	+	Missense_Mutation	DNP	CT	AG	AG	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	CT	CT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005569	exon8	c.1020_1021AG	.	.	.	.
GTSE1	51512	broad.mit.edu	36	22	45101054	45101054	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016426	exon9	c.G1563T	p.L521L	.	.	.
SNX17	9784	broad.mit.edu	36	2	27447698	27447699	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014748	exon2	c.122_123insG	p.L41fs	.	.	.
ZC3H8	84524	broad.mit.edu	36	2	112710708	112710708	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032494	exon4	c.C406A	p.H136N	.	.	.
RAB3GAP1	22930	broad.mit.edu	36	2	135627769	135627769	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012233	exon19	c.T2142A	p.D714E	.	.	.
UBXN4	23190	broad.mit.edu	36	2	136256883	136256883	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014607	exon13	c.G1483A	p.D495N	.	.	.
TTN	7273	broad.mit.edu	36	2	179208169	179208169	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003319	exon56	c.A14797G	p.K4933E	.	.	.
TTN	7273	broad.mit.edu	36	2	179303081	179303081	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_133378	exon59	c.C14559A	p.A4853A	.	.	.
KCTD18	130535	broad.mit.edu	36	2	201063561	201063561	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152387	exon7	c.C788T	p.A263V	.	.	.
FN1	2335	broad.mit.edu	36	2	215982666	215982666	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_212476	exon15	c.G2164A	p.V722M	.	.	.
COL4A4	1286	broad.mit.edu	36	2	227627635	227627635	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000092	exon31	c.G2779T	p.G927X	.	.	.
UGT1A9	54600	broad.mit.edu	36	2	234245815	234245815	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021027	exon1	c.G496A	p.V166M	.	.	.
COL6A3	1293	broad.mit.edu	36	2	237923555	237923555	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_057166	exon25	c.G5032A	p.G1678R	.	.	.
PER2	8864	broad.mit.edu	36	2	238829238	238829238	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_022817	exon18	c.C2119G	p.P707A	.	.	.
C2orf16	84226	broad.mit.edu	36	2	27658237	27658237	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032266	exon1	c.G5294T	p.S1765I	.	.	.
C2orf71	388939	broad.mit.edu	36	2	29150349	29150349	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001029883	exon1	c.G283A	p.G95R	.	.	.
SLC3A1	6519	broad.mit.edu	36	2	44356559	44356559	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000341	exon1	c.C381A	p.Y127X	.	.	.
BCL11A	53335	broad.mit.edu	36	2	60541419	60541419	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022893	exon4	c.C2132T	p.S711L	.	.	.
YWHAQ	10971	broad.mit.edu	36	2	9687964	9687964	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006826	exon2	c.C69T	p.A23A	.	.	.
ATP2B2	491	broad.mit.edu	36	3	10357240	10357240	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001683	exon17	c.C2931T	p.V977V	.	.	.
MSL2	55167	broad.mit.edu	36	3	137353928	137353928	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018133	exon2	c.C485T	p.S162L	.	.	.
FAM131A	131408	broad.mit.edu	36	3	185542605	185542605	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001171093	exon4	c.G128C	p.R43P	.	.	.
XYLB	9942	broad.mit.edu	36	3	38413614	38413614	+	Silent	SNP	C	G	G	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005108	exon17	c.C1398G	p.A466A	.	.	.
SCN11A	11280	broad.mit.edu	36	3	38863273	38863273	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014139	exon26	c.C5292T	p.N1764N	.	.	.
CCDC13	152206	broad.mit.edu	36	3	42725555	42725555	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_144719	exon16	c.G2069A	p.R690Q	.	.	.
SETD5	55209	broad.mit.edu	36	3	9458902	9458902	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080517	exon10	c.C1050T	p.I350I	.	.	.
TMEM111	55831	broad.mit.edu	36	3	9980795	9980795	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018447	exon8	c.C744T	p.F248F	.	.	.
SEC24D	9871	broad.mit.edu	36	4	119885579	119885579	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014822	exon14	c.G1792A	p.D598N	.	.	.
FAT4	79633	broad.mit.edu	36	4	126593014	126593014	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024582	exon9	c.T11393C	p.V3798A	.	.	.
GUCY1A3	2982	broad.mit.edu	36	4	156853733	156853733	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001130682	exon7	c.G1120A	p.V374I	.	.	.
SPATA18	132671	broad.mit.edu	36	4	52637833	52637833	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145263	exon7	c.C890T	p.A297V	.	.	.
BTC	685	broad.mit.edu	36	4	75892375	75892375	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001729	exon5	c.G437A	p.R146Q	.	.	.
UNC5C	8633	broad.mit.edu	36	4	96390732	96390732	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003728	exon5	c.C704A	p.A235E	.	.	.
EFNA5	1946	broad.mit.edu	36	5	106744874	106744874	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001962	exon5	c.C668T	p.A223V	.	.	.
TERT	7015	broad.mit.edu	36	5	1331865	1331865	+	De_novo_Start_OutOfFrame	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198253	exon6	c.C2177T	p.T726M	.	.	.
FAM13B	51306	broad.mit.edu	36	5	137382012	137382012	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016603	exon4	c.T248C	p.V83A	.	.	.
FBXL7	23194	broad.mit.edu	36	5	15989659	15989659	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012304	exon4	c.G840A	p.T280T	.	.	.
STC2	8614	broad.mit.edu	36	5	172677691	172677691	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003714	exon4	c.G674A	p.R225H	.	.	.
C5orf42	65250	broad.mit.edu	36	5	37205981	37205981	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_023073	exon33	c.C6381T	p.N2127N	.	.	.
TCP10	6953	broad.mit.edu	36	6	167706714	167706714	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004610	exon8	c.C914T	p.S305F	.	.	.
HIST1H2AM	8336	broad.mit.edu	36	6	27968735	27968735	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003514	exon1	c.T172C	p.Y58H	.	.	.
VPS52	6293	broad.mit.edu	36	6	33345987	33345987	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022553	exon2	c.A142T	p.T48S	.	.	.
SLC26A8	116369	broad.mit.edu	36	6	36073588	36073588	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052961	exon5	c.G532A	p.V178I	.	.	.
DST	667	broad.mit.edu	36	6	56599984	56599984	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015548	exon20	c.G3088A	p.E1030K	.	.	.
BTN2A3	54718	broad.mit.edu	36	6	26538991	26538991	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ZAN	7455	broad.mit.edu	36	7	100226577	100226578	+	Missense_Mutation	DNP	AT	GG	GG	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	AT	AT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173059	exon40	c.7434_7435GG	.	.	.	.
MLL5	55904	broad.mit.edu	36	7	104535459	104535459	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182931	exon22	c.C3319T	p.L1107L	.	.	.
FAM180A	389558	broad.mit.edu	36	7	135069342	135069342	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_205855	exon3	c.G443T	p.W148L	.	.	.
TBXAS1	6916	broad.mit.edu	36	7	139304004	139304004	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001061	exon8	c.C794G	p.A265G	.	.	.
BRAF	673	broad.mit.edu	36	7	140099605	140099605	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004333	exon15	c.T1799A	p.V600E	 BRAF,pituitary,NS,Substitution - Missense,0 	.	.
URGCP	55665	broad.mit.edu	36	7	43885038	43885039	+	Missense_Mutation	DNP	GG	AT	AT	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	GG	GG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001077664	exon6	c.419_420AT	.	.	.	.
RNF216	54476	broad.mit.edu	36	7	5718956	5718956	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_207116	exon12	c.T1727C	p.V576A	.	.	.
GRM3	2913	broad.mit.edu	36	7	86253660	86253660	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000840	exon3	c.C616T	p.R206C	.	.	.
PPP1R9A	55607	broad.mit.edu	36	7	94378313	94378314	+	Missense_Mutation	DNP	AA	GC	GC	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	AA	AA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001166163	exon1	c.952_953GC	.	.	.	.
ATAD2	29028	broad.mit.edu	36	8	124437883	124437883	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014109	exon13	c.C1573T	p.P525S	.	.	.
FAM49B	51571	broad.mit.edu	36	8	130935751	130935751	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016623	exon10	c.G459A	p.Q153Q	.	.	.
CSMD1	64478	broad.mit.edu	36	8	3419937	3419937	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033225	exon10	c.C1282A	p.P428T	.	.	.
UNC5D	137970	broad.mit.edu	36	8	35661807	35661807	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_080872	exon6	c.C917T	p.P306L	.	.	.
DECR1	1666	broad.mit.edu	36	8	91124203	91124203	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001359	exon7	c.A737C	p.K246T	.	.	.
ZER1	10444	broad.mit.edu	36	9	130553299	130553299	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006336	exon7	c.A1108C	p.I370L	.	.	.
C9orf96	169436	broad.mit.edu	36	9	135249318	135249319	+	Missense_Mutation	DNP	CT	TA	TA	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	CT	CT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153710	exon8	c.663_664TA	.	.	.	.
PIGO	84720	broad.mit.edu	36	9	35081445	35081445	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032634	exon7	c.G2439A	p.E813E	.	.	.
PIGO	84720	broad.mit.edu	36	9	35081595	35081595	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032634	exon7	c.G2289A	p.V763V	.	.	.
ANKRD20A3	441425	broad.mit.edu	36	9	42358441	42358441	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001012419	exon1	c.G31T	p.G11C	.	.	.
RANBP6	26953	broad.mit.edu	36	9	6004639	6004639	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012416	exon1	c.A969C	p.L323L	.	.	.
C9orf79	286234	broad.mit.edu	36	9	89692847	89692847	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_178828	exon4	c.A3625T	p.R1209W	.	.	.
ROR2	4920	broad.mit.edu	36	9	93525975	93525975	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004560	exon9	c.C2622T	p.V874V	.	.	.
ZNF367	195828	broad.mit.edu	36	9	98194610	98194610	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153695	exon4	c.C721T	p.R241C	.	.	.
TMOD1	7111	broad.mit.edu	36	9	99355447	99355447	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001166116	exon4	c.C341T	p.P114L	.	.	.
MCART6	401612	broad.mit.edu	36	X	103235923	103235923	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001012755	exon2	c.C674T	p.T225I	.	.	.
MUM1L1	139221	broad.mit.edu	36	X	105337642	105337642	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152423	exon5	c.G1561A	p.D521N	.	.	.
MID2	11043	broad.mit.edu	36	X	106970931	106970931	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012216	exon2	c.G380T	p.R127M	.	.	.
COL4A6	1288	broad.mit.edu	36	X	107290434	107290434	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033641	exon43	c.G4440A	p.P1480P	.	.	.
TMEM164	84187	broad.mit.edu	36	X	109274730	109274730	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032227	exon5	c.G556A	p.V186M	.	.	.
DCAF12L1	139170	broad.mit.edu	36	X	125513310	125513310	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178470	exon1	c.C963T	p.Y321Y	.	.	.
WDR13	64743	broad.mit.edu	36	X	48348229	48348229	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001166426	exon8	c.G1047C	p.A349A	.	.	.
FAM104B	90736	broad.mit.edu	36	X	55186942	55186942	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138362	exon4	c.G343T	p.V115F	.	.	.
RRAGB	10325	broad.mit.edu	36	X	55801469	55801469	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016656	exon11	c.G1093C	p.D365H	.	.	.
FAM123B	139285	broad.mit.edu	36	X	63329419	63329419	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152424	exon2	c.A473C	p.K158T	.	.	.
MTMR8	55613	broad.mit.edu	36	X	63472713	63472713	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017677	exon10	c.G1122T	p.W374C	.	.	.
YIPF6	286451	broad.mit.edu	36	X	67648534	67648534	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173834	exon2	c.G176A	p.R59H	.	.	.
ERCC6L	54821	broad.mit.edu	36	X	71343145	71343145	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017669	exon2	c.G2197T	p.E733X	.	.	.
MAGEE1	57692	broad.mit.edu	36	X	75566331	75566331	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020932	exon1	c.G1604A	p.R535Q	.	.	.
KLHL4	56062	broad.mit.edu	36	X	86773935	86773935	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_057162	exon7	c.G1394A	p.R465H	.	.	.