Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
AKR1C4	1109	broad.mit.edu	36	10	5237730	5237730	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001818	exon4	c.C380T	p.T127M	.	.	.
SLIT1	6585	broad.mit.edu	36	10	98798775	98798775	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003061	exon14	c.C1392A	p.A464A	.	.	.
UBTD1	80019	broad.mit.edu	36	10	99319950	99319950	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024954	exon3	c.C364T	p.P122S	.	.	.
NCAM1	4684	broad.mit.edu	36	11	112611005	112611005	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001076682	exon13	c.C1705T	p.R569X	.	.	.
ABCC8	6833	broad.mit.edu	36	11	17439892	17439892	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000352	exon5	c.C636T	p.D212D	.	.	.
OR4A5	81318	broad.mit.edu	36	11	51268251	51268251	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001005272	exon1	c.A721T	p.S241C	.	.	.
OR5M9	390162	broad.mit.edu	36	11	55987401	55987401	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001004743	exon1	c.G53A	p.R18H	.	.	.
MS4A10	341116	broad.mit.edu	36	11	60318080	60318080	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_206893	exon5	c.C420A	p.F140L	.	.	.
FADS2	9415	broad.mit.edu	36	11	61372282	61372282	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004265	exon5	c.G694A	p.D232N	.	.	.
CFL1	1072	broad.mit.edu	36	11	65380010	65380010	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005507	exon2	c.A283C	p.K95Q	.	.	.
ZNF214	7761	broad.mit.edu	36	11	6979269	6979269	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013249	exon3	c.G221A	p.G74D	.	.	.
NUMA1	4926	broad.mit.edu	36	11	71403180	71403180	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006185	exon15	c.T3017G	p.V1006G	.	.	.
SPCS2	9789	broad.mit.edu	36	11	74365736	74365736	+	Nonstop_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014752	exon5	c.G681T	p.X227Y	.	.	.
ALG10B	144245	broad.mit.edu	36	12	37000987	37000987	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001013620	exon3	c.C1127A	p.A376D	.	.	.
PRICKLE1	144165	broad.mit.edu	36	12	41144545	41144545	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001144882	exon7	c.T1558C	p.S520P	.	.	.
VWF	7450	broad.mit.edu	36	12	5928551	5928551	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000552	exon52	c.G8333A	p.R2778Q	.	.	.
PTPRR	5801	broad.mit.edu	36	12	69572819	69572819	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002849	exon2	c.C264T	p.P88P	.	.	.
CYSLTR2	57105	broad.mit.edu	36	13	48179776	48179776	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020377	exon1	c.G822C	p.W274C	.	.	.
ALDH6A1	4329	broad.mit.edu	36	14	73603184	73603184	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005589	exon9	c.C1201G	p.P401A	.	.	.
RYR3	6263	broad.mit.edu	36	15	31741875	31741875	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001036	exon35	c.G4852A	p.A1618T	.	.	.
LCTL	197021	broad.mit.edu	36	15	64640581	64640581	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_207338	exon5	c.C607A	p.R203R	.	.	.
SRRM2	23524	broad.mit.edu	36	16	2756047	2756047	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016333	exon11	c.A5517C	p.R1839S	.	.	.
ZNF768	79724	broad.mit.edu	36	16	30444322	30444322	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024671	exon2	c.C640A	p.P214T	.	.	.
DNAJA3	9093	broad.mit.edu	36	16	4431458	4431458	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001135110	exon4	c.C511A	p.H171N	.	.	.
HMOX2	3163	broad.mit.edu	36	16	4498053	4498053	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002134	exon4	c.G543T	p.G181G	.	.	.
PHLPP2	23035	broad.mit.edu	36	16	70260684	70260684	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015020	exon10	c.C1623T	p.P541P	.	.	.
CNTNAP4	85445	broad.mit.edu	36	16	75090021	75090021	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033401	exon15	c.T2293C	p.X765R	.	.	.
DNAH9	1770	broad.mit.edu	36	17	11786446	11786446	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004662	exon13	c.T1698C	p.V566V	.	.	.
TRIM16	10626	broad.mit.edu	36	17	15438853	15438853	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006382	exon10	c.G1781A	p.G594D	.	.	.
COG1	9382	broad.mit.edu	36	17	68713897	68713897	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018714	exon11	c.A2520C	p.K840N	.	.	.
TP53	7157	broad.mit.edu	36	17	7520115	7520118	+	Frame_Shift_Del	DEL	GGAA	-	-	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	GGAA	GGAA	GGAA	-	GGAA	GGAA	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001126114	exon4	c.294_297del	p.98_99del	.	.	.
DSEL	92126	broad.mit.edu	36	18	63331257	63331257	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032160	exon2	c.G1599A	p.A533A	.	.	.
ZNF407	55628	broad.mit.edu	36	18	70476430	70476430	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001146190	exon1	c.C4467A	p.V1489V	.	.	.
GPR32	2854	broad.mit.edu	36	19	55966481	55966481	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001506	exon1	c.C812T	p.P271L	.	.	.
SIGLEC14	100049587	broad.mit.edu	36	19	56841025	56841025	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001098612	exon3	c.A522C	p.P174P	.	.	.
ZNF583	147949	broad.mit.edu	36	19	61627517	61627517	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001159860	exon5	c.C1678A	p.Q560K	.	.	.
OR7D2	162998	broad.mit.edu	36	19	9158386	9158386	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_175883	exon1	c.C929T	p.S310F	.	.	.
EXOSC10	5394	broad.mit.edu	36	1	11060084	11060084	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001998	exon16	c.T1804C	p.L602L	.	.	.
KCNA2	3737	broad.mit.edu	36	1	110948455	110948455	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004974	exon2	c.G473C	p.S158T	.	.	.
ATP1A4	480	broad.mit.edu	36	1	158410036	158410036	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144699	exon13	c.C1896A	p.A632A	.	.	.
ITLN2	142683	broad.mit.edu	36	1	159181563	159181563	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_080878	exon8	c.C969T	p.F323F	.	.	.
TNN	63923	broad.mit.edu	36	1	173354566	173354566	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_022093	exon11	c.A2633G	p.D878G	.	.	.
SRSF4	6429	broad.mit.edu	36	1	29348308	29348308	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005626	exon6	c.G686A	p.R229Q	.	.	.
HECTD3	79654	broad.mit.edu	36	1	45245827	45245827	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024602	exon10	c.C1348T	p.R450C	.	.	.
ST6GALNAC5	81849	broad.mit.edu	36	1	77282541	77282541	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_030965	exon3	c.G326A	p.R109Q	.	.	.
SAMHD1	25939	broad.mit.edu	36	20	35008598	35008598	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015474	exon2	c.C232T	p.L78L	.	.	.
R3HDML	140902	broad.mit.edu	36	20	42405543	42405543	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178491	exon3	c.A493G	p.T165A	.	.	.
NCOA3	8202	broad.mit.edu	36	20	45702105	45702105	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001174087	exon16	c.G2983A	p.A995T	.	.	.
LTN1	26046	broad.mit.edu	36	21	29235487	29235487	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015565	exon25	c.G4546T	p.D1516Y	.	.	.
C22orf42	150297	broad.mit.edu	36	22	30876332	30876332	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001010859	exon7	c.C628T	p.L210F	.	.	.
DPP10	57628	broad.mit.edu	36	2	115817925	115817925	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001178036	exon4	c.G88T	p.V30L	.	.	.
LRP2	4036	broad.mit.edu	36	2	169740014	169740014	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004525	exon55	c.C10703T	p.P3568L	.	.	.
TTN	7273	broad.mit.edu	36	2	179116249	179116249	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003319	exon175	c.C69501T	p.A23167A	.	.	.
SF3B1	23451	broad.mit.edu	36	2	197989719	197989719	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012433	exon6	c.T657A	p.D219E	.	.	.
XRCC5	7520	broad.mit.edu	36	2	216692116	216692116	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021141	exon5	c.C474T	p.D158D	.	.	.
TRIP12	9320	broad.mit.edu	36	2	230376595	230376595	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004238	exon19	c.T2709G	p.L903L	.	.	.
LHCGR	3973	broad.mit.edu	36	2	48789615	48789615	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000233	exon8	c.G656A	p.R219H	.	.	.
TOMM70A	9868	broad.mit.edu	36	3	101574254	101574254	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014820	exon9	c.C1338A	p.Y446X	.	.	.
CBLB	868	broad.mit.edu	36	3	106895109	106895109	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_170662	exon13	c.G1973C	p.G658A	.	.	.
TP63	8626	broad.mit.edu	36	3	191094949	191094950	+	Missense_Mutation	DNP	CA	AT	AT	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	CA	CA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001114980	exon12	c.1725_1726AT	.	.	.	.
CADPS	8618	broad.mit.edu	36	3	62478898	62478898	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_183393	exon14	c.C2308T	p.R770X	.	.	.
FAT4	79633	broad.mit.edu	36	4	126460521	126460521	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024582	exon1	c.C3505T	p.R1169W	.	.	.
RNF175	285533	broad.mit.edu	36	4	154868872	154868872	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173662	exon4	c.C338A	p.S113Y	.	.	.
APC	324	broad.mit.edu	36	5	112203289	112203289	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.C4045T	p.Q1349X	 APC,large_intestine,colon,Substitution - Nonsense,0 	.	.
UGT3A1	133688	broad.mit.edu	36	5	35991709	35991709	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152404	exon6	c.C1090T	p.R364C	.	.	.
ZNF192	7745	broad.mit.edu	36	6	28229559	28229559	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006298	exon6	c.C1522A	p.H508N	.	.	.
ZKSCAN3	80317	broad.mit.edu	36	6	28435666	28435666	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024493	exon2	c.G324A	p.E108E	.	.	.
ABCC10	89845	broad.mit.edu	36	6	43508690	43508690	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001198934	exon3	c.G994A	p.G332S	.	.	.
HYAL4	23553	broad.mit.edu	36	7	123296011	123296011	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012269	exon3	c.C448T	p.R150X	.	.	.
AGAP3	116988	broad.mit.edu	36	7	150470545	150470545	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031946	exon16	c.T2164A	p.W722R	.	.	.
VSTM2A	222008	broad.mit.edu	36	7	54604199	54604199	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182546	exon5	c.C638T	p.A213V	.	.	.
SEMA3D	223117	broad.mit.edu	36	7	84466807	84466807	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152754	exon17	c.G2219A	p.R740Q	.	.	.
OSBPL3	26031	broad.mit.edu	36	7	24816087	24816087	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145321	exon19	c.2073delC	p.Y691fs	.	.	.
FBXO43	286151	broad.mit.edu	36	8	101222752	101222752	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001029860	exon2	c.G906A	p.P302P	.	.	.
DLC1	10395	broad.mit.edu	36	8	13401207	13401207	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182643	exon2	c.A745C	p.T249P	.	.	.
CLU	1191	broad.mit.edu	36	8	27518494	27518494	+	Silent	SNP	G	C	C	rs1804560	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001171138	exon5	c.C726G	p.P242P	.	.	.
SCARA5	286133	broad.mit.edu	36	8	27793121	27793121	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_173833	exon8	c.G1235A	p.R412Q	.	.	.
PXDNL	137902	broad.mit.edu	36	8	52483996	52483996	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_144651	exon17	c.C2741T	p.S914L	.	.	.
KIAA1797	54914	broad.mit.edu	36	9	20748144	20748144	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017794	exon8	c.G448A	p.V150M	.	.	.
LOC57653	57653	broad.mit.edu	36	9	99122305	99122305	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020893	exon11	c.C1288T	p.L430L	.	.	.
IL1RAPL2	26280	broad.mit.edu	36	X	104871331	104871331	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017416	exon8	c.C1039T	p.R347C	.	.	.
ZNF645	158506	broad.mit.edu	36	X	22201982	22201982	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152577	exon1	c.C953T	p.T318M	.	.	.
CXorf36	79742	broad.mit.edu	36	X	44895898	44895898	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_176819	exon5	c.G1245A	p.T415T	.	.	.