Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
ANK3	288	hgsc.bcm.edu	36	10	61485433	61485434	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_020987	exon42	c.13054_13055insG	p.S4352fs	.	.	.
DUSP5	1847	hgsc.bcm.edu	36	10	112256739	112256739	+	Silent	SNP	C	C	G	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_004419	exon3	c.C585G	p.S195S	.	.	.
MCM10	55388	hgsc.bcm.edu	36	10	13257579	13257579	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_018518	exon6	c.G656A	p.R219Q	.	.	.
SPA17	53340	hgsc.bcm.edu	36	11	124050397	124050397	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_017425	exon2	c.C27T	p.H9H	.	.	.
BTBD10	84280	hgsc.bcm.edu	36	11	13399935	13399935	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_032320	exon3	c.G128T	p.G43V	.	.	.
ABCC8	6833	hgsc.bcm.edu	36	11	17382729	17382729	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_000352	exon28	c.G3463A	p.V1155I	.	.	.
STAB2	55576	hgsc.bcm.edu	36	12	102668600	102668600	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_017564	exon60	c.C6552T	p.D2184D	.	.	.
TAS2R13	50838	hgsc.bcm.edu	36	12	10952815	10952815	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_023920	exon1	c.C350T	p.P117L	.	.	.
TMEM132D	121256	hgsc.bcm.edu	36	12	128135051	128135051	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_133448	exon6	c.C1593T	p.S531S	.	.	.
PKP2	5318	hgsc.bcm.edu	36	12	32922484	32922484	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_004572	exon3	c.C597A	p.I199I	.	.	.
SACS	26278	hgsc.bcm.edu	36	13	22805183	22805183	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_014363	exon10	c.C10832A	p.A3611D	.	.	.
ZC3H13	23091	hgsc.bcm.edu	36	13	45447604	45447613	+	Frame_Shift_Del	DEL	CTCTCTCTCC	CTCTCTCTCC	-	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	CTCTCTCTCC	CTCTCTCTCC	CTCTCTCTCC	-	CTCTCTCTCC	CTCTCTCTCC	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_015070	exon12	c.2274_2283del	p.758_761del	.	.	.
NOVA1	4857	hgsc.bcm.edu	36	14	25987171	25987171	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_002515	exon5	c.C1358A	p.A453E	.	.	.
OR6S1	341799	hgsc.bcm.edu	36	14	20179594	20179595	+	Frame_Shift_Del	DEL	AC	AC	-	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	AC	AC	AC	-	AC	AC	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_001001968	exon1	c.96_97del	p.32_33del	.	.	.
IFI35	3430	hgsc.bcm.edu	36	17	38418613	38418613	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_005533	exon3	c.C144G	p.I48M	.	.	.
NPTX1	4884	hgsc.bcm.edu	36	17	76059256	76059256	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_002522	exon5	c.C1251T	p.Y417Y	.	.	.
RPTOR	57521	hgsc.bcm.edu	36	17	76296300	76296300	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_020761	exon4	c.G413A	p.R138H	.	.	.
SLC5A5	6528	hgsc.bcm.edu	36	19	17862745	17862745	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_000453	exon14	c.G1702A	p.A568T	.	.	.
APLP1	333	hgsc.bcm.edu	36	19	41054423	41054423	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_001024807	exon5	c.C607T	p.R203C	.	.	.
ZNF260	339324	hgsc.bcm.edu	36	19	41697700	41697700	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_001166037	exon3	c.A281G	p.Q94R	.	.	.
AXL	558	hgsc.bcm.edu	36	19	46454322	46454322	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_021913	exon18	c.T2162C	p.L721P	.	.	.
DKKL1	27120	hgsc.bcm.edu	36	19	54560885	54560885	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_001197302	exon4	c.G123A	p.E41E	.	.	.
KLK4	9622	hgsc.bcm.edu	36	19	56103549	56103549	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_004917	exon4	c.G490A	p.V164M	.	.	.
NLRP4	147945	hgsc.bcm.edu	36	19	61061270	61061270	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_134444	exon3	c.C699T	p.F233F	.	.	.
PIP5K1C	23396	hgsc.bcm.edu	36	19	3597020	3597020	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_001195733	exon11	c.G1297A	p.E433K	.	.	.
EXOSC10	5394	hgsc.bcm.edu	36	1	11070497	11070497	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_001001998	exon8	c.G892A	p.V298M	.	.	.
SPAG17	200162	hgsc.bcm.edu	36	1	118327971	118327971	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_206996	exon42	c.C5858T	p.S1953F	.	.	.
ITGA10	8515	hgsc.bcm.edu	36	1	144244866	144244866	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_003637	exon12	c.G1392A	p.Q464Q	.	.	.
POGZ	23126	hgsc.bcm.edu	36	1	149644749	149644749	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_145796	exon17	c.C3101A	p.S1034Y	.	.	.
EPHX1	2052	hgsc.bcm.edu	36	1	224093638	224093638	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_001136018	exon5	c.G690A	p.L230L	.	.	.
SLC35F3	148641	hgsc.bcm.edu	36	1	232518980	232518980	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_173508	exon5	c.G838A	p.A280T	.	.	.
C8B	732	hgsc.bcm.edu	36	1	57195099	57195099	+	Missense_Mutation	SNP	C	C	T	rs12067507	byCluster;byFrequency;byHapMap	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_000066	exon3	c.G322A	p.E108K	.	.	.
PCSK2	5126	hgsc.bcm.edu	36	20	17155954	17155954	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_002594	exon1	c.A4G	p.K2E	.	.	.
SLC12A5	57468	hgsc.bcm.edu	36	20	44110074	44110074	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_020708	exon16	c.C1955T	p.A652V	.	.	.
FAM65C	140876	hgsc.bcm.edu	36	20	48665978	48665978	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_080829	exon4	c.C304T	p.R102C	.	.	.
MYT1	4661	hgsc.bcm.edu	36	20	62309919	62309919	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_004535	exon7	c.C926T	p.P309L	.	.	.
ARHGAP15	55843	hgsc.bcm.edu	36	2	143724621	143724621	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_018460	exon6	c.C456A	p.S152R	.	.	.
TNFAIP6	7130	hgsc.bcm.edu	36	2	151934850	151934850	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_007115	exon4	c.C465T	p.Y155Y	.	.	.
TTN	7273	hgsc.bcm.edu	36	2	179319884	179319884	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_133379	exon46	c.G15488A	p.R5163H	.	.	.
CALCRL	10203	hgsc.bcm.edu	36	2	187925229	187925229	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_005795	exon13	c.A985C	p.N329H	.	.	.
COL6A3	1293	hgsc.bcm.edu	36	2	237923539	237923539	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_057166	exon25	c.G5048A	p.R1683H	.	.	.
TXNDC6	347736	hgsc.bcm.edu	36	3	139519724	139519724	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_178130	exon6	c.G157A	p.E53K	.	.	.
SERPINI1	5274	hgsc.bcm.edu	36	3	168989656	168989656	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_001122752	exon2	c.G46T	p.A16S	.	.	.
RAD18	56852	hgsc.bcm.edu	36	3	8963905	8963905	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_020165	exon4	c.C265T	p.R89W	.	.	.
NDST3	9348	hgsc.bcm.edu	36	4	119373680	119373680	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_004784	exon9	c.A1885C	p.K629Q	.	.	.
FBXW7	55294	hgsc.bcm.edu	36	4	153466739	153466739	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_018315	exon9	c.C1273G	p.R425G	 FBXW7,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.
DDX60	55601	hgsc.bcm.edu	36	4	169451538	169451538	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_017631	exon7	c.C857G	p.S286C	.	.	.
HELQ	113510	hgsc.bcm.edu	36	4	84595679	84595679	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_133636	exon1	c.G192A	p.Q64Q	.	.	.
APC	324	hgsc.bcm.edu	36	5	112190733	112190733	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_001127511	exon10	c.C1384T	p.Q462X	.	.	.
EGR1	1958	hgsc.bcm.edu	36	5	137831477	137831477	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_001964	exon2	c.G1440A	p.S480S	.	.	.
PCDHB6	56130	hgsc.bcm.edu	36	5	140510493	140510493	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_018939	exon1	c.C471T	p.H157H	.	.	.
TUBE1	51175	hgsc.bcm.edu	36	6	112499814	112499814	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_016262	exon11	c.G1253A	p.R418K	.	.	.
TRMT11	60487	hgsc.bcm.edu	36	6	126361134	126361134	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_001031712	exon5	c.G367A	p.E123K	.	.	.
IL22RA2	116379	hgsc.bcm.edu	36	6	137517826	137517826	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_181310	exon4	c.G321A	p.S107S	.	.	.
SYNE1	23345	hgsc.bcm.edu	36	6	152847740	152847740	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_033071	exon13	c.C1129T	p.Q377X	.	.	.
TMEM63B	55362	hgsc.bcm.edu	36	6	44215251	44215251	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_018426	exon7	c.C477T	p.I159I	.	.	.
PKHD1	5314	hgsc.bcm.edu	36	6	51998368	51998368	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_170724	exon32	c.C4199T	p.S1400L	.	.	.
HTR1E	3354	hgsc.bcm.edu	36	6	87782382	87782382	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_000865	exon2	c.G611A	p.R204Q	.	.	.
STRA8	346673	hgsc.bcm.edu	36	7	134578074	134578074	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_182489	exon3	c.G260A	p.W87X	.	.	.
ADCY1	107	hgsc.bcm.edu	36	7	45692301	45692301	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_021116	exon13	c.C2289T	p.Y763Y	.	.	.
IGFBP3	3486	hgsc.bcm.edu	36	7	45922739	45922739	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_000598	exon3	c.A683G	p.N228S	.	.	.
CYP3A7	1551	hgsc.bcm.edu	36	7	99166623	99166623	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_000765	exon2	c.C160T	p.R54C	.	.	.
TRIM55	84675	hgsc.bcm.edu	36	8	67229037	67229037	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_184085	exon9	c.C1438T	p.R480W	.	.	.
DNM1	1759	hgsc.bcm.edu	36	9	130050688	130050688	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_001005336	exon18	c.C1910T	p.A637V	.	.	.
SLC24A2	25769	hgsc.bcm.edu	36	9	19776271	19776271	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_020344	exon2	c.C594T	p.I198I	.	.	.
ZNF658	26149	hgsc.bcm.edu	36	9	40764157	40764157	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_033160	exon5	c.G1118T	p.R373I	.	.	.
PTPRD	5789	hgsc.bcm.edu	36	9	8489754	8489754	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_002839	exon25	c.A2215C	p.K739Q	.	.	.
ZNF484	83744	hgsc.bcm.edu	36	9	94648725	94648725	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_001007101	exon4	c.G2057A	p.C686Y	.	.	.
KLHL13	90293	hgsc.bcm.edu	36	X	116927353	116927353	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_001168300	exon5	c.C1287G	p.H429Q	.	.	.
RHOXF1	158800	hgsc.bcm.edu	36	X	119127218	119127218	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_139282	exon3	c.G515T	p.R172L	.	.	.
GPR112	139378	hgsc.bcm.edu	36	X	135257299	135257299	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_153834	exon6	c.C3768T	p.S1256S	.	.	.
TMEM185A	84548	hgsc.bcm.edu	36	X	148500850	148500850	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_032508	exon2	c.C136T	p.P46S	.	.	.
KLHL15	80311	hgsc.bcm.edu	36	X	23934712	23934712	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_030624	exon3	c.G20C	p.G7A	.	.	.
SUV39H1	6839	hgsc.bcm.edu	36	X	48449608	48449608	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_003173	exon4	c.C837T	p.T279T	.	.	.
KLF8	11279	hgsc.bcm.edu	36	X	56327611	56327611	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_007250	exon6	c.G1039C	p.D347H	.	.	.
ARHGEF9	23229	hgsc.bcm.edu	36	X	62774688	62774688	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_001173480	exon9	c.G1190A	p.R397H	.	.	.
ATRX	546	hgsc.bcm.edu	36	X	76825092	76825092	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_000489	exon9	c.C2312T	p.A771V	.	.	.
TBX22	50945	hgsc.bcm.edu	36	X	79165274	79165274	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	0f13bb22-c1bd-416c-aa24-59c4ba93719f	8879a9f0-e07c-49d9-be6f-2dba62db04b1	NM_001109878	exon3	c.G235A	p.G79S	.	.	.