Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
C10orf81	79949	hgsc.bcm.edu	36	10	115524009	115524009	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_001193435	exon7	c.G442T	p.E148X	.	.	.
MCM10	55388	hgsc.bcm.edu	36	10	13253002	13253002	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_018518	exon3	c.G82A	p.E28K	.	.	.
ARHGAP21	57584	hgsc.bcm.edu	36	10	24949917	24949917	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_020824	exon9	c.G913A	p.V305M	.	.	.
ASAH2B	653308	hgsc.bcm.edu	36	10	52182235	52182235	+	Missense_Mutation	SNP	C	C	A	rs2813341	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_001079516	exon5	c.C221A	p.T74N	.	.	.
PIK3AP1	118788	hgsc.bcm.edu	36	10	98402526	98402526	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_152309	exon4	c.G631T	p.E211X	.	.	.
PSMD13	5719	hgsc.bcm.edu	36	11	234167	234167	+	Silent	SNP	C	C	T	rs1128320	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_002817	exon4	c.C216T	p.N72N	.	.	.
TUB	7275	hgsc.bcm.edu	36	11	8017062	8017062	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_003320	exon1	c.C66T	p.F22F	.	.	.
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_004985	exon2	c.G35A	p.G12D	 KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.
NRXN3	9369	hgsc.bcm.edu	36	14	78245393	78245393	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_004796	exon4	c.C183T	p.G61G	.	.	.
FLRT2	23768	hgsc.bcm.edu	36	14	85157745	85157745	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_013231	exon2	c.A134G	p.N45S	.	.	.
FLRT2	23768	hgsc.bcm.edu	36	14	85158199	85158199	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_013231	exon2	c.C588T	p.S196S	.	.	.
FAM181A	90050	hgsc.bcm.edu	36	14	93464433	93464433	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_138344	exon3	c.G235A	p.A79T	.	.	.
SLFN13	146857	hgsc.bcm.edu	36	17	30793357	30793357	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_144682	exon5	c.T1260C	p.H420H	.	.	.
ARSG	22901	hgsc.bcm.edu	36	17	63851504	63851504	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_014960	exon3	c.C383T	p.A128V	.	.	.
TP53	7157	hgsc.bcm.edu	36	17	7518938	7518939	+	Frame_Shift_Del	DEL	AA	AA	-	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	AA	AA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_001126114	exon6	c.635_636del	p.212_212del	.	.	.
ESCO1	114799	hgsc.bcm.edu	36	18	17408231	17408231	+	Missense_Mutation	SNP	T	T	C	rs35087820	byCluster;byFrequency	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_052911	exon4	c.A572G	p.N191S	.	.	.
TSHZ3	57616	hgsc.bcm.edu	36	19	36460068	36460068	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_020856	exon2	c.C2471T	p.T824M	.	.	.
TSHZ3	57616	hgsc.bcm.edu	36	19	36461937	36461937	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_020856	exon2	c.G602T	p.S201I	.	.	.
FBN3	84467	hgsc.bcm.edu	36	19	8067801	8067801	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_032447	exon42	c.C5377T	p.R1793X	.	.	.
C1orf107	27042	hgsc.bcm.edu	36	1	208076805	208076805	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_014388	exon6	c.T688C	p.F230L	.	.	.
USH2A	7399	hgsc.bcm.edu	36	1	213915479	213915479	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_206933	exon63	c.G12397T	p.E4133X	.	.	.
USP48	84196	hgsc.bcm.edu	36	1	21952086	21952086	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_001032730	exon4	c.A526G	p.T176A	.	.	.
TINAGL1	64129	hgsc.bcm.edu	36	1	31823119	31823119	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_022164	exon7	c.C752T	p.T251M	.	.	.
LRRC7	57554	hgsc.bcm.edu	36	1	70076519	70076519	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_020794	exon5	c.G498A	p.L166L	.	.	.
ROR1	4919	hgsc.bcm.edu	36	1	64416013	64416013	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_005012	exon9	c.A1701G	p.R567R	 ROR1,large_intestine,NS,Substitution - Missense,+1 	.	.
EHD3	30845	hgsc.bcm.edu	36	2	31311132	31311132	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_014600	exon1	c.G141A	p.S47S	.	.	.
C2orf42	54980	hgsc.bcm.edu	36	2	70260260	70260260	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_017880	exon4	c.T842C	p.V281A	.	.	.
REG3A	5068	hgsc.bcm.edu	36	2	79239060	79239060	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_002580	exon4	c.C233T	p.S78F	.	.	.
RUVBL1	8607	hgsc.bcm.edu	36	3	129282905	129282905	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_003707	exon11	c.G1249C	p.A417P	.	.	.
PCCB	5096	hgsc.bcm.edu	36	3	137531479	137531479	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_001178014	exon16	c.G1601A	p.R534Q	.	.	.
C3orf19	51244	hgsc.bcm.edu	36	3	14684022	14684022	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_016474	exon8	c.G812A	p.R271H	.	.	.
GALNTL2	117248	hgsc.bcm.edu	36	3	16239186	16239186	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_054110	exon9	c.G1690T	p.A564S	.	.	.
TMEM42	131616	hgsc.bcm.edu	36	3	44881652	44881652	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_144638	exon3	c.G456T	p.K152N	.	.	.
CCR3	1232	hgsc.bcm.edu	36	3	46282336	46282336	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_178328	exon3	c.G746C	p.R249T	.	.	.
NME6	10201	hgsc.bcm.edu	36	3	48311647	48311647	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_005793	exon5	c.C340T	p.R114X	.	.	.
MAGI1	9223	hgsc.bcm.edu	36	3	65431197	65431197	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_015520	exon5	c.G760A	p.D254N	.	.	.
ELMOD2	255520	hgsc.bcm.edu	36	4	141680794	141680794	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_153702	exon6	c.C422T	p.T141M	.	.	.
FBXW7	55294	hgsc.bcm.edu	36	4	153466739	153466739	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_018315	exon9	c.C1273T	p.R425C	 FBXW7,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.
SLIT2	9353	hgsc.bcm.edu	36	4	19867425	19867425	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_004787	exon2	c.C212T	p.T71M	.	.	.
SPATA18	132671	hgsc.bcm.edu	36	4	52621710	52621710	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_145263	exon3	c.C199T	p.R67C	.	.	.
C5orf51	285636	hgsc.bcm.edu	36	5	41953039	41953039	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_175921	exon6	c.G766A	p.V256I	.	.	.
HIST1H4B	8366	hgsc.bcm.edu	36	6	26135364	26135364	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_003544	exon1	c.A96G	p.K32K	.	.	.
PGK2	5232	hgsc.bcm.edu	36	6	49861750	49861750	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_138733	exon1	c.T1110C	p.V370V	.	.	.
IL17A	3605	hgsc.bcm.edu	36	6	52161865	52161865	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_002190	exon3	c.G284A	p.R95H	.	.	.
SVOPL	136306	hgsc.bcm.edu	36	7	137963556	137963556	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_174959	exon7	c.C500T	p.A167V	.	.	.
SDK1	221935	hgsc.bcm.edu	36	7	3975495	3975495	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_152744	exon11	c.G1627A	p.V543I	.	.	.
TBRG4	9238	hgsc.bcm.edu	36	7	45110334	45110334	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_004749	exon5	c.C954A	p.T318T	.	.	.
STYXL1	51657	hgsc.bcm.edu	36	7	75481096	75481096	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_016086	exon5	c.G353A	p.R118H	.	.	.
DLC1	10395	hgsc.bcm.edu	36	8	12988219	12988219	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_182643	exon17	c.T4417A	p.C1473S	.	.	.
KCNQ3	3786	hgsc.bcm.edu	36	8	133265705	133265705	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_004519	exon3	c.G569A	p.R190Q	.	.	.
C9orf79	286234	hgsc.bcm.edu	36	9	89690811	89690811	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_178828	exon4	c.C1589A	p.P530H	.	.	.
ODZ1	10178	hgsc.bcm.edu	36	X	123342739	123342739	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_014253	exon31	c.T7506G	p.N2502K	.	.	.
ODZ1	10178	hgsc.bcm.edu	36	X	123525283	123525283	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_014253	exon13	c.C2284T	p.R762X	.	.	.
ATP2B3	492	hgsc.bcm.edu	36	X	152498795	152498795	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_001001344	exon20	c.C3508T	p.R1170C	.	.	.
PHEX	5251	hgsc.bcm.edu	36	X	22149779	22149779	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_000444	exon18	c.A1897C	p.N633H	.	.	.
DMD	1756	hgsc.bcm.edu	36	X	32145100	32145100	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_004011	exon16	c.C2269T	p.R757X	.	.	.
FAM47B	170062	hgsc.bcm.edu	36	X	34872685	34872685	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_152631	exon1	c.G1816A	p.V606I	.	.	.
CLCN5	1184	hgsc.bcm.edu	36	X	49742122	49742122	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_001127899	exon14	c.G2199A	p.T733T	.	.	.
IQSEC2	23096	hgsc.bcm.edu	36	X	53300673	53300673	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_001111125	exon4	c.C1165T	p.R389W	.	.	.
ALAS2	212	hgsc.bcm.edu	36	X	55056695	55056695	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_001037967	exon9	c.C1438T	p.R480C	.	.	.
ZCCHC13	389874	hgsc.bcm.edu	36	X	73441054	73441054	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	85cd1ea4-713a-4360-8ce1-b53d1e298a8b	252ec077-2c29-4988-83e7-8ef13dedc952	NM_203303	exon1	c.C228T	p.I76I	.	.	.