Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target CDH23 64072 broad.mit.edu 36 10 73237460 73237460 + Silent SNP G A A novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001171933 exon12 c.G1770A p.Q590Q . . . C10orf12 26148 broad.mit.edu 36 10 98733364 98733364 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015652 exon1 c.G2227A p.D743N . . . CADM1 23705 broad.mit.edu 36 11 114552475 114552475 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_014333 exon10 c.G1258A p.A420T . . . MAPK8IP1 9479 broad.mit.edu 36 11 45883286 45883286 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_005456 exon11 c.G1973A p.G658E . . . HNRNPUL2 221092 broad.mit.edu 36 11 62246412 62246412 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001079559 exon7 c.A1112C p.E371A . . . KCTD21 283219 broad.mit.edu 36 11 77562618 77562618 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001029859 exon2 c.G631C p.V211L . . . KAT5 10524 broad.mit.edu 36 11 65236444 65236444 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_182710 exon1 c.130delT p.C44fs . . . TMBIM4 51643 broad.mit.edu 36 12 64827984 64827984 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_016056 exon4 c.T317C p.L106P . . . SYNE2 23224 broad.mit.edu 36 14 63584526 63584526 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015180 exon46 c.G7277A p.S2426N . . . OR4F15 390649 broad.mit.edu 36 15 100176822 100176822 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001001674 exon1 c.C910T p.R304C . . . GABRA5 2558 broad.mit.edu 36 15 24776053 24776053 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 C C C G C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001165037 exon11 c.C1316G p.T439S . . . RYR3 6263 broad.mit.edu 36 15 31646228 31646228 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001036 exon12 c.C1204T p.R402C . . . SNX33 257364 broad.mit.edu 36 15 73729295 73729295 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_153271 exon1 c.G797A p.R266H . . . N4BP1 9683 broad.mit.edu 36 16 47152886 47152886 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_153029 exon2 c.G1169A p.R390K . . . CTCF 10664 broad.mit.edu 36 16 66218108 66218108 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001191022 exon6 c.G523T p.A175S . . . GPR142 350383 broad.mit.edu 36 17 69879512 69879512 + Silent SNP G A A novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_181790 exon4 c.G567A p.R189R . . . TP53 7157 broad.mit.edu 36 17 7517819 7517819 + Missense_Mutation SNP G A A rs28934574 unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001126114 exon8 c.C844T p.R282W TP53,central_nervous_system,brain,Substitution - Missense,-2 . . CCDC40 55036 broad.mit.edu 36 17 75670032 75670032 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_017950 exon11 c.C1655T p.A552V . . . C17orf68 80169 broad.mit.edu 36 17 8078588 8078588 + Silent SNP C T T novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_025099 exon10 c.G1728A p.P576P . . . SETBP1 26040 broad.mit.edu 36 18 40785269 40785269 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 G G G C G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_015559 exon4 c.G1966C p.G656R . . . CRTC1 23373 broad.mit.edu 36 19 18717738 18717738 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_015321 exon3 c.C349T p.R117W . . . ZNF493 284443 broad.mit.edu 36 19 21398403 21398403 + Nonsense_Mutation SNP A T T novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_175910 exon2 c.A718T p.K240X . . . KHSRP 8570 broad.mit.edu 36 19 6369853 6369853 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_003685 exon8 c.C640T p.R214W . . . GPR61 83873 broad.mit.edu 36 1 109887489 109887489 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_031936 exon2 c.G322A p.A108T . . . EXOSC10 5394 broad.mit.edu 36 1 11080668 11080668 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001001998 exon2 c.C244T p.Q82X . . . SETDB1 9869 broad.mit.edu 36 1 149190184 149190184 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001145415 exon13 c.G2207A p.R736Q . . . LMX1A 4009 broad.mit.edu 36 1 163441851 163441851 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_177398 exon8 c.A862G p.N288D . . . FMO1 2326 broad.mit.edu 36 1 169517784 169517784 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_002021 exon7 c.C871T p.R291C . . . MUL1 79594 broad.mit.edu 36 1 20699844 20699844 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_024544 exon4 c.G985A p.A329T . . . SYT14 255928 broad.mit.edu 36 1 208261178 208261178 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_153262 exon4 c.C398T p.S133L . . . EBNA1BP2 10969 broad.mit.edu 36 1 43410362 43410362 + Silent SNP C T T novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006824 exon1 c.G15A p.P5P . . . TNNI3K 51086 broad.mit.edu 36 1 74574314 74574314 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001199327 exon9 c.A878C p.D293A . . . DRAM2 128338 broad.mit.edu 36 1 111475616 111475616 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 A A A - A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_178454 exon3 c.84delT p.I28fs . . . CPXM1 56265 broad.mit.edu 36 20 2725982 2725982 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001184699 exon6 c.C688A p.P230T . . . ZHX3 23051 broad.mit.edu 36 20 39265779 39265779 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_015035 exon3 c.A1192G p.S398G . . . A4GALT 53947 broad.mit.edu 36 22 41419247 41419247 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_017436 exon3 c.G655A p.A219T . . . PLGLB2 5342 broad.mit.edu 36 2 87839650 87839651 + Splice_Site INS - T T novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . TTN 7273 broad.mit.edu 36 2 179348597 179348597 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_133379 exon28 c.T6239A p.I2080N . . . C2orf18 54978 broad.mit.edu 36 2 26851925 26851925 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_017877 exon4 c.C412T p.R138W . . . FBXO11 80204 broad.mit.edu 36 2 47899672 47899672 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001190274 exon15 c.C1847G p.T616S . . . KLRAQ1 129285 broad.mit.edu 36 2 48567284 48567284 + Silent SNP A G G novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001135629 exon14 c.A1329G p.K443K . . . DOCK10 55619 broad.mit.edu 36 2 225447230 225447231 + Frame_Shift_Del DEL TA - - novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 TA TA TA - TA TA Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_014689 exon10 c.1097_1098del p.366_366del . . . C3orf26 84319 broad.mit.edu 36 3 101377884 101377884 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001167924 exon9 c.A637C p.K213Q . . . ACAD11 84129 broad.mit.edu 36 3 133844287 133844287 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032169 exon3 c.C299A p.P100H . . . EIF4A2 1974 broad.mit.edu 36 3 187989684 187989684 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001967 exon11 c.C1156A p.R386S . . . GPD1L 23171 broad.mit.edu 36 3 32144611 32144611 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 G G G C G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_015141 exon2 c.G87C p.K29N . . . GPD1L 23171 broad.mit.edu 36 3 32175404 32175404 + Silent SNP C T T novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015141 exon6 c.C651T p.D217D . . . AADAC 13 broad.mit.edu 36 3 153028208 153028208 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001086 exon5 c.758delA p.Y253fs . . . PHF17 79960 broad.mit.edu 36 4 130008517 130008517 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 C C C G C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_199320 exon10 c.C1560G p.C520W . . . ENPP6 133121 broad.mit.edu 36 4 185275141 185275141 + Silent SNP C T T novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_153343 exon5 c.G717A p.S239S . . . RGS12 6002 broad.mit.edu 36 4 3287800 3287800 + Silent SNP G A A novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002926 exon2 c.G105A p.T35T . . . APC 324 broad.mit.edu 36 5 112192515 112192515 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001127511 exon12 c.C1636T p.R546X APC,large_intestine,NS,Substitution - Nonsense,0 . . CEP120 153241 broad.mit.edu 36 5 122782074 122782074 + Silent SNP A C C novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001166226 exon2 c.T6G p.L2L . . . PCDHB9 56127 broad.mit.edu 36 5 140549232 140549232 + Silent SNP G A A novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_019119 exon1 c.G2156A p.R719Q . . . PCDHGA5 56110 broad.mit.edu 36 5 140724773 140724773 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_032054 exon1 c.C692T p.T231M . . . RAI14 26064 broad.mit.edu 36 5 34859642 34859642 + Silent SNP C T T novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001145522 exon14 c.C1851T p.S617S . . . HCN1 348980 broad.mit.edu 36 5 45339554 45339554 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_021072 exon6 c.G1522A p.V508M . . . ZFYVE16 9765 broad.mit.edu 36 5 79774784 79774784 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001105251 exon6 c.C2506T p.Q836X . . . APC 324 broad.mit.edu 36 5 112203389 112203389 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001127511 exon14 c.4145delC p.S1382X APC,large_intestine,colon,Substitution - Nonsense,0 . . HSPA1B 3304 broad.mit.edu 36 6 31903818 31903819 + Frame_Shift_Ins INS - C C novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005346 exon1 c.112_113insC p.T38fs . . . DST 667 broad.mit.edu 36 6 56588986 56588986 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001723 exon24 c.A7238G p.D2413G . . . C7orf50 84310 broad.mit.edu 36 7 1003836 1003837 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032350 exon5 c.536_537insC p.L179fs . . . NUP205 23165 broad.mit.edu 36 7 134914116 134914116 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 C C C G C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_015135 exon7 c.C955G p.L319V . . . ABCA13 154664 broad.mit.edu 36 7 48420688 48420688 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_152701 exon38 c.C11933A p.T3978N . . . CDK14 5218 broad.mit.edu 36 7 90193817 90193817 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_012395 exon2 c.A70T p.I24L . . . VPS13B 157680 broad.mit.edu 36 8 100184431 100184431 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_152564 exon5 c.G487T p.V163F . . . BLK 640 broad.mit.edu 36 8 11438244 11438244 + Silent SNP C T T novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001715 exon2 c.C102T p.D34D . . . TAF1L 138474 broad.mit.edu 36 9 32622736 32622736 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_153809 exon1 c.G2842A p.A948T . . . NXF5 55998 broad.mit.edu 36 X 100979244 100979244 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_032946 exon15 c.C958T p.R320X . . . MUM1L1 139221 broad.mit.edu 36 X 105337231 105337231 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_152423 exon5 c.C1150T p.H384Y . . . ZCCHC12 170261 broad.mit.edu 36 X 117843543 117843543 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_173798 exon4 c.C308T p.A103V . . . CSF2RA 1438 broad.mit.edu 36 X 1367701 1367701 + Silent SNP G A A novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_172245 exon6 c.G393A p.A131A . . . ZFX 7543 broad.mit.edu 36 X 24138523 24138523 + Silent SNP G A A novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001178086 exon6 c.G840A p.V280V . . . WNK3 65267 broad.mit.edu 36 X 54299038 54299038 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3667-01A-01W-0900-09 TCGA-AA-3667-10A-01W-0900-09 G G G C G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001002838 exon12 c.C2110G p.Q704E . . .