Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
PTEN	5728	broad.mit.edu	36	10	89701878	89701878	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000314	exon6	c.G516A	p.R172R	.	.	.
MYOF	26509	broad.mit.edu	36	10	95059810	95059810	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_133337	exon52	c.T6065A	p.L2022H	.	.	.
NRXN2	9379	broad.mit.edu	36	11	64177772	64177773	+	Splice_Site	INS	-	G	G	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
IL10RA	3587	broad.mit.edu	36	11	117374701	117374701	+	Missense_Mutation	SNP	A	T	T	rs3741310	byCluster;byHapMap	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001558	exon7	c.A872T	p.D291V	.	.	.
MICAL2	9645	broad.mit.edu	36	11	12205229	12205229	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014632	exon15	c.C1970T	p.T657I	.	.	.
SF3B2	10992	broad.mit.edu	36	11	65579596	65579596	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006842	exon5	c.G513A	p.S171S	.	.	.
RELT	84957	broad.mit.edu	36	11	72781040	72781040	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152222	exon6	c.C504T	p.I168I	.	.	.
ODZ4	26011	broad.mit.edu	36	11	78090644	78090644	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001098816	exon28	c.C4662A	p.D1554E	.	.	.
TYR	7299	broad.mit.edu	36	11	88551006	88551006	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000372	exon1	c.G237A	p.S79S	 TYR,central_nervous_system,brain,Substitution - coding silent,0 	.	.
CNTN5	53942	broad.mit.edu	36	11	98932199	98932199	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_175566	exon3	c.T44C	p.M15T	.	.	.
ALDH1L2	160428	broad.mit.edu	36	12	103988538	103988538	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001034173	exon3	c.G368T	p.G123V	.	.	.
DHX37	57647	broad.mit.edu	36	12	124017297	124017297	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032656	exon12	c.G1585C	p.A529P	.	.	.
SLCO1B3	28234	broad.mit.edu	36	12	20927770	20927770	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_019844	exon12	c.C1649G	p.T550R	.	.	.
KRAS	3845	broad.mit.edu	36	12	25271521	25271521	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004985	exon3	c.G204T	p.R68S	.	.	.
KRT73	319101	broad.mit.edu	36	12	51298272	51298272	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_175068	exon1	c.G304A	p.G102R	.	.	.
SLC16A7	9194	broad.mit.edu	36	12	58454935	58454935	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004731	exon4	c.C592A	p.L198I	.	.	.
ZFC3H1	196441	broad.mit.edu	36	12	70312252	70312252	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_144982	exon15	c.C3127T	p.R1043X	.	.	.
OSBPL8	114882	broad.mit.edu	36	12	75289392	75289392	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020841	exon19	c.A2021C	p.K674T	.	.	.
CLEC2B	9976	broad.mit.edu	36	12	9897166	9897166	+	Nonstop_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005127	exon5	c.A450C	p.X150Y	.	.	.
MYO16	23026	broad.mit.edu	36	13	108273518	108273518	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001198950	exon9	c.G988A	p.E330K	.	.	.
RXFP2	122042	broad.mit.edu	36	13	31247470	31247470	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001166058	exon7	c.C585T	p.N195N	.	.	.
SLITRK1	114798	broad.mit.edu	36	13	83351922	83351922	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_052910	exon1	c.T1722A	p.N574K	.	.	.
PRKD1	5587	broad.mit.edu	36	14	29138043	29138043	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002742	exon15	c.G2107A	p.V703I	.	.	.
EML5	161436	broad.mit.edu	36	14	88194334	88194334	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_183387	exon26	c.A3827T	p.K1276I	.	.	.
C14orf169	79697	broad.mit.edu	36	14	73028305	73028305	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024644	exon1	c.830delA	p.H277fs	.	.	.
ATP10A	57194	broad.mit.edu	36	15	23514530	23514530	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024490	exon8	c.G1473A	p.R491R	.	.	.
TMCO5A	145942	broad.mit.edu	36	15	36016440	36016440	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152453	exon3	c.C241A	p.L81M	.	.	.
SLCO3A1	28232	broad.mit.edu	36	15	90448682	90448682	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013272	exon4	c.C915T	p.S305S	.	.	.
BCKDK	10295	broad.mit.edu	36	16	31031057	31031057	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005881	exon12	c.C1209T	p.I403I	.	.	.
HEATR3	55027	broad.mit.edu	36	16	48675587	48675587	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182922	exon9	c.G1174A	p.E392K	.	.	.
PSMD7	5713	broad.mit.edu	36	16	72897110	72897118	+	In_Frame_Del	DEL	AGGAGAAAA	-	-	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	AGGAGAAAA	AGGAGAAAA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002811	exon7	c.953_961del	p.318_321del	.	.	.
TIAF1	9220	broad.mit.edu	36	17	24426007	24426007	+	De_novo_Start_OutOfFrame	SNP	G	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_203318	exon41	c.C6027T	p.H2009H	.	.	.
CCL7	6354	broad.mit.edu	36	17	29621428	29621428	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006273	exon1	c.A6G	p.K2K	.	.	.
PLEKHH3	79990	broad.mit.edu	36	17	38082004	38082004	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024927	exon1	c.A104G	p.E35G	.	.	.
HOXB7	3217	broad.mit.edu	36	17	44040379	44040379	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004502	exon2	c.C478T	p.R160C	.	.	.
SDK2	54549	broad.mit.edu	36	17	68922450	68922450	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001144952	exon18	c.T2412G	p.N804K	.	.	.
ACOX1	51	broad.mit.edu	36	17	71463337	71463337	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_007292	exon6	c.G679A	p.G227S	.	.	.
TP53	7157	broad.mit.edu	36	17	7517839	7517839	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon8	c.G824A	p.C275Y	 TP53,central_nervous_system,brain,Substitution - Missense,-1 	.	.
RNF213	57674	broad.mit.edu	36	17	75936064	75936064	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020914	exon30	c.C9481G	p.L3161V	.	.	.
ALOX15B	247	broad.mit.edu	36	17	7892588	7892588	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001039130	exon13	c.G1924A	p.E642K	.	.	.
RNF165	494470	broad.mit.edu	36	18	42290577	42290577	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152470	exon8	c.C1021A	p.Q341K	.	.	.
PRKD2	25865	broad.mit.edu	36	19	51911398	51911399	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001079880	exon2	c.70_71insC	p.G24fs	.	.	.
NCAN	1463	broad.mit.edu	36	19	19210172	19210172	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004386	exon11	c.G3361A	p.G1121S	.	.	.
ZNF429	353088	broad.mit.edu	36	19	21512205	21512205	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001415	exon4	c.A1510G	p.S504G	.	.	.
HIPK4	147746	broad.mit.edu	36	19	45578899	45578899	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144685	exon3	c.G839A	p.R280H	.	.	.
ZNF473	25888	broad.mit.edu	36	19	55240551	55240551	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001006656	exon5	c.T1039C	p.Y347H	.	.	.
TMEM146	257062	broad.mit.edu	36	19	5702773	5702773	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152784	exon12	c.A1103T	p.K368M	.	.	.
LILRB1	10859	broad.mit.edu	36	19	59836343	59836343	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001081639	exon7	c.C1023T	p.N341N	.	.	.
MUC16	94025	broad.mit.edu	36	19	8918760	8918760	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024690	exon3	c.G29686T	p.A9896S	.	.	.
FCGR1A	2209	broad.mit.edu	36	1	148026654	148026654	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000566	exon4	c.G416A	p.R139Q	.	.	.
LCE1A	353131	broad.mit.edu	36	1	151066655	151066655	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_178348	exon1	c.A83G	p.K28R	.	.	.
TMEM79	84283	broad.mit.edu	36	1	154527807	154527807	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032323	exon4	c.T979C	p.Y327H	.	.	.
IQGAP3	128239	broad.mit.edu	36	1	154766721	154766721	+	Nonsense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178229	exon34	c.A4204T	p.K1402X	.	.	.
SPTA1	6708	broad.mit.edu	36	1	156873096	156873096	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003126	exon37	c.C5269T	p.R1757C	.	.	.
PRELP	5549	broad.mit.edu	36	1	201719019	201719019	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002725	exon2	c.C84T	p.P28P	.	.	.
SYT14	255928	broad.mit.edu	36	1	208400995	208400995	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153262	exon8	c.G1653A	p.A551A	.	.	.
NVL	4931	broad.mit.edu	36	1	222485556	222485556	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002533	exon22	c.A2521C	p.K841Q	.	.	.
C1orf96	126731	broad.mit.edu	36	1	227527617	227527617	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145257	exon4	c.G801A	p.S267S	.	.	.
PCNXL2	80003	broad.mit.edu	36	1	231298230	231298230	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014801	exon22	c.C3840T	p.L1280L	.	.	.
OR2T34	127068	broad.mit.edu	36	1	246804386	246804386	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001821	exon1	c.C296T	p.P99L	.	.	.
SMPDL3B	27293	broad.mit.edu	36	1	28148185	28148185	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014474	exon3	c.G298A	p.D100N	.	.	.
C1orf50	79078	broad.mit.edu	36	1	43013011	43013011	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024097	exon4	c.A299G	p.H100R	.	.	.
SNPH	9751	broad.mit.edu	36	20	1225023	1225023	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014723	exon3	c.T8A	p.M3K	.	.	.
STK4	6789	broad.mit.edu	36	20	43063255	43063255	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006282	exon9	c.C994T	p.R332X	.	.	.
SEMG1	6406	broad.mit.edu	36	20	43269740	43269740	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003007	exon2	c.C388T	p.H130Y	.	.	.
SEMG2	6407	broad.mit.edu	36	20	43284616	43284616	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003008	exon2	c.C929T	p.S310F	.	.	.
CBLN4	140689	broad.mit.edu	36	20	54009291	54009291	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_080617	exon2	c.A311T	p.N104I	.	.	.
TIAM1	7074	broad.mit.edu	36	21	31520070	31520070	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003253	exon8	c.C1652T	p.A551V	.	.	.
TUBA8	51807	broad.mit.edu	36	22	16987051	16987051	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001193414	exon3	c.C157T	p.L53L	.	.	.
KCNJ3	3760	broad.mit.edu	36	2	155420021	155420021	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002239	exon3	c.G1456A	p.G486R	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167812599	167812599	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001199144	exon7	c.A5785G	p.K1929E	.	.	.
TTN	7273	broad.mit.edu	36	2	179152725	179152725	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003319	exon147	c.G40249A	p.G13417R	.	.	.
EPAS1	2034	broad.mit.edu	36	2	46461143	46461143	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001430	exon12	c.G1828A	p.D610N	.	.	.
LOXL3	84695	broad.mit.edu	36	2	74617082	74617082	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032603	exon6	c.G937A	p.A313T	.	.	.
C2orf89	129293	broad.mit.edu	36	2	84961600	84961600	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080824	exon1	c.G75A	p.A25A	.	.	.
MUC4	4585	broad.mit.edu	36	3	196996768	196996769	+	In_Frame_Ins	INS	-	GAT	GAT	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018406	exon2	c.6078_6079insATC	p.S2026delinsSS	.	.	.
UPK1B	7348	broad.mit.edu	36	3	120389318	120389318	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006952	exon3	c.G76A	p.G26S	.	.	.
CPB1	1360	broad.mit.edu	36	3	150041433	150041433	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001871	exon5	c.G455A	p.R152H	.	.	.
VPS8	23355	broad.mit.edu	36	3	186095345	186095345	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001009921	exon22	c.T1942A	p.L648I	.	.	.
MASP1	5648	broad.mit.edu	36	3	188426914	188426914	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001879	exon12	c.C1530A	p.S510R	.	.	.
MASP1	5648	broad.mit.edu	36	3	188436443	188436443	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_139125	exon11	c.G1910A	p.R637H	.	.	.
CHL1	10752	broad.mit.edu	36	3	382665	382666	+	Missense_Mutation	DNP	CC	AA	AA	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006614	exon15	c.1618_1619AA	.	.	.	.
ROBO1	6091	broad.mit.edu	36	3	78767812	78767812	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002941	exon23	c.G3174A	p.L1058L	.	.	.
SETD5	55209	broad.mit.edu	36	3	9461849	9461849	+	De_novo_Start_OutOfFrame	SNP	T	G	G	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080517	exon12	c.T1305G	p.I435M	.	.	.
PSAPL1	768239	broad.mit.edu	36	4	7486776	7486777	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001085382	exon1	c.731_732insC	p.R244fs	.	.	.
SPON2	10417	broad.mit.edu	36	4	1155639	1155640	+	Splice_Site	DNP	CC	AA	AA	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001199021	exon4	c.220_220TT	.	.	.	.
ARFIP1	27236	broad.mit.edu	36	4	154028866	154028866	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001025593	exon7	c.G827A	p.R276H	.	.	.
NPY1R	4886	broad.mit.edu	36	4	164466081	164466081	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000909	exon3	c.T979G	p.F327V	.	.	.
FIP1L1	81608	broad.mit.edu	36	4	54003581	54003581	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_030917	exon14	c.T1179A	p.F393L	.	.	.
CRMP1	1400	broad.mit.edu	36	4	5913713	5913713	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001313	exon3	c.C254T	p.A85V	.	.	.
SLC4A4	8671	broad.mit.edu	36	4	72557338	72557338	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001134742	exon14	c.C1690T	p.L564L	.	.	.
EFNA5	1946	broad.mit.edu	36	5	106744862	106744862	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001962	exon5	c.C680T	p.T227I	.	.	.
APC	324	broad.mit.edu	36	5	112190790	112190790	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon10	c.C1441T	p.R481X	 APC,large_intestine,colon,Substitution - Nonsense,0 	.	.
APC	324	broad.mit.edu	36	5	112203106	112203106	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.G3862T	p.E1288X	 APC,pancreas,NS,Substitution - Missense,0 	.	.
PRR16	51334	broad.mit.edu	36	5	120049867	120049867	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016644	exon3	c.C410A	p.P137Q	.	.	.
HAVCR1	26762	broad.mit.edu	36	5	156389324	156389324	+	Nonstop_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012206	exon8	c.T1093C	p.X365Q	.	.	.
GRM6	2916	broad.mit.edu	36	5	178346036	178346036	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000843	exon8	c.C1825T	p.R609W	.	.	.
ADAMTS12	81792	broad.mit.edu	36	5	33787380	33787380	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_030955	exon3	c.T520G	p.F174V	.	.	.
HCN1	348980	broad.mit.edu	36	5	45298245	45298245	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021072	exon8	c.G2208A	p.Q736Q	.	.	.
ATP6AP1L	92270	broad.mit.edu	36	5	81649762	81649762	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001017971	exon4	c.C562T	p.H188Y	.	.	.
TFAP2A	7020	broad.mit.edu	36	6	10518315	10518315	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003220	exon2	c.C285G	p.G95G	.	.	.
ROS1	6098	broad.mit.edu	36	6	117765098	117765098	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002944	exon31	c.T5178C	p.N1726N	.	.	.
BCLAF1	9774	broad.mit.edu	36	6	136632373	136632373	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014739	exon9	c.G2114T	p.S705I	.	.	.
TNFAIP3	7128	broad.mit.edu	36	6	138241971	138241971	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006290	exon7	c.G1696T	p.D566Y	.	.	.
ZDHHC14	79683	broad.mit.edu	36	6	157973884	157973884	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153746	exon5	c.T734A	p.L245H	.	.	.
NHLRC1	378884	broad.mit.edu	36	6	18230178	18230178	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198586	exon1	c.C639A	p.G213G	.	.	.
GPX6	257202	broad.mit.edu	36	6	28591482	28591482	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182701	exon1	c.G18A	p.Q6Q	.	.	.
DNAH8	1769	broad.mit.edu	36	6	38970470	38970470	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001371	exon57	c.A7948T	p.T2650S	.	.	.
PRIM2	5558	broad.mit.edu	36	6	57296985	57296985	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000947	exon4	c.C286T	p.R96X	.	.	.
SPACA1	81833	broad.mit.edu	36	6	88825958	88825958	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_030960	exon5	c.C543T	p.F181F	.	.	.
ANKRD6	22881	broad.mit.edu	36	6	90394086	90394086	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014942	exon14	c.C1435T	p.R479C	.	.	.
BACH2	60468	broad.mit.edu	36	6	90717255	90717255	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021813	exon7	c.G1291A	p.V431M	.	.	.
SDK1	221935	broad.mit.edu	36	7	3980636	3980636	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152744	exon13	c.G1927A	p.G643S	.	.	.
USP17L2	377630	broad.mit.edu	36	8	12033545	12033545	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_201402	exon1	c.C134G	p.S45C	.	.	.
KLHL38	340359	broad.mit.edu	36	8	124733069	124733069	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001081675	exon1	c.G1279A	p.A427T	.	.	.
SLC25A37	51312	broad.mit.edu	36	8	23479757	23479757	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016612	exon2	c.C402T	p.D134D	.	.	.
ADRA1A	148	broad.mit.edu	36	8	26777915	26777915	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033302	exon1	c.C489T	p.F163F	.	.	.
FAM110B	90362	broad.mit.edu	36	8	59221786	59221786	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_147189	exon5	c.G443A	p.R148Q	.	.	.
POP1	10940	broad.mit.edu	36	8	99230247	99230247	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001145860	exon13	c.T1739G	p.L580R	.	.	.
ZMYND19	116225	broad.mit.edu	36	9	139601362	139601363	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138462	exon4	c.237_238insG	p.G79fs	.	.	.
SURF6	6838	broad.mit.edu	36	9	135188657	135188657	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006753	exon5	c.C955A	p.Q319K	.	.	.
FAM22F	54754	broad.mit.edu	36	9	96122614	96122614	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017561	exon5	c.G1065C	p.K355N	.	.	.
TRMT2B	79979	broad.mit.edu	36	X	100178708	100178708	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001167970	exon6	c.A449G	p.N150S	.	.	.
IGSF1	3547	broad.mit.edu	36	X	130237214	130237214	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001170962	exon15	c.C3076T	p.R1026C	.	.	.
MAGEC1	9947	broad.mit.edu	36	X	140823994	140823994	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005462	exon4	c.A3138C	p.K1046N	.	.	.
BMP15	9210	broad.mit.edu	36	X	50670615	50670615	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005448	exon1	c.C92T	p.S31F	.	.	.
PGK1	5230	broad.mit.edu	36	X	77252061	77252061	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000291	exon2	c.A107C	p.N36T	.	.	.