Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
MYOF	26509	broad.mit.edu	36	10	95231864	95231864	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_133337	exon1	c.C78A	p.V26V	.	.	.
SORBS1	10580	broad.mit.edu	36	10	97086441	97086441	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001034954	exon28	c.G3466A	p.V1156M	.	.	.
DGKZ	8525	broad.mit.edu	36	11	46311557	46311558	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_201532	exon1	c.156_157insC	p.G52fs	.	.	.
CTR9	9646	broad.mit.edu	36	11	10746079	10746079	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014633	exon14	c.C1837A	p.Q613K	.	.	.
LUZP2	338645	broad.mit.edu	36	11	24707314	24707314	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001009909	exon2	c.A86G	p.K29R	.	.	.
TTC17	55761	broad.mit.edu	36	11	43374922	43374922	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018259	exon6	c.C751T	p.R251X	.	.	.
ODZ4	26011	broad.mit.edu	36	11	78058871	78058871	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001098816	exon32	c.G6167T	p.R2056L	.	.	.
KRT78	196374	broad.mit.edu	36	12	51526836	51526836	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173352	exon3	c.C639T	p.N213N	.	.	.
MYO1A	4640	broad.mit.edu	36	12	55717130	55717130	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005379	exon20	c.G2068A	p.E690K	.	.	.
AVPR1A	552	broad.mit.edu	36	12	61830143	61830143	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000706	exon1	c.C741T	p.V247V	.	.	.
AICDA	57379	broad.mit.edu	36	12	8649274	8649274	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020661	exon3	c.C231T	p.R77R	.	.	.
MTUS2	23281	broad.mit.edu	36	13	28497906	28497906	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001033602	exon1	c.C1101T	p.T367T	.	.	.
KATNAL1	84056	broad.mit.edu	36	13	29680817	29680817	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032116	exon11	c.C1333T	p.R445C	.	.	.
NBEA	26960	broad.mit.edu	36	13	34590389	34590389	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015678	exon15	c.C2107A	p.L703I	.	.	.
TDRD3	81550	broad.mit.edu	36	13	60007284	60007284	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001146071	exon12	c.G1755A	p.M585I	.	.	.
RALGAPA1	253959	broad.mit.edu	36	14	35281330	35281330	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_194301	exon11	c.G1444C	p.E482Q	.	.	.
ZNF410	57862	broad.mit.edu	36	14	73445857	73445857	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021188	exon8	c.G974A	p.S325N	.	.	.
SPRED1	161742	broad.mit.edu	36	15	36401876	36401876	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152594	exon3	c.G350A	p.R117Q	.	.	.
PRTG	283659	broad.mit.edu	36	15	53757356	53757356	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_173814	exon8	c.G1312T	p.A438S	.	.	.
IDH3A	3419	broad.mit.edu	36	15	76239559	76239559	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005530	exon4	c.C245T	p.S82L	.	.	.
HDGFRP3	50810	broad.mit.edu	36	15	81611098	81611098	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016073	exon5	c.G479A	p.R160Q	.	.	.
C16orf79	283870	broad.mit.edu	36	16	2199391	2199391	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182563	exon6	c.G660A	p.S220S	.	.	.
C16orf90	646174	broad.mit.edu	36	16	3484836	3484836	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080524	exon2	c.89delC	p.A30fs	.	.	.
METRNL	284207	broad.mit.edu	36	17	78636162	78636163	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004431	exon2	c.230_231insG	p.A77fs	.	.	.
PIPOX	51268	broad.mit.edu	36	17	24396021	24396021	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016518	exon2	c.C133T	p.R45X	.	.	.
SRCIN1	80725	broad.mit.edu	36	17	33973251	33973251	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025248	exon5	c.C574T	p.R192W	.	.	.
TMEM99	147184	broad.mit.edu	36	17	36244517	36244517	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001195386	exon3	c.T223A	p.S75T	.	.	.
NT5C3L	115024	broad.mit.edu	36	17	37244878	37244878	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052935	exon4	c.C198T	p.S66S	.	.	.
CDC27	996	broad.mit.edu	36	17	42589724	42589724	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001114091	exon6	c.A501G	p.T167T	.	.	.
BCL6B	255877	broad.mit.edu	36	17	6869161	6869161	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_181844	exon5	c.T807C	p.A269A	.	.	.
FLII	2314	broad.mit.edu	36	17	18097477	18097477	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002018	exon9	c.876delC	p.S292fs	.	.	.
SERPINB4	6318	broad.mit.edu	36	18	59456065	59456065	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002974	exon8	c.C1041T	p.T347T	.	.	.
ZNF429	353088	broad.mit.edu	36	19	21512192	21512193	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001415	exon4	c.1497_1498insA	p.H499fs	.	.	.
CEACAM3	1084	broad.mit.edu	36	19	46993573	46993573	+	Missense_Mutation	SNP	G	C	C	rs61737016	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001815	exon2	c.G277C	p.A93P	.	.	.
PRR12	57479	broad.mit.edu	36	19	54811087	54811087	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020719	exon9	c.C5296T	p.R1766W	.	.	.
MIIP	60672	broad.mit.edu	36	1	12004894	12004894	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021933	exon3	c.270delG	p.S90fs	.	.	.
ADAM33	80332	broad.mit.edu	36	20	3602145	3602146	+	Splice_Site	INS	-	G	G	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
SIRPB2	284759	broad.mit.edu	36	20	1419968	1419968	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001122962	exon1	c.A38G	p.H13R	.	.	.
C20orf12	55184	broad.mit.edu	36	20	18377710	18377710	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001099407	exon7	c.C547A	p.P183T	.	.	.
MAVS	57506	broad.mit.edu	36	20	3794610	3794610	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020746	exon7	c.1439delA	p.E480fs	.	.	.
NCAM2	4685	broad.mit.edu	36	21	21618683	21618683	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004540	exon6	c.C729T	p.S243S	.	.	.
GRIK1	2897	broad.mit.edu	36	21	29885378	29885378	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_175611	exon9	c.G1245A	p.T415T	.	.	.
FTCD	10841	broad.mit.edu	36	21	46399817	46399817	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006657	exon1	c.49delC	p.Q17fs	.	.	.
SEPT5	5413	broad.mit.edu	36	22	18087736	18087736	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001009939	exon4	c.364delG	p.G122fs	.	.	.
IL18R1	8809	broad.mit.edu	36	2	102379575	102379575	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003855	exon10	c.G1423A	p.E475K	.	.	.
MBD5	55777	broad.mit.edu	36	2	148959917	148959917	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018328	exon11	c.G2982A	p.A994A	.	.	.
SCN9A	6335	broad.mit.edu	36	2	166763911	166763911	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002977	exon27	c.G5451A	p.L1817L	.	.	.
TTN	7273	broad.mit.edu	36	2	179104182	179104182	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003319	exon186	c.C78210T	p.H26070H	.	.	.
COL3A1	1281	broad.mit.edu	36	2	189570160	189570160	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000090	exon25	c.C1786A	p.R596R	.	.	.
FZD7	8324	broad.mit.edu	36	2	202607853	202607853	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003507	exon1	c.G238A	p.G80S	.	.	.
KIAA1486	57624	broad.mit.edu	36	2	226154967	226154967	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020864	exon4	c.G590A	p.R197Q	.	.	.
ASB3	51130	broad.mit.edu	36	2	53795083	53795083	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016115	exon7	c.G922T	p.A308S	.	.	.
POLQ	10721	broad.mit.edu	36	3	122689430	122689430	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_199420	exon16	c.G5038A	p.E1680K	.	.	.
MBD4	8930	broad.mit.edu	36	3	130633111	130633111	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003925	exon8	c.G1666A	p.V556M	.	.	.
ARHGEF26	26084	broad.mit.edu	36	3	155391830	155391830	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015595	exon8	c.A1703G	p.N568S	.	.	.
UBA6	55236	broad.mit.edu	36	4	68249486	68249487	+	Splice_Site	INS	-	G	G	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
DKK2	27123	broad.mit.edu	36	4	108064651	108064651	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014421	exon4	c.G689A	p.R230H	.	.	.
TLR3	7098	broad.mit.edu	36	4	187241014	187241014	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003265	exon4	c.C1180T	p.R394X	.	.	.
UGT2A3	79799	broad.mit.edu	36	4	69830874	69830874	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024743	exon5	c.G1283C	p.R428T	.	.	.
ADRA1B	147	broad.mit.edu	36	5	159331486	159331487	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000679	exon2	c.972_973insC	p.K324fs	.	.	.
PCDHA6	56142	broad.mit.edu	36	5	140189859	140189859	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018909	exon1	c.G1999A	p.V667M	.	.	.
PDGFRB	5159	broad.mit.edu	36	5	149478521	149478521	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002609	exon21	c.G2886C	p.L962F	.	.	.
NSD1	64324	broad.mit.edu	36	5	176642175	176642176	+	Missense_Mutation	DNP	TC	GT	GT	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	TC	TC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022455	exon19	c.5996_5997GT	.	.	.	.
ISL1	3670	broad.mit.edu	36	5	50721473	50721473	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002202	exon4	c.C715T	p.R239X	.	.	.
MOXD1	26002	broad.mit.edu	36	6	132764139	132764140	+	Frame_Shift_Ins	INS	-	CC	CC	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015529	exon1	c.120_121insGG	p.G40fs	.	.	.
MYO6	4646	broad.mit.edu	36	6	76658969	76658969	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004999	exon28	c.T2949C	p.A983A	.	.	.
GARS	2617	broad.mit.edu	36	7	30601185	30601186	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002047	exon1	c.123_124insG	p.C41fs	.	.	.
MACC1	346389	broad.mit.edu	36	7	20166065	20166065	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_182762	exon5	c.C444T	p.D148D	.	.	.
PON3	5446	broad.mit.edu	36	7	94839533	94839533	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000940	exon4	c.C255G	p.I85M	.	.	.
CPSF1	29894	broad.mit.edu	36	8	145589596	145589597	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013291	exon37	c.4163_4164insC	p.R1388fs	.	.	.
FAM135B	51059	broad.mit.edu	36	8	139234174	139234174	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015912	exon13	c.C1726A	p.H576N	.	.	.
FAM22F	54754	broad.mit.edu	36	9	96121050	96121050	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017561	exon7	c.1789delC	p.Q597fs	.	.	.
ZXDA	7789	broad.mit.edu	36	X	57952957	57952958	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007156	exon1	c.623_624insC	p.Q208fs	.	.	.
CNGA2	1260	broad.mit.edu	36	X	150663525	150663525	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005140	exon7	c.C1894T	p.R632C	.	.	.
GPR64	10149	broad.mit.edu	36	X	18934298	18934298	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001184837	exon19	c.T1606A	p.L536I	.	.	.
DMD	1756	broad.mit.edu	36	X	32314464	32314464	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004011	exon5	c.G535T	p.E179X	.	.	.
WNK3	65267	broad.mit.edu	36	X	54294786	54294786	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001002838	exon14	c.T2427C	p.A809A	.	.	.
PABPC5	140886	broad.mit.edu	36	X	90577398	90577398	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3971-01A-01W-0995-10	TCGA-AA-3971-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_080832	exon2	c.C166T	p.R56C	.	.	.