Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
PDCD11	22984	broad.mit.edu	36	10	105154780	105154780	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014976	exon5	c.C414T	p.H138H	.	.	.
GRK5	2869	broad.mit.edu	36	10	121130370	121130370	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005308	exon3	c.C202T	p.R68W	.	.	.
BAG3	9531	broad.mit.edu	36	10	121422129	121422129	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004281	exon3	c.C880T	p.R294C	.	.	.
PRPF18	8559	broad.mit.edu	36	10	13698477	13698477	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003675	exon9	c.A866G	p.H289R	.	.	.
PDGFD	80310	broad.mit.edu	36	11	103319560	103319560	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033135	exon5	c.C584T	p.T195M	.	.	.
MUC5B	727897	broad.mit.edu	36	11	1224122	1224122	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002458	exon31	c.G9436C	p.A3146P	.	.	.
GLB1L3	112937	broad.mit.edu	36	11	133687515	133687515	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001080407	exon14	c.G1350T	p.Q450H	.	.	.
TNKS1BP1	85456	broad.mit.edu	36	11	56826567	56826567	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033396	exon7	c.G4625A	p.R1542Q	.	.	.
BATF2	116071	broad.mit.edu	36	11	64513385	64513385	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138456	exon3	c.C617T	p.P206L	.	.	.
TPP1	1200	broad.mit.edu	36	11	6595520	6595520	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000391	exon4	c.C293T	p.T98M	.	.	.
PPFIBP2	8495	broad.mit.edu	36	11	7570961	7570961	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003621	exon4	c.C302A	p.A101D	.	.	.
DLG2	1740	broad.mit.edu	36	11	83448039	83448039	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001142700	exon4	c.G418A	p.V140I	.	.	.
FAT3	120114	broad.mit.edu	36	11	92204680	92204680	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001008781	exon13	c.G9726A	p.L3242L	.	.	.
AMOTL1	154810	broad.mit.edu	36	11	94242104	94242104	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_130847	exon12	c.C2582T	p.T861M	.	.	.
APPL2	55198	broad.mit.edu	36	12	104117337	104117337	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018171	exon10	c.C807T	p.A269A	.	.	.
KDM2B	84678	broad.mit.edu	36	12	120501165	120501165	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032590	exon2	c.C196T	p.R66C	.	.	.
TMEM132B	114795	broad.mit.edu	36	12	124701203	124701203	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_052907	exon7	c.C1650A	p.D550E	.	.	.
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35A	p.G12D	 KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.
VDR	7421	broad.mit.edu	36	12	46524958	46524958	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000376	exon10	c.G1122A	p.P374P	.	.	.
NEUROD4	58158	broad.mit.edu	36	12	53706752	53706752	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_021191	exon2	c.C262T	p.R88X	.	.	.
RNF41	10193	broad.mit.edu	36	12	54890493	54890493	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005785	exon4	c.C217T	p.R73W	.	.	.
NAV3	89795	broad.mit.edu	36	12	76925330	76925330	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014903	exon8	c.C1881T	p.T627T	.	.	.
NAV3	89795	broad.mit.edu	36	12	77040183	77040183	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014903	exon16	c.C4082T	p.P1361L	.	.	.
SLC2A14	144195	broad.mit.edu	36	12	7865120	7865120	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_153449	exon9	c.C1002T	p.S334S	.	.	.
C12orf50	160419	broad.mit.edu	36	12	86904305	86904305	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152589	exon10	c.G837A	p.V279V	.	.	.
SACS	26278	broad.mit.edu	36	13	22806265	22806265	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014363	exon10	c.T9750C	p.F3250F	.	.	.
MTUS2	23281	broad.mit.edu	36	13	28498347	28498347	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001033602	exon1	c.A1542T	p.T514T	.	.	.
SUCLA2	8803	broad.mit.edu	36	13	47460732	47460732	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003850	exon4	c.G479A	p.R160Q	.	.	.
TRIM13	10206	broad.mit.edu	36	13	49484537	49484537	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005798	exon3	c.C460T	p.R154W	.	.	.
DYNC1H1	1778	broad.mit.edu	36	14	101585962	101585962	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001376	exon76	c.C13674T	p.F4558F	.	.	.
OR4K1	79544	broad.mit.edu	36	14	19474418	19474418	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004063	exon1	c.C753T	p.F251F	.	.	.
FANCM	57697	broad.mit.edu	36	14	44715087	44715087	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020937	exon14	c.C3380G	p.S1127C	.	.	.
DUOX2	50506	broad.mit.edu	36	15	43181328	43181328	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014080	exon21	c.C2806T	p.R936C	.	.	.
KIAA1370	56204	broad.mit.edu	36	15	50688485	50688485	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_019600	exon6	c.C1918A	p.Q640K	.	.	.
ADAMTS7	11173	broad.mit.edu	36	15	76867747	76867747	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014272	exon8	c.C1203T	p.S401S	.	.	.
NTRK3	4916	broad.mit.edu	36	15	86480819	86480819	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001007156	exon7	c.C648T	p.H216H	.	.	.
CNOT1	23019	broad.mit.edu	36	16	57166468	57166468	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_206999	exon15	c.C1771T	p.R591C	.	.	.
TP53	7157	broad.mit.edu	36	17	7518990	7518991	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126116	exon2	c.188_189insA	p.I63fs	 TP53,central_nervous_system,brain,Substitution - Missense,0 	.	.
TAOK1	57551	broad.mit.edu	36	17	24818302	24818302	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020791	exon3	c.G146A	p.R49H	.	.	.
LYZL6	57151	broad.mit.edu	36	17	31288887	31288887	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020426	exon2	c.G286A	p.V96I	.	.	.
CNP	1267	broad.mit.edu	36	17	37379096	37379096	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033133	exon4	c.C894T	p.A298A	.	.	.
BECN1	8678	broad.mit.edu	36	17	38229384	38229384	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003766	exon2	c.A38G	p.Q13R	.	.	.
KIF1C	10749	broad.mit.edu	36	17	4867745	4867745	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006612	exon23	c.C2887T	p.R963C	.	.	.
BPTF	2186	broad.mit.edu	36	17	63386332	63386332	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_182641	exon24	c.G8140A	p.E2714K	.	.	.
TGIF1	7050	broad.mit.edu	36	18	3446512	3446512	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003244	exon2	c.C177A	p.Y59X	.	.	.
BRSK1	84446	broad.mit.edu	36	19	60507991	60507992	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032430	exon14	c.1608_1609insC	p.P536fs	.	.	.
KLK12	43849	broad.mit.edu	36	19	56226996	56226996	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145894	exon4	c.C405T	p.T135T	.	.	.
CD70	970	broad.mit.edu	36	19	6541982	6541982	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001252	exon1	c.G32A	p.R11Q	.	.	.
INSR	3643	broad.mit.edu	36	19	7073700	7073700	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000208	exon19	c.G3454A	p.A1152T	.	.	.
MUC16	94025	broad.mit.edu	36	19	8919785	8919785	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024690	exon3	c.C28661T	p.S9554F	.	.	.
C1orf189	388701	broad.mit.edu	36	1	152445406	152445406	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001010979	exon1	c.T2A	p.M1K	.	.	.
KCNN3	3782	broad.mit.edu	36	1	153108747	153108747	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002249	exon1	c.C318T	p.T106T	.	.	.
NLRP3	114548	broad.mit.edu	36	1	245655005	245655005	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004895	exon3	c.T1637C	p.V546A	.	.	.
GMEB1	10691	broad.mit.edu	36	1	28903334	28903334	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006582	exon8	c.G804A	p.L268L	.	.	.
ZSCAN20	7579	broad.mit.edu	36	1	33717627	33717627	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_145238	exon2	c.C151T	p.R51C	.	.	.
EIF2B3	8891	broad.mit.edu	36	1	45089225	45089225	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020365	exon12	c.G1344T	p.Q448H	.	.	.
ABCD3	5825	broad.mit.edu	36	1	94744750	94744750	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002858	exon21	c.C1809T	p.V603V	.	.	.
UBOX5	22888	broad.mit.edu	36	20	3050687	3050687	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014948	exon3	c.A598G	p.T200A	.	.	.
DHX35	60625	broad.mit.edu	36	20	37083989	37083989	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001190809	exon15	c.C1497T	p.H499H	.	.	.
TH1L	51497	broad.mit.edu	36	20	57000441	57000441	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198976	exon10	c.A1227C	p.A409A	.	.	.
KRTAP22-1	337979	broad.mit.edu	36	21	30895352	30895352	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_181620	exon1	c.C42A	p.A14A	.	.	.
PCNT	5116	broad.mit.edu	36	21	46672005	46672005	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006031	exon34	c.G7362T	p.L2454L	.	.	.
CRYBB1	1414	broad.mit.edu	36	22	25338060	25338060	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001887	exon3	c.G275A	p.R92H	.	.	.
KDELR3	11015	broad.mit.edu	36	22	37200553	37200553	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016657	exon2	c.C171T	p.S57S	.	.	.
PHF5A	84844	broad.mit.edu	36	22	40186387	40186387	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032758	exon4	c.C294T	p.L98L	.	.	.
SELO	83642	broad.mit.edu	36	22	48991341	48991341	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_031454	exon5	c.G1225A	p.E409K	.	.	.
DPP10	57628	broad.mit.edu	36	2	116213890	116213890	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001178036	exon10	c.G653A	p.R218Q	.	.	.
TMEM163	81615	broad.mit.edu	36	2	135024646	135024646	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_030923	exon4	c.C423T	p.N141N	.	.	.
MMADHC	27249	broad.mit.edu	36	2	150134809	150134809	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015702	exon8	c.C816G	p.T272T	.	.	.
NEB	4703	broad.mit.edu	36	2	152129893	152129893	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001164507	exon117	c.A18382T	p.T6128S	.	.	.
NEB	4703	broad.mit.edu	36	2	152140999	152140999	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001164507	exon106	c.G16820A	p.R5607Q	.	.	.
ITGB6	3694	broad.mit.edu	36	2	160763996	160763996	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000888	exon2	c.T81C	p.G27G	.	.	.
PXDN	7837	broad.mit.edu	36	2	1626237	1626237	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012293	exon19	c.G3862A	p.V1288M	.	.	.
TLK1	9874	broad.mit.edu	36	2	171571610	171571610	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012290	exon16	c.T1544A	p.L515Q	.	.	.
NAB1	4664	broad.mit.edu	36	2	191246121	191246121	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005966	exon6	c.G1003A	p.E335K	.	.	.
ADAM23	8745	broad.mit.edu	36	2	207146164	207146164	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003812	exon18	c.G1737T	p.Q579H	.	.	.
CCDC108	255101	broad.mit.edu	36	2	219597206	219597206	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_194302	exon15	c.C2370T	p.S790S	.	.	.
KIAA1486	57624	broad.mit.edu	36	2	226155258	226155258	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020864	exon4	c.C881T	p.S294L	.	.	.
PSMD1	5707	broad.mit.edu	36	2	231655913	231655913	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002807	exon13	c.T1486G	p.L496V	.	.	.
GPR113	165082	broad.mit.edu	36	2	26389474	26389474	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001145169	exon9	c.C1287T	p.G429G	.	.	.
C2orf16	84226	broad.mit.edu	36	2	27656057	27656057	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032266	exon1	c.C3114T	p.Y1038Y	.	.	.
DHX57	90957	broad.mit.edu	36	2	38903752	38903752	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198963	exon17	c.G3178A	p.A1060T	.	.	.
LRRTM4	80059	broad.mit.edu	36	2	76829385	76829385	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001134745	exon4	c.G1717A	p.A573T	.	.	.
SFTPB	6439	broad.mit.edu	36	2	85747341	85747341	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198843	exon5	c.C339T	p.N113N	.	.	.
POLR1A	25885	broad.mit.edu	36	2	86124936	86124936	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015425	exon22	c.G2972T	p.C991F	.	.	.
SIDT1	54847	broad.mit.edu	36	3	114827640	114827640	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017699	exon24	c.G2309A	p.G770E	.	.	.
TMEM108	66000	broad.mit.edu	36	3	134581821	134581821	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001136469	exon4	c.G576A	p.R192R	.	.	.
TRIM42	287015	broad.mit.edu	36	3	141884159	141884160	+	Nonsense_Mutation	DNP	CC	AA	AA	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152616	exon2	c.507_508AA	.	.	.	.
HACL1	26061	broad.mit.edu	36	3	15591519	15591519	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012260	exon10	c.C878T	p.P293L	.	.	.
PIK3CA	5290	broad.mit.edu	36	3	180399570	180399570	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006218	exon2	c.G263A	p.R88Q	 PIK3CA,central_nervous_system,brain,Substitution - Missense,0 	.	.
PIK3CA	5290	broad.mit.edu	36	3	180404261	180404261	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006218	exon5	c.A1049G	p.D350G	 PIK3CA,central_nervous_system,brain,Substitution - Missense,+1 	.	.
FGF12	2257	broad.mit.edu	36	3	193608548	193608548	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021032	exon1	c.C159A	p.R53R	.	.	.
CHL1	10752	broad.mit.edu	36	3	377006	377006	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006614	exon12	c.T1205A	p.I402N	.	.	.
CDCP1	64866	broad.mit.edu	36	3	45135030	45135030	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022842	exon2	c.A170G	p.Y57C	.	.	.
PCDH10	57575	broad.mit.edu	36	4	134293328	134293328	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032961	exon1	c.C2583T	p.T861T	.	.	.
PCDH18	54510	broad.mit.edu	36	4	138669102	138669102	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_019035	exon3	c.C2720T	p.T907I	.	.	.
NR3C2	4306	broad.mit.edu	36	4	149577423	149577423	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001166104	exon2	c.G40A	p.D14N	.	.	.
FBXW7	55294	broad.mit.edu	36	4	153468835	153468835	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018315	exon8	c.C1153T	p.R385C	 FBXW7,large_intestine,NS,Substitution - Missense,+1 	.	.
GRIA2	2891	broad.mit.edu	36	4	158473533	158473533	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001083620	exon7	c.C854A	p.A285E	.	.	.
ASB5	140458	broad.mit.edu	36	4	177427232	177427232	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_080874	exon1	c.C22T	p.R8W	.	.	.
PCDH7	5099	broad.mit.edu	36	4	30334405	30334405	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032456	exon1	c.C2263T	p.P755S	.	.	.
DCAF4L1	285429	broad.mit.edu	36	4	41679662	41679662	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001029955	exon1	c.G1096A	p.V366M	.	.	.
KIAA1211	57482	broad.mit.edu	36	4	56876372	56876372	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020722	exon8	c.C1947T	p.S649S	.	.	.
UGT2B28	54490	broad.mit.edu	36	4	70190016	70190016	+	Silent	SNP	C	G	G	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_053039	exon4	c.C1047G	p.L349L	.	.	.
RASGEF1B	153020	broad.mit.edu	36	4	82574846	82574846	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152545	exon11	c.C1171T	p.R391C	.	.	.
THAP9	79725	broad.mit.edu	36	4	84058803	84058803	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024672	exon5	c.G2414A	p.C805Y	.	.	.
HERC5	51191	broad.mit.edu	36	4	89627270	89627270	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016323	exon15	c.G1879A	p.V627I	.	.	.
SLCO6A1	133482	broad.mit.edu	36	5	101862316	101862316	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173488	exon1	c.C132T	p.P44P	.	.	.
APC	324	broad.mit.edu	36	5	112156042	112156042	+	Nonsense_Mutation	SNP	C	T	T	rs62619935	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127510	exon8	c.C646T	p.R216X	.	.	.
RAPGEF6	51735	broad.mit.edu	36	5	130862186	130862186	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001164387	exon12	c.G1268A	p.R423H	.	.	.
SLC4A9	83697	broad.mit.edu	36	5	139725923	139725923	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_031467	exon14	c.C1903T	p.R635C	.	.	.
PCDHA5	56143	broad.mit.edu	36	5	140183232	140183232	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018908	exon1	c.C1688T	p.A563V	.	.	.
PCDHB4	56131	broad.mit.edu	36	5	140483453	140483453	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018938	exon1	c.G1689A	p.P563P	.	.	.
PCDHB15	56121	broad.mit.edu	36	5	140605335	140605335	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018935	exon1	c.A5T	p.E2V	.	.	.
PCDHGB1	56104	broad.mit.edu	36	5	140711803	140711803	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018922	exon1	c.G1792A	p.A598T	.	.	.
FAT2	2196	broad.mit.edu	36	5	150891358	150891358	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001447	exon13	c.G9794A	p.R3265H	.	.	.
RXFP3	51289	broad.mit.edu	36	5	33973666	33973666	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016568	exon1	c.A1064G	p.N355S	.	.	.
MGC42105	167359	broad.mit.edu	36	5	43281696	43281696	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_153361	exon2	c.G62A	p.R21Q	.	.	.
AIM1	202	broad.mit.edu	36	6	107115481	107115481	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001624	exon17	c.G4742A	p.R1581Q	.	.	.
SERINC1	57515	broad.mit.edu	36	6	122814841	122814841	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020755	exon6	c.T650G	p.F217C	.	.	.
ENPP1	5167	broad.mit.edu	36	6	132224441	132224441	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006208	exon9	c.C929T	p.A310V	.	.	.
OR2W1	26692	broad.mit.edu	36	6	29120568	29120568	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_030903	exon1	c.C364G	p.R122G	.	.	.
SCUBE3	222663	broad.mit.edu	36	6	35313765	35313765	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152753	exon7	c.C821T	p.T274M	.	.	.
MED20	9477	broad.mit.edu	36	6	41992634	41992634	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004275	exon2	c.C36T	p.A12A	.	.	.
CRISP1	167	broad.mit.edu	36	6	49911115	49911115	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001131	exon8	c.C623G	p.T208S	.	.	.
TFAP2D	83741	broad.mit.edu	36	6	50804666	50804666	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_172238	exon4	c.C737T	p.A246V	.	.	.
COL12A1	1303	broad.mit.edu	36	6	75941692	75941692	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004370	exon13	c.A2492C	p.K831T	.	.	.
BACH2	60468	broad.mit.edu	36	6	90718036	90718036	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_021813	exon7	c.G510A	p.T170T	.	.	.
PPP1R3A	5506	broad.mit.edu	36	7	113345597	113345597	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002711	exon1	c.T691G	p.C231G	.	.	.
PRSS1	5644	broad.mit.edu	36	7	142139364	142139364	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002769	exon3	c.C366T	p.R122R	.	.	.
GALNTL5	168391	broad.mit.edu	36	7	151330769	151330769	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145292	exon6	c.G696T	p.V232V	.	.	.
SDK1	221935	broad.mit.edu	36	7	3980596	3980596	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152744	exon13	c.C1887T	p.D629D	.	.	.
ADAM22	53616	broad.mit.edu	36	7	87445593	87445593	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_021722	exon3	c.C253G	p.H85D	.	.	.
OXR1	55074	broad.mit.edu	36	8	107821825	107821825	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001198535	exon3	c.T271C	p.L91L	.	.	.
FDFT1	2222	broad.mit.edu	36	8	11720952	11720952	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004462	exon5	c.A521G	p.Y174C	.	.	.
DLGAP2	9228	broad.mit.edu	36	8	1485015	1485015	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004745	exon2	c.C749T	p.A250V	.	.	.
MTFR1	9650	broad.mit.edu	36	8	66782800	66782800	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001145838	exon5	c.G834T	p.L278F	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77930401	77930401	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024721	exon10	c.G8689A	p.D2897N	.	.	.
OR13C8	138802	broad.mit.edu	36	9	106371649	106371649	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001004483	exon1	c.G380T	p.C127F	.	.	.
SETX	23064	broad.mit.edu	36	9	134162147	134162147	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015046	exon14	c.G5897A	p.G1966E	.	.	.
ZDHHC21	340481	broad.mit.edu	36	9	14648877	14648877	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_178566	exon7	c.A374G	p.N125S	.	.	.
CA9	768	broad.mit.edu	36	9	35669995	35669995	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001216	exon8	c.G1210A	p.V404I	.	.	.
PGM5	5239	broad.mit.edu	36	9	70284249	70284249	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021965	exon8	c.C1255T	p.R419X	.	.	.
ARMCX1	51309	broad.mit.edu	36	X	100694596	100694596	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016608	exon4	c.C27T	p.C9C	.	.	.
COL4A5	1287	broad.mit.edu	36	X	107703481	107703481	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000495	exon9	c.A487G	p.M163V	.	.	.
OFD1	8481	broad.mit.edu	36	X	13688712	13688712	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003611	exon16	c.C2212A	p.P738T	.	.	.
MTMR1	8776	broad.mit.edu	36	X	149651846	149651846	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003828	exon9	c.G1042A	p.A348T	.	.	.
CDKL5	6792	broad.mit.edu	36	X	18556456	18556456	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003159	exon18	c.G2541A	p.S847S	.	.	.
POLA1	5422	broad.mit.edu	36	X	24669438	24669438	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016937	exon21	c.T2224G	p.L742V	.	.	.
PHKA1	5255	broad.mit.edu	36	X	71739700	71739700	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001172436	exon25	c.C2734T	p.R912X	.	.	.
BRWD3	254065	broad.mit.edu	36	X	79851699	79851699	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_153252	exon21	c.C2359T	p.R787C	.	.	.
TBL1X	6907	broad.mit.edu	36	X	9643034	9643034	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001139468	exon17	c.C1545T	p.S515S	.	.	.
GPR143	4935	broad.mit.edu	36	X	9667585	9667585	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000273	exon8	c.G1060A	p.G354R	.	.	.
SHROOM2	357	broad.mit.edu	36	X	9860521	9860521	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001649	exon6	c.G3198A	p.P1066P	.	.	.