Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
ITPRIP	85450	broad.mit.edu	36	10	106064362	106064362	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033397	exon3	c.G1438A	p.G480S	.	.	.
ADAMTS14	140766	broad.mit.edu	36	10	72159919	72159919	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_080722	exon6	c.G1010A	p.R337H	.	.	.
GRIA4	2893	broad.mit.edu	36	11	105302769	105302769	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001077243	exon13	c.C1940T	p.T647M	.	.	.
CDON	50937	broad.mit.edu	36	11	125381156	125381156	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016952	exon9	c.T1559C	p.F520S	.	.	.
HBD	3045	broad.mit.edu	36	11	5211857	5211857	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000519	exon2	c.T255G	p.T85T	.	.	.
CCKBR	887	broad.mit.edu	36	11	6248554	6248554	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_176875	exon4	c.C756T	p.D252D	.	.	.
ATM	472	broad.mit.edu	36	11	107705141	107705141	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000051	exon49	c.7273delG	p.G2425fs	.	.	.
POLE	5426	broad.mit.edu	36	12	131728430	131728430	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006231	exon39	c.G5254A	p.D1752N	.	.	.
AMIGO2	347902	broad.mit.edu	36	12	45757724	45757724	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_181847	exon2	c.G1329A	p.S443S	.	.	.
C12orf54	121273	broad.mit.edu	36	12	47166775	47166775	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152319	exon4	c.A134T	p.Q45L	.	.	.
LEMD3	23592	broad.mit.edu	36	12	63926331	63926331	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014319	exon13	c.C2695T	p.R899C	.	.	.
ATN1	1822	broad.mit.edu	36	12	6915403	6915403	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001007026	exon5	c.G712C	p.G238R	.	.	.
SLC6A15	55117	broad.mit.edu	36	12	83781483	83781483	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_182767	exon11	c.G1684A	p.G562S	.	.	.
AQP9	366	broad.mit.edu	36	15	56246281	56246281	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020980	exon2	c.G229A	p.G77S	.	.	.
NR2F2	7026	broad.mit.edu	36	15	94678777	94678777	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001145155	exon2	c.C512T	p.A171V	.	.	.
ZNF423	23090	broad.mit.edu	36	16	48229372	48229372	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015069	exon5	c.C1192T	p.R398W	.	.	.
SALL1	6299	broad.mit.edu	36	16	49730839	49730839	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002968	exon2	c.C2795A	p.S932Y	.	.	.
FTO	79068	broad.mit.edu	36	16	52417711	52417711	+	Silent	SNP	C	T	T	rs45492996	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080432	exon3	c.C558T	p.N186N	.	.	.
DHX38	9785	broad.mit.edu	36	16	70694514	70694514	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014003	exon12	c.G1540A	p.E514K	.	.	.
FANCA	2175	broad.mit.edu	36	16	88336720	88336720	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000135	exon37	c.G3754A	p.E1252K	.	.	.
KSR1	8844	broad.mit.edu	36	17	22934142	22934143	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014238	exon5	c.453_454insC	p.T151fs	.	.	.
SDK2	54549	broad.mit.edu	36	17	68939307	68939307	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001144952	exon11	c.C1409T	p.A470V	.	.	.
ZNF532	55205	broad.mit.edu	36	18	54738686	54738686	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018181	exon4	c.G2187A	p.S729S	.	.	.
CACNA1A	773	broad.mit.edu	36	19	13306248	13306248	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001174080	exon8	c.G1142A	p.R381Q	.	.	.
ZNF430	80264	broad.mit.edu	36	19	21031455	21031455	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001172671	exon5	c.G498C	p.Q166H	.	.	.
CLCNKB	1188	broad.mit.edu	36	1	16251441	16251441	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001165945	exon8	c.G1063A	p.V355I	.	.	.
CFH	3075	broad.mit.edu	36	1	194962284	194962284	+	Silent	SNP	G	A	A	rs56035657	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000186	exon13	c.G1935A	p.T645T	.	.	.
SOAT1	6646	broad.mit.edu	36	1	177575305	177575305	+	Splice_Site	SNP	T	C	C	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ITPA	3704	broad.mit.edu	36	20	3152085	3152085	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033453	exon8	c.T562G	p.Y188D	.	.	.
SLC4A11	83959	broad.mit.edu	36	20	3159400	3159400	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001174090	exon11	c.G1389A	p.A463A	.	.	.
MYBL2	4605	broad.mit.edu	36	20	41778017	41778017	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002466	exon14	c.C1979T	p.S660F	.	.	.
SDC4	6385	broad.mit.edu	36	20	43397882	43397882	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002999	exon2	c.C153T	p.P51P	.	.	.
ZNF334	55713	broad.mit.edu	36	20	44563964	44563964	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018102	exon5	c.C1421A	p.S474X	.	.	.
PHACTR3	116154	broad.mit.edu	36	20	57814627	57814627	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_080672	exon8	c.C1311T	p.I437I	.	.	.
DSCAM	1826	broad.mit.edu	36	21	40481011	40481011	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001389	exon14	c.G2696A	p.R899H	.	.	.
ZC3H7B	23264	broad.mit.edu	36	22	40058213	40058214	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	.	.	.	.	.	.	.
LARGE	9215	broad.mit.edu	36	22	32000427	32000427	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_133642	exon15	c.G2257A	p.E753K	.	.	.
FBLN1	2192	broad.mit.edu	36	22	44349078	44349078	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006486	exon15	c.C1721T	p.T574M	.	.	.
NCKAP5	344148	broad.mit.edu	36	2	133264097	133264097	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_207481	exon13	c.C1061T	p.T354M	.	.	.
WDSUB1	151525	broad.mit.edu	36	2	159847750	159847750	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152528	exon2	c.C77T	p.A26V	.	.	.
ZDBF2	57683	broad.mit.edu	36	2	206883915	206883915	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020923	exon5	c.C6418T	p.L2140F	.	.	.
SCLY	51540	broad.mit.edu	36	2	238655090	238655090	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016510	exon5	c.G486A	p.A162A	.	.	.
HEATR5B	54497	broad.mit.edu	36	2	37087930	37087930	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_019024	exon29	c.A4544T	p.E1515V	.	.	.
PSME4	23198	broad.mit.edu	36	2	53954996	53954996	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014614	exon43	c.A5084T	p.E1695V	.	.	.
REG1B	5968	broad.mit.edu	36	2	79167448	79167448	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006507	exon3	c.G181T	p.D61Y	.	.	.
CCRL1	51554	broad.mit.edu	36	3	133802494	133802494	+	Missense_Mutation	SNP	T	C	C	rs9403005	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178445	exon1	c.T563C	p.F188S	.	.	.
STAG1	10274	broad.mit.edu	36	3	137743703	137743703	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005862	exon6	c.G419A	p.R140Q	.	.	.
SCN11A	11280	broad.mit.edu	36	3	38883902	38883902	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014139	exon23	c.G3865A	p.V1289I	.	.	.
CCBP2	1238	broad.mit.edu	36	3	42881018	42881018	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001296	exon3	c.C20T	p.P7L	.	.	.
SHISA5	51246	broad.mit.edu	36	3	48513727	48513727	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016479	exon2	c.G80A	p.R27H	.	.	.
IFRD2	7866	broad.mit.edu	36	3	50300923	50300923	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006764	exon11	c.G1361A	p.R454H	.	.	.
TLR9	54106	broad.mit.edu	36	3	52232616	52232616	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017442	exon2	c.C756T	p.G252G	.	.	.
TACR3	6870	broad.mit.edu	36	4	104860039	104860039	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001059	exon1	c.G243A	p.P81P	.	.	.
STBD1	8987	broad.mit.edu	36	4	77450010	77450010	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003943	exon2	c.G910A	p.D304N	.	.	.
CDC25C	995	broad.mit.edu	36	5	137650768	137650768	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001790	exon11	c.G1015A	p.G339R	.	.	.
PCDHB5	26167	broad.mit.edu	36	5	140496933	140496933	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015669	exon1	c.C1733T	p.A578V	.	.	.
PCDHGA7	56108	broad.mit.edu	36	5	140743054	140743054	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032087	exon1	c.C404T	p.T135M	.	.	.
ODZ2	57451	broad.mit.edu	36	5	167421798	167421798	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001122679	exon7	c.G1465A	p.A489T	.	.	.
SLIT3	6586	broad.mit.edu	36	5	168113479	168113479	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003062	exon17	c.C1797T	p.R599R	.	.	.
DAB2	1601	broad.mit.edu	36	5	39430137	39430137	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001343	exon2	c.G43A	p.D15N	.	.	.
RHOBTB3	22836	broad.mit.edu	36	5	95150305	95150305	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014899	exon11	c.T1707G	p.F569L	.	.	.
APC	324	broad.mit.edu	36	5	112203122	112203123	+	Frame_Shift_Del	DEL	TT	-	-	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	TT	TT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.3878_3879del	p.1293_1293del	.	.	.
SLC35F1	222553	broad.mit.edu	36	6	118694911	118694911	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001029858	exon4	c.C538T	p.R180W	.	.	.
HIST1H2BG	8339	broad.mit.edu	36	6	26324614	26324614	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003518	exon1	c.C237T	p.S79S	.	.	.
MUC21	394263	broad.mit.edu	36	6	31062689	31062689	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001010909	exon2	c.G758A	p.G253D	.	.	.
RIPPLY2	134701	broad.mit.edu	36	6	84623817	84623817	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001009994	exon4	c.G377C	p.C126S	.	.	.
DNAH11	8701	broad.mit.edu	36	7	21623838	21623838	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003777	exon23	c.C4187A	p.T1396K	.	.	.
TRRAP	8295	broad.mit.edu	36	7	98388804	98388804	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003496	exon38	c.G5467T	p.E1823X	.	.	.
FAM69B	138311	broad.mit.edu	36	9	138737553	138737554	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152421	exon5	c.802_803insG	p.W268fs	.	.	.
S1PR3	1903	broad.mit.edu	36	9	90806907	90806907	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005226	exon2	c.C972T	p.R324R	.	.	.
GPR112	139378	broad.mit.edu	36	X	135258756	135258756	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_153834	exon6	c.C5225G	p.S1742C	.	.	.
GPR112	139378	broad.mit.edu	36	X	135259956	135259956	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_153834	exon6	c.T6425G	p.V2142G	.	.	.
FATE1	89885	broad.mit.edu	36	X	150641055	150641055	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033085	exon4	c.G366A	p.A122A	.	.	.
PPEF1	5475	broad.mit.edu	36	X	18717177	18717177	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152226	exon13	c.A930C	p.I310I	.	.	.
FAM47A	158724	broad.mit.edu	36	X	34058275	34058275	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_203408	exon1	c.C2042T	p.T681M	.	.	.
UXT	8409	broad.mit.edu	36	X	47401633	47401633	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004182	exon5	c.C249G	p.V83V	.	.	.
RLIM	51132	broad.mit.edu	36	X	73728715	73728715	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_183353	exon5	c.G1160A	p.R387H	.	.	.