Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
KCNMA1	3778	broad.mit.edu	36	10	78502899	78502899	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001161353	exon14	c.A1711T	p.M571L	.	.	.
PHLDB1	23187	broad.mit.edu	36	11	118021384	118021384	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001144758	exon16	c.A3222T	p.A1074A	.	.	.
KCNA4	3739	broad.mit.edu	36	11	29990027	29990027	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002233	exon2	c.T775C	p.Y259H	.	.	.
STIM1	6786	broad.mit.edu	36	11	4069435	4069435	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003156	exon12	c.T1889C	p.V630A	.	.	.
C11orf66	220004	broad.mit.edu	36	11	61011211	61011211	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145017	exon11	c.C966T	p.S322S	.	.	.
IGHMBP2	3508	broad.mit.edu	36	11	68460409	68460409	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002180	exon13	c.1885delT	p.Y629fs	.	.	.
C12orf51	283450	broad.mit.edu	36	12	111205306	111205306	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001109662	exon8	c.G1087A	p.D363N	.	.	.
MED13L	23389	broad.mit.edu	36	12	114928543	114928543	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015335	exon12	c.G2295A	p.V765V	.	.	.
ZNF26	7574	broad.mit.edu	36	12	132097089	132097089	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_019591	exon4	c.G551A	p.R184H	.	.	.
KRAS	3845	broad.mit.edu	36	12	25289552	25289552	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G34T	p.G12C	 KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,+1 	.	.
PRPF40B	25766	broad.mit.edu	36	12	48314646	48314646	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001031698	exon11	c.G929T	p.R310L	.	.	.
KRT74	121391	broad.mit.edu	36	12	51253439	51253439	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_175053	exon1	c.C390A	p.D130E	.	.	.
NTN4	59277	broad.mit.edu	36	12	94601618	94601618	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_021229	exon6	c.C1181T	p.P394L	.	.	.
GRK1	6011	broad.mit.edu	36	13	113373831	113373831	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002929	exon3	c.G844A	p.V282M	.	.	.
SLITRK1	114798	broad.mit.edu	36	13	83351604	83351604	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052910	exon1	c.A2040C	p.A680A	.	.	.
DYNC1H1	1778	broad.mit.edu	36	14	101577740	101577740	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001376	exon65	c.C12018T	p.H4006H	.	.	.
AHNAK2	113146	broad.mit.edu	36	14	104484247	104484248	+	Missense_Mutation	DNP	GC	AT	AT	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	GC	GC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138420	exon7	c.8585_8586AT	.	.	.	.
RNASE11	122651	broad.mit.edu	36	14	20121950	20121950	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145250	exon3	c.C524A	p.T175N	.	.	.
RALGAPA1	253959	broad.mit.edu	36	14	35314675	35314675	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_194301	exon2	c.A134T	p.Q45L	.	.	.
DISP2	85455	broad.mit.edu	36	15	38447931	38447932	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033510	exon8	c.2326_2327insG	p.W776fs	.	.	.
RYR3	6263	broad.mit.edu	36	15	31553011	31553011	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001036	exon2	c.G151A	p.E51K	.	.	.
RASGRP1	10125	broad.mit.edu	36	15	36574118	36574118	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005739	exon16	c.C2016T	p.A672A	.	.	.
FBN1	2200	broad.mit.edu	36	15	46516493	46516493	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000138	exon53	c.C6453T	p.C2151C	.	.	.
MYO5A	4644	broad.mit.edu	36	15	50451810	50451810	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000259	exon21	c.C2620T	p.R874W	.	.	.
MYO1E	4643	broad.mit.edu	36	15	57311219	57311219	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004998	exon6	c.G484A	p.V162I	.	.	.
VPS13C	54832	broad.mit.edu	36	15	60010738	60010738	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017684	exon48	c.G5752A	p.A1918T	.	.	.
ETFA	2108	broad.mit.edu	36	15	74365071	74365071	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127716	exon6	c.G479A	p.R160Q	.	.	.
RASGRF1	5923	broad.mit.edu	36	15	77064587	77064587	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002891	exon24	c.T3279A	p.I1093I	.	.	.
SRRM2	23524	broad.mit.edu	36	16	2758003	2758003	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016333	exon11	c.T7473C	p.N2491N	.	.	.
RRAD	6236	broad.mit.edu	36	16	65513677	65513678	+	Missense_Mutation	DNP	AC	GT	GT	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	AC	AC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004165	exon5	c.729_730AC	.	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69579403	69579403	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032821	exon27	c.C4116T	p.Y1372Y	.	.	.
TNFRSF13B	23495	broad.mit.edu	36	17	16783599	16783599	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012452	exon5	c.G869T	p.G290V	.	.	.
KIAA0100	9703	broad.mit.edu	36	17	23989461	23989461	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014680	exon13	c.C1448A	p.A483E	.	.	.
KRT13	3860	broad.mit.edu	36	17	36913113	36913113	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153490	exon3	c.C687T	p.I229I	.	.	.
KRT15	3866	broad.mit.edu	36	17	36926628	36926629	+	Missense_Mutation	DNP	GC	CT	CT	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	GC	GC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002275	exon3	c.695_696AG	.	.	.	.
AXIN2	8313	broad.mit.edu	36	17	60963563	60963563	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004655	exon7	c.G1793A	p.G598E	.	.	.
TP53	7157	broad.mit.edu	36	17	7518988	7518988	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001126114	exon6	c.C586T	p.R196X	 TP53,central_nervous_system,brain,Substitution - Missense,-2 	.	.
CCDC40	55036	broad.mit.edu	36	17	75628274	75628274	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017950	exon3	c.G162A	p.E54E	.	.	.
CARD14	79092	broad.mit.edu	36	17	75790725	75790725	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024110	exon15	c.C2130T	p.F710F	.	.	.
CNTROB	116840	broad.mit.edu	36	17	7778265	7778265	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_053051	exon2	c.C355T	p.R119W	.	.	.
ST8SIA5	29906	broad.mit.edu	36	18	42514276	42514276	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013305	exon7	c.G858A	p.S286S	.	.	.
ZNF20	7568	broad.mit.edu	36	19	12107700	12107700	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_021143	exon2	c.C23T	p.A8V	.	.	.
ZNF91	7644	broad.mit.edu	36	19	23335882	23335882	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003430	exon4	c.G1739T	p.G580V	.	.	.
ZNF91	7644	broad.mit.edu	36	19	23349393	23349393	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003430	exon2	c.T44A	p.F15Y	.	.	.
ARHGAP33	115703	broad.mit.edu	36	19	40963355	40963355	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_052948	exon9	c.T734A	p.L245H	.	.	.
FCGBP	8857	broad.mit.edu	36	19	45057983	45057983	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003890	exon30	c.C14091T	p.D4697D	.	.	.
MEIS3	56917	broad.mit.edu	36	19	52604245	52604245	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020160	exon8	c.C781T	p.R261W	.	.	.
ZNRF4	148066	broad.mit.edu	36	19	5407387	5407387	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_181710	exon1	c.G885A	p.Q295Q	.	.	.
LIM2	3982	broad.mit.edu	36	19	56577531	56577531	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001161748	exon3	c.C278A	p.S93Y	.	.	.
SIGLEC10	89790	broad.mit.edu	36	19	56611955	56611955	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001171157	exon3	c.G483A	p.T161T	.	.	.
SIGLEC8	27181	broad.mit.edu	36	19	56650556	56650556	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014442	exon4	c.A979T	p.T327S	.	.	.
CLEC4M	10332	broad.mit.edu	36	19	7736731	7736731	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001144908	exon4	c.G422A	p.R141Q	.	.	.
LPAR2	9170	broad.mit.edu	36	19	19596224	19596224	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004720	exon3	c.897delT	p.D299fs	.	.	.
LPAR2	9170	broad.mit.edu	36	19	19596233	19596236	+	Frame_Shift_Del	DEL	AGAG	-	-	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	AGAG	AGAG	AGAG	AGAG	AGAG	AGAG	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004720	exon3	c.885_888del	p.295_296del	.	.	.
YBX1	4904	broad.mit.edu	36	1	42939266	42939267	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004559	exon7	c.968_969insT	p.A323fs	.	.	.
AMY2A	279	broad.mit.edu	36	1	103968113	103968113	+	Nonsense_Mutation	SNP	C	T	T	rs1832269	byCluster	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000699	exon8	c.C1204T	p.R402X	.	.	.
PDE4DIP	9659	broad.mit.edu	36	1	143642694	143642694	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001002811	exon1	c.A372C	p.R124S	.	.	.
PADI4	23569	broad.mit.edu	36	1	17555075	17555075	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012387	exon12	c.C1321T	p.R441W	.	.	.
REN	5972	broad.mit.edu	36	1	202391663	202391663	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000537	exon9	c.G967A	p.V323M	.	.	.
KIF17	57576	broad.mit.edu	36	1	20881913	20881913	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001122819	exon11	c.G2283T	p.K761N	.	.	.
LYST	1130	broad.mit.edu	36	1	233892970	233892970	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000081	exon53	c.T11299C	p.Y3767H	.	.	.
DCDC2B	149069	broad.mit.edu	36	1	32450777	32450778	+	Missense_Mutation	DNP	CT	GG	GG	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	CT	CT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001099434	exon5	c.627_628GG	.	.	.	.
ASB17	127247	broad.mit.edu	36	1	76170501	76170501	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_080868	exon1	c.C64A	p.L22I	.	.	.
CTNNBIP1	56998	broad.mit.edu	36	1	9854688	9854688	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001012329	exon3	c.G22A	p.G8R	.	.	.
C20orf117	140710	broad.mit.edu	36	20	34877112	34877112	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_080627	exon5	c.G2147A	p.R716H	.	.	.
SAMHD1	25939	broad.mit.edu	36	20	34967239	34967239	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015474	exon12	c.G1352C	p.R451P	.	.	.
PTPRT	11122	broad.mit.edu	36	20	40853365	40853365	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_133170	exon3	c.G370A	p.V124M	.	.	.
TP53TG5	27296	broad.mit.edu	36	20	43437169	43437169	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014477	exon4	c.C692A	p.T231N	.	.	.
ZNF335	63925	broad.mit.edu	36	20	44025838	44025838	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022095	exon8	c.T1301C	p.L434P	.	.	.
APCDD1L	164284	broad.mit.edu	36	20	56469606	56469606	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153360	exon4	c.C1152G	p.A384A	.	.	.
C20orf195	79025	broad.mit.edu	36	20	61658097	61658098	+	Missense_Mutation	DNP	GA	CG	CG	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	GA	GA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024059	exon2	c.637_638CG	.	.	.	.
SON	6651	broad.mit.edu	36	21	33845035	33845035	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032195	exon3	c.C1628T	p.T543M	.	.	.
PCNT	5116	broad.mit.edu	36	21	46672018	46672019	+	Missense_Mutation	DNP	GA	CT	CT	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	GA	GA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006031	exon34	c.7375_7376CT	.	.	.	.
CABIN1	23523	broad.mit.edu	36	22	22789580	22789580	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001199281	exon14	c.T1855A	p.W619R	.	.	.
FOXRED2	80020	broad.mit.edu	36	22	35230358	35230358	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001102371	exon4	c.C782T	p.A261V	.	.	.
MICALL1	85377	broad.mit.edu	36	22	36657872	36657872	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033386	exon10	c.C2002G	p.L668V	.	.	.
SMARCB1	6598	broad.mit.edu	36	22	22463964	22463966	+	In_Frame_Del	DEL	TTC	-	-	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	TTC	TTC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003073	exon2	c.115_117del	p.39_39del	.	.	.
ATP6V1C2	245973	broad.mit.edu	36	2	10821972	10821972	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001039362	exon5	c.G348A	p.P116P	.	.	.
LRP1B	53353	broad.mit.edu	36	2	141397063	141397063	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018557	exon21	c.G3260T	p.G1087V	.	.	.
TTN	7273	broad.mit.edu	36	2	179304433	179304433	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_133378	exon56	c.G13573T	p.E4525X	.	.	.
TTN	7273	broad.mit.edu	36	2	179373625	179373625	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_133379	exon4	c.C325T	p.R109X	.	.	.
ZNF142	7701	broad.mit.edu	36	2	219222404	219222405	+	Missense_Mutation	DNP	CT	GG	GG	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	CT	CT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001105537	exon6	c.470_471CC	.	.	.	.
OTOF	9381	broad.mit.edu	36	2	26538499	26538499	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_194323	exon25	c.C2946T	p.D982D	.	.	.
PTCD3	55037	broad.mit.edu	36	2	86215524	86215524	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017952	exon21	c.A1681T	p.S561C	.	.	.
FGD5	152273	broad.mit.edu	36	3	14836360	14836360	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152536	exon1	c.G778T	p.A260S	.	.	.
FGD5	152273	broad.mit.edu	36	3	14836445	14836445	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152536	exon1	c.G863T	p.G288V	.	.	.
SMC4	10051	broad.mit.edu	36	3	161621336	161621336	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001002800	exon13	c.C1972T	p.L658F	.	.	.
DCLK3	85443	broad.mit.edu	36	3	36753805	36753805	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033403	exon2	c.G1350A	p.P450P	.	.	.
UBA7	7318	broad.mit.edu	36	3	49825524	49825525	+	Missense_Mutation	DNP	CC	AA	AA	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003335	exon4	c.441_442TT	.	.	.	.
DNASE1L3	1776	broad.mit.edu	36	3	58171628	58171628	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004944	exon3	c.C46T	p.H16Y	.	.	.
GRM7	2917	broad.mit.edu	36	3	7595629	7595629	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000844	exon8	c.G2036A	p.R679Q	.	.	.
BANK1	55024	broad.mit.edu	36	4	103010731	103010731	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017935	exon5	c.C810T	p.I270I	.	.	.
ZNF827	152485	broad.mit.edu	36	4	146990041	146990041	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_178835	exon6	c.C2104T	p.R702X	.	.	.
ADAM29	11086	broad.mit.edu	36	4	176133744	176133744	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001130705	exon3	c.G493A	p.G165R	.	.	.
ADAM29	11086	broad.mit.edu	36	4	176134459	176134459	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001130705	exon3	c.G1208A	p.G403D	.	.	.
AGA	175	broad.mit.edu	36	4	178596903	178596904	+	Missense_Mutation	DNP	TT	GA	GA	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	TT	TT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001171988	exon4	c.496_497TC	.	.	.	.
ATP10D	57205	broad.mit.edu	36	4	47254601	47254601	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020453	exon12	c.T1988C	p.F663S	.	.	.
UGT2B11	10720	broad.mit.edu	36	4	70114531	70114531	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001073	exon1	c.C499A	p.R167R	.	.	.
ANKRD17	26057	broad.mit.edu	36	4	74170024	74170024	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198889	exon29	c.T6212A	p.I2071N	.	.	.
APC	324	broad.mit.edu	36	5	112201816	112201816	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.C2572T	p.R858X	 APC,large_intestine,NS,Substitution - Nonsense,0 	.	.
APC	324	broad.mit.edu	36	5	112203310	112203310	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.G4066T	p.E1356X	 APC,pancreas,NS,Substitution - coding silent,-2 	.	.
PCDHB5	26167	broad.mit.edu	36	5	140496280	140496280	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015669	exon1	c.G1080A	p.P360P	.	.	.
PCDHB7	56129	broad.mit.edu	36	5	140534288	140534288	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018940	exon1	c.A1688T	p.Y563F	.	.	.
PCDHB13	56123	broad.mit.edu	36	5	140575893	140575893	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018933	exon1	c.C2014A	p.P672T	.	.	.
NDST1	3340	broad.mit.edu	36	5	149894638	149894638	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001543	exon5	c.C1113T	p.D371D	.	.	.
TULP4	56995	broad.mit.edu	36	6	158843740	158843741	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020245	exon13	c.3057_3058insG	p.P1019fs	.	.	.
C6orf174	387104	broad.mit.edu	36	6	127839014	127839014	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001012279	exon6	c.C1850T	p.A617V	.	.	.
GFOD1	54438	broad.mit.edu	36	6	13473658	13473659	+	Missense_Mutation	DNP	CC	TA	TA	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018988	exon2	c.468_469TA	.	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152684641	152684641	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033071	exon82	c.C15778A	p.Q5260K	.	.	.
BAT2	7916	broad.mit.edu	36	6	31703675	31703675	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004638	exon12	c.G1445A	p.R482H	.	.	.
GPR110	266977	broad.mit.edu	36	6	47085436	47085436	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153840	exon11	c.A1694C	p.H565P	.	.	.
METTL2B	55798	broad.mit.edu	36	7	127929153	127929153	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018396	exon9	c.C1084T	p.R362W	.	.	.
TRIM24	8805	broad.mit.edu	36	7	137920187	137920187	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003852	exon19	c.C3002T	p.P1001L	.	.	.
OR6V1	346517	broad.mit.edu	36	7	142459945	142459945	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001667	exon1	c.G386A	p.R129H	.	.	.
ACCN3	9311	broad.mit.edu	36	7	150377425	150377425	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020321	exon1	c.G520T	p.E174X	.	.	.
KLHL7	55975	broad.mit.edu	36	7	23112288	23112288	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001031710	exon1	c.C118T	p.Q40X	.	.	.
SDK1	221935	broad.mit.edu	36	7	4055517	4055518	+	Missense_Mutation	DNP	CC	AG	AG	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152744	exon18	c.2614_2615AG	.	.	.	.
PKD1L1	168507	broad.mit.edu	36	7	47938087	47938087	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138295	exon5	c.G490A	p.A164T	.	.	.
POM121	9883	broad.mit.edu	36	7	72051613	72051613	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_172020	exon13	c.G2350A	p.A784T	.	.	.
MGC26647	219557	broad.mit.edu	36	7	88261601	88261601	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152706	exon2	c.G592A	p.D198N	.	.	.
TRIM35	23087	broad.mit.edu	36	8	27201062	27201063	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_171982	exon6	c.1404_1405insG	p.G468fs	.	.	.
USP17L2	377630	broad.mit.edu	36	8	12032295	12032295	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_201402	exon1	c.A1384G	p.N462D	.	.	.
PHF20L1	51105	broad.mit.edu	36	8	133924149	133924149	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016018	exon19	c.G2595A	p.K865K	.	.	.
TG	7038	broad.mit.edu	36	8	133968313	133968313	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003235	exon9	c.G1514A	p.G505D	.	.	.
COL22A1	169044	broad.mit.edu	36	8	139675492	139675492	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152888	exon63	c.G4565A	p.R1522H	.	.	.
CYC1	1537	broad.mit.edu	36	8	145223336	145223336	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001916	exon4	c.G562A	p.A188T	.	.	.
WWP1	11059	broad.mit.edu	36	8	87520015	87520015	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_007013	exon17	c.C1835T	p.A612V	.	.	.
DCAF4L2	138009	broad.mit.edu	36	8	88954322	88954322	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152418	exon1	c.G994A	p.V332M	.	.	.
NEIL2	252969	broad.mit.edu	36	8	11680909	11680909	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001135748	exon5	c.369delC	p.Y123X	.	.	.
TMEM215	401498	broad.mit.edu	36	9	32774389	32774389	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_212558	exon2	c.C208A	p.P70T	.	.	.
C9orf23	138716	broad.mit.edu	36	9	34600866	34600866	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_148178	exon2	c.G428A	p.G143D	.	.	.
FBXO10	26267	broad.mit.edu	36	9	37527815	37527815	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012166	exon3	c.C711T	p.N237N	.	.	.
CLCN4	1183	broad.mit.edu	36	X	10148915	10148915	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001830	exon12	c.C2190T	p.S730S	.	.	.
SH2D1A	4068	broad.mit.edu	36	X	123308275	123308275	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001114937	exon1	c.C102T	p.S34S	.	.	.
PLCXD1	55344	broad.mit.edu	36	X	145423	145423	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018390	exon3	c.T151G	p.C51G	.	.	.
GABRQ	55879	broad.mit.edu	36	X	151572048	151572048	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018558	exon9	c.G1547C	p.G516A	.	.	.
L1CAM	3897	broad.mit.edu	36	X	152789576	152789576	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001143963	exon5	c.C542T	p.T181M	.	.	.
DMD	1756	broad.mit.edu	36	X	31406231	31406231	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004021	exon16	c.G1470A	p.L490L	.	.	.
NLGN4X	57502	broad.mit.edu	36	X	5831546	5831546	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020742	exon5	c.G1173A	p.T391T	.	.	.
FOXO4	4303	broad.mit.edu	36	X	70237478	70237478	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001170931	exon3	c.G508A	p.G170S	.	.	.
KIAA2022	340533	broad.mit.edu	36	X	73878572	73878572	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001008537	exon3	c.G2545A	p.E849K	.	.	.