Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
ADAM12	8038	broad.mit.edu	36	10	127716900	127716900	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003474	exon20	c.G2258A	p.R753H	.	.	.
TCERG1L	256536	broad.mit.edu	36	10	132834771	132834771	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_174937	exon7	c.G1177C	p.E393Q	.	.	.
HK1	3098	broad.mit.edu	36	10	70799348	70799348	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033498	exon10	c.G849A	p.R283R	.	.	.
LARP4B	23185	broad.mit.edu	36	10	872390	872390	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015155	exon7	c.C703T	p.R235C	.	.	.
ZEB1	6935	broad.mit.edu	36	10	31849467	31849467	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001174093	exon6	c.1138delG	p.G380fs	.	.	.
C11orf63	79864	broad.mit.edu	36	11	122300886	122300886	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024806	exon4	c.C936T	p.I312I	.	.	.
ANO5	203859	broad.mit.edu	36	11	22240372	22240372	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001142649	exon16	c.C1749A	p.G583G	.	.	.
OR5AS1	219447	broad.mit.edu	36	11	55555407	55555407	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001001921	exon1	c.G937A	p.E313K	.	.	.
OR52N4	390072	broad.mit.edu	36	11	5733181	5733181	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005175	exon1	c.A635G	p.D212G	.	.	.
TMEM132A	54972	broad.mit.edu	36	11	60460615	60460615	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017870	exon11	c.G2735A	p.R912Q	.	.	.
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35A	p.G12D	 KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.
KCNA1	3736	broad.mit.edu	36	12	4891010	4891010	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000217	exon2	c.C205T	p.R69C	.	.	.
SCN8A	6334	broad.mit.edu	36	12	50487332	50487332	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014191	exon27	c.G5795A	p.R1932Q	.	.	.
GAS2L3	283431	broad.mit.edu	36	12	99541826	99541826	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_174942	exon10	c.C1112T	p.S371F	.	.	.
FRY	10129	broad.mit.edu	36	13	31603925	31603925	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_023037	exon8	c.G833A	p.R278Q	.	.	.
FREM2	341640	broad.mit.edu	36	13	38160697	38160697	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_207361	exon1	c.C1216T	p.R406C	.	.	.
SLC24A4	123041	broad.mit.edu	36	14	92022775	92022775	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153646	exon14	c.G1435A	p.G479R	.	.	.
EVL	51466	broad.mit.edu	36	14	99633641	99633641	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016337	exon3	c.G251T	p.R84L	.	.	.
CHRFAM7A	89832	broad.mit.edu	36	15	28446933	28446933	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_139320	exon9	c.G700A	p.G234R	.	.	.
RYR3	6263	broad.mit.edu	36	15	31663915	31663915	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001036	exon15	c.A1601C	p.N534T	.	.	.
MEGF11	84465	broad.mit.edu	36	15	64203369	64203369	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032445	exon3	c.C122T	p.S41L	.	.	.
CYP1A1	1543	broad.mit.edu	36	15	72802258	72802258	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000499	exon2	c.T234G	p.I78M	.	.	.
LINGO1	84894	broad.mit.edu	36	15	75694976	75694976	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032808	exon2	c.G328A	p.V110M	.	.	.
NUBP1	4682	broad.mit.edu	36	16	10763145	10763145	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002484	exon9	c.G748A	p.G250R	.	.	.
KCTD13	253980	broad.mit.edu	36	16	29842014	29842014	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178863	exon2	c.C412T	p.Q138X	.	.	.
NLRC5	84166	broad.mit.edu	36	16	55639024	55639024	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032206	exon23	c.G3405A	p.P1135P	.	.	.
WDR90	197335	broad.mit.edu	36	16	656917	656917	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145294	exon40	c.G5016A	p.K1672K	.	.	.
FAM65A	79567	broad.mit.edu	36	16	66137615	66137615	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001193522	exon21	c.G3554A	p.R1185Q	.	.	.
DNAH9	1770	broad.mit.edu	36	17	11543823	11543823	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001372	exon23	c.C4923A	p.F1641L	.	.	.
B9D1	27077	broad.mit.edu	36	17	19204249	19204249	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015681	exon2	c.G109A	p.G37S	.	.	.
SLFN11	91607	broad.mit.edu	36	17	30714049	30714049	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001104589	exon3	c.C891A	p.L297L	.	.	.
NR1D1	9572	broad.mit.edu	36	17	35506954	35506954	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021724	exon2	c.C260T	p.S87L	.	.	.
C17orf85	55421	broad.mit.edu	36	17	3671311	3671311	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001114118	exon9	c.G981A	p.S327S	.	.	.
TEX14	56155	broad.mit.edu	36	17	54018413	54018413	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198393	exon18	c.G2818T	p.A940S	.	.	.
CACNG5	27091	broad.mit.edu	36	17	62307213	62307213	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014404	exon3	c.G361A	p.G121R	.	.	.
CLEC10A	10462	broad.mit.edu	36	17	6922126	6922126	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182906	exon3	c.G98A	p.R33H	.	.	.
EFNB3	1949	broad.mit.edu	36	17	7552075	7552075	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001406	exon2	c.G197A	p.R66Q	.	.	.
KDM6B	23135	broad.mit.edu	36	17	7696591	7696591	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001080424	exon20	c.G4522A	p.V1508I	.	.	.
GUCY2D	3000	broad.mit.edu	36	17	7850570	7850570	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000180	exon4	c.C1191T	p.D397D	.	.	.
SMAD4	4089	broad.mit.edu	36	18	46845805	46845805	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005359	exon9	c.T970C	p.C324R	 SMAD4,thyroid,NS,Substitution - Missense,-1 	.	.
POLI	11201	broad.mit.edu	36	18	50058157	50058157	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_007195	exon4	c.C493G	p.L165V	.	.	.
DOK6	220164	broad.mit.edu	36	18	65496044	65496044	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152721	exon4	c.C384T	p.A128A	.	.	.
ADNP2	22850	broad.mit.edu	36	18	75996398	75996398	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014913	exon4	c.C2111T	p.P704L	.	.	.
CACNA1A	773	broad.mit.edu	36	19	13201931	13201931	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001174080	exon36	c.C5497T	p.R1833C	.	.	.
OR7A10	390892	broad.mit.edu	36	19	14813086	14813086	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005190	exon1	c.G604T	p.A202S	.	.	.
HAPLN4	404037	broad.mit.edu	36	19	19232814	19232814	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_023002	exon3	c.G292A	p.V98I	.	.	.
TSHZ3	57616	broad.mit.edu	36	19	36460255	36460255	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020856	exon2	c.G2284T	p.A762S	.	.	.
ATP4A	495	broad.mit.edu	36	19	40741361	40741361	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000704	exon9	c.C1323T	p.R441R	.	.	.
FEM1A	55527	broad.mit.edu	36	19	4744598	4744598	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018708	exon1	c.G1732A	p.D578N	.	.	.
PSG7	5676	broad.mit.edu	36	19	48125672	48125672	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002783	exon3	c.C471A	p.N157K	.	.	.
PPP2R1A	5518	broad.mit.edu	36	19	57408141	57408141	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014225	exon6	c.G773A	p.R258H	.	.	.
ZNF320	162967	broad.mit.edu	36	19	58076624	58076624	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_207333	exon4	c.C567A	p.Y189X	.	.	.
RANBP3	8498	broad.mit.edu	36	19	5892695	5892695	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003624	exon5	c.T343C	p.Y115H	.	.	.
NLRP5	126206	broad.mit.edu	36	19	61230203	61230203	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_153447	exon7	c.A792T	p.Q264H	.	.	.
PEG3	5178	broad.mit.edu	36	19	62019970	62019970	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001146186	exon7	c.G1652T	p.S551I	.	.	.
VAV1	7409	broad.mit.edu	36	19	6780894	6780894	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005428	exon14	c.C1363T	p.R455W	.	.	.
ADAR	103	broad.mit.edu	36	1	152841102	152841102	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015841	exon2	c.G640A	p.D214N	.	.	.
OR6K3	391114	broad.mit.edu	36	1	156953755	156953755	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001005327	exon1	c.T775G	p.L259V	.	.	.
IGSF21	84966	broad.mit.edu	36	1	18575918	18575918	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032880	exon8	c.G1139A	p.R380Q	.	.	.
TAS1R2	80834	broad.mit.edu	36	1	19053627	19053627	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152232	exon3	c.G924A	p.P308P	.	.	.
KCNH1	3756	broad.mit.edu	36	1	208923454	208923454	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002238	exon11	c.C2681T	p.T894M	.	.	.
CENPF	1063	broad.mit.edu	36	1	212881602	212881602	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016343	exon12	c.A3298G	p.M1100V	.	.	.
OBSCN	84033	broad.mit.edu	36	1	226541226	226541226	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_052843	exon35	c.G9407A	p.R3136Q	.	.	.
OR2M4	26245	broad.mit.edu	36	1	246469730	246469730	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017504	exon1	c.C877T	p.R293C	.	.	.
GRIK3	2899	broad.mit.edu	36	1	37080106	37080106	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000831	exon10	c.C1348T	p.R450W	.	.	.
RPE65	6121	broad.mit.edu	36	1	68683105	68683105	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000329	exon4	c.G295A	p.V99I	.	.	.
MACROD2	140733	broad.mit.edu	36	20	13924423	13924423	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_080676	exon1	c.A14G	p.N5S	.	.	.
PPP1R16B	26051	broad.mit.edu	36	20	36980455	36980455	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001172735	exon10	c.C1310T	p.T437M	.	.	.
NCOA5	57727	broad.mit.edu	36	20	44125552	44125552	+	Missense_Mutation	SNP	C	T	T	rs35315891	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020967	exon7	c.G1004A	p.R335H	.	.	.
ZBTB46	140685	broad.mit.edu	36	20	61892093	61892093	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025224	exon2	c.G462A	p.T154T	.	.	.
HAO1	54363	broad.mit.edu	36	20	7842842	7842842	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017545	exon3	c.C514T	p.R172C	.	.	.
ETS2	2114	broad.mit.edu	36	21	39113310	39113310	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005239	exon8	c.C825A	p.D275E	.	.	.
CBS	875	broad.mit.edu	36	21	43359532	43359532	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001178008	exon5	c.C341T	p.A114V	.	.	.
C22orf42	150297	broad.mit.edu	36	22	30878575	30878575	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001010859	exon3	c.G346T	p.V116L	.	.	.
MYH9	4627	broad.mit.edu	36	22	35010428	35010428	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002473	exon39	c.C5559T	p.D1853D	.	.	.
SULT4A1	25830	broad.mit.edu	36	22	42553294	42553294	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014351	exon7	c.G775A	p.V259I	.	.	.
CELSR1	9620	broad.mit.edu	36	22	45238396	45238396	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014246	exon2	c.C4055T	p.P1352L	.	.	.
IL18R1	8809	broad.mit.edu	36	2	102358853	102358853	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003855	exon4	c.G523A	p.A175T	.	.	.
LRP2	4036	broad.mit.edu	36	2	169809614	169809614	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004525	exon22	c.C3265T	p.R1089C	.	.	.
TTN	7273	broad.mit.edu	36	2	179109390	179109390	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003319	exon185	c.A73134G	p.Q24378Q	.	.	.
GTF3C3	9330	broad.mit.edu	36	2	197372509	197372509	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012086	exon1	c.G72T	p.R24R	.	.	.
ABCA12	26154	broad.mit.edu	36	2	215553529	215553529	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_173076	exon31	c.C4663A	p.L1555I	.	.	.
KIAA1486	57624	broad.mit.edu	36	2	226155695	226155695	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020864	exon4	c.G1318A	p.V440I	.	.	.
EIF4E2	9470	broad.mit.edu	36	2	233129453	233129453	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004846	exon2	c.G104A	p.R35Q	.	.	.
PRR21	643905	broad.mit.edu	36	2	240630669	240630669	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080835	exon1	c.C404G	p.P135R	.	.	.
KIF1A	547	broad.mit.edu	36	2	241306199	241306199	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004321	exon46	c.C4971T	p.S1657S	.	.	.
ANO7	50636	broad.mit.edu	36	2	241795740	241795740	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001891	exon11	c.C1221T	p.S407S	.	.	.
SEPT2	4735	broad.mit.edu	36	2	241924131	241924131	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001008491	exon6	c.C286T	p.R96C	.	.	.
PSME4	23198	broad.mit.edu	36	2	53974410	53974410	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014614	exon35	c.G3943C	p.D1315H	.	.	.
ADD2	119	broad.mit.edu	36	2	70787035	70787035	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001185054	exon3	c.C14T	p.T5M	.	.	.
NCAPH	23397	broad.mit.edu	36	2	96373685	96373685	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015341	exon6	c.G711A	p.R237R	.	.	.
AFF3	3899	broad.mit.edu	36	2	99565693	99565693	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001025108	exon16	c.C2867T	p.T956M	.	.	.
IFT80	57560	broad.mit.edu	36	3	161481170	161481170	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001190242	exon14	c.C1232T	p.T411I	.	.	.
PIK3CA	5290	broad.mit.edu	36	3	180418785	180418785	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006218	exon10	c.G1633A	p.E545K	 PIK3CA,urinary_tract,bladder,Substitution - Missense,0 	.	.
UBXN7	26043	broad.mit.edu	36	3	197573839	197573839	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015562	exon9	c.A951C	p.E317D	.	.	.
CHL1	10752	broad.mit.edu	36	3	344855	344855	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006614	exon5	c.C203T	p.S68L	.	.	.
GORASP1	64689	broad.mit.edu	36	3	39117331	39117331	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031899	exon5	c.G477A	p.K159K	.	.	.
CCDC13	152206	broad.mit.edu	36	3	42769184	42769184	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_144719	exon4	c.G400A	p.A134T	.	.	.
CELSR3	1951	broad.mit.edu	36	3	48674142	48674142	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001407	exon1	c.G930A	p.A310A	.	.	.
ROBO1	6091	broad.mit.edu	36	3	78759168	78759168	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002941	exon26	c.G3868A	p.D1290N	.	.	.
OR5AC2	81050	broad.mit.edu	36	3	99289132	99289132	+	Silent	SNP	C	G	G	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_054106	exon1	c.C426G	p.L142L	.	.	.
ANK2	287	broad.mit.edu	36	4	114498713	114498713	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001148	exon38	c.G9490T	p.E3164X	.	.	.
FAT4	79633	broad.mit.edu	36	4	126591295	126591295	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024582	exon9	c.C9674G	p.T3225R	.	.	.
MAB21L2	10586	broad.mit.edu	36	4	151724251	151724251	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006439	exon1	c.G620T	p.G207V	.	.	.
LRBA	987	broad.mit.edu	36	4	151993296	151993296	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006726	exon23	c.A3016T	p.N1006Y	.	.	.
NPY2R	4887	broad.mit.edu	36	4	156354727	156354727	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000910	exon2	c.G186T	p.L62F	.	.	.
ODZ3	55714	broad.mit.edu	36	4	183895219	183895219	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001080477	exon16	c.G3232T	p.V1078F	.	.	.
F11	2160	broad.mit.edu	36	4	187434013	187434013	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000128	exon6	c.T564G	p.F188L	.	.	.
HTT	3064	broad.mit.edu	36	4	3210075	3210075	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002111	exon65	c.G8995A	p.G2999R	.	.	.
PPEF2	5470	broad.mit.edu	36	4	77016671	77016671	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006239	exon11	c.G1113T	p.R371S	.	.	.
IBSP	3381	broad.mit.edu	36	4	88942552	88942552	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004967	exon2	c.A15C	p.L5F	.	.	.
CTNND2	1501	broad.mit.edu	36	5	11417899	11417899	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001332	exon8	c.C1281T	p.R427R	.	.	.
CCDC112	153733	broad.mit.edu	36	5	114648469	114648469	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001040440	exon2	c.T153C	p.R51R	.	.	.
ACSL6	23305	broad.mit.edu	36	5	131324154	131324154	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001009185	exon19	c.G1917C	p.K639N	.	.	.
TRPC7	57113	broad.mit.edu	36	5	135720509	135720509	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020389	exon2	c.G466A	p.E156K	.	.	.
PCDHA6	56142	broad.mit.edu	36	5	140189863	140189863	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018909	exon1	c.C2003T	p.S668L	.	.	.
KIAA0141	9812	broad.mit.edu	36	5	141297046	141297046	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001142603	exon11	c.G1249A	p.A417T	.	.	.
PDE6A	5145	broad.mit.edu	36	5	149267084	149267084	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000440	exon7	c.T1049C	p.V350A	.	.	.
FBXL7	23194	broad.mit.edu	36	5	15989744	15989744	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012304	exon4	c.G925A	p.V309I	.	.	.
PRLR	5618	broad.mit.edu	36	5	35125443	35125443	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000949	exon3	c.C37T	p.L13L	.	.	.
APC	324	broad.mit.edu	36	5	112203092	112203092	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.3848delC	p.T1283fs	 APC,stomach,NS,Substitution - Missense,0 	.	.
GRIK2	2898	broad.mit.edu	36	6	102444327	102444327	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021956	exon11	c.A1644G	p.T548T	.	.	.
RSPO3	84870	broad.mit.edu	36	6	127518219	127518219	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032784	exon4	c.A577G	p.T193A	.	.	.
AKAP12	9590	broad.mit.edu	36	6	151712071	151712071	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005100	exon4	c.G852A	p.P284P	.	.	.
OPRM1	4988	broad.mit.edu	36	6	154454115	154454115	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000914	exon3	c.G979C	p.G327R	.	.	.
SOD2	6648	broad.mit.edu	36	6	160026032	160026032	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001024466	exon3	c.C250T	p.R84C	.	.	.
KIF13A	63971	broad.mit.edu	36	6	17872946	17872946	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_022113	exon39	c.G4792T	p.G1598C	.	.	.
ZNF323	64288	broad.mit.edu	36	6	28405142	28405142	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145909	exon6	c.C298T	p.R100W	.	.	.
MUC21	394263	broad.mit.edu	36	6	31062326	31062326	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001010909	exon2	c.C395T	p.A132V	.	.	.
PRPH2	5961	broad.mit.edu	36	6	42797684	42797684	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000322	exon1	c.C367T	p.R123W	.	.	.
PRIM2	5558	broad.mit.edu	36	6	57354815	57354815	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000947	exon7	c.T583G	p.F195V	.	.	.
COL12A1	1303	broad.mit.edu	36	6	75897377	75897377	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004370	exon36	c.G5978A	p.R1993Q	.	.	.
COL12A1	1303	broad.mit.edu	36	6	75908525	75908525	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004370	exon27	c.G4900A	p.V1634I	.	.	.
GABRR2	2570	broad.mit.edu	36	6	90030867	90030867	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002043	exon8	c.C1144T	p.R382W	.	.	.
BTN2A3	54718	broad.mit.edu	36	6	26534487	26534487	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ACTL6B	51412	broad.mit.edu	36	7	100085597	100085597	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016188	exon5	c.C467T	p.A156V	.	.	.
SLC12A9	56996	broad.mit.edu	36	7	100294425	100294425	+	De_novo_Start_OutOfFrame	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020246	exon6	c.G790A	p.V264M	.	.	.
PLOD3	8985	broad.mit.edu	36	7	100642531	100642531	+	De_novo_Start_InFrame	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001084	exon9	c.C1005T	p.N335N	.	.	.
LRRC4	64101	broad.mit.edu	36	7	127457643	127457643	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_022143	exon2	c.G287A	p.R96H	.	.	.
HIPK2	28996	broad.mit.edu	36	7	138932198	138932198	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_022740	exon12	c.G2522A	p.R841H	.	.	.
SDK1	221935	broad.mit.edu	36	7	4119554	4119554	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152744	exon24	c.C3542T	p.T1181M	.	.	.
ZPBP	11055	broad.mit.edu	36	7	50068184	50068184	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001159878	exon4	c.A431T	p.K144I	.	.	.
COL28A1	340267	broad.mit.edu	36	7	7483291	7483291	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001037763	exon14	c.G1210A	p.G404R	.	.	.
GRM3	2913	broad.mit.edu	36	7	86306159	86306159	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000840	exon4	c.C1393T	p.R465X	.	.	.
SPDYE3	441272	broad.mit.edu	36	7	99752692	99752692	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004351	exon8	c.C1324T	p.R442C	.	.	.
XKR6	286046	broad.mit.edu	36	8	10819712	10819712	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_173683	exon2	c.G803A	p.R268Q	.	.	.
TUSC3	7991	broad.mit.edu	36	8	15650318	15650318	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178234	exon9	c.G1001A	p.R334H	.	.	.
NKX3-1	4824	broad.mit.edu	36	8	23594858	23594858	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006167	exon2	c.C526T	p.R176C	.	.	.
STC1	6781	broad.mit.edu	36	8	23764971	23764971	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003155	exon3	c.G280C	p.E94Q	.	.	.
CLU	1191	broad.mit.edu	36	8	27522382	27522382	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001171138	exon3	c.A269T	p.K90M	.	.	.
NRG1	3084	broad.mit.edu	36	8	32582742	32582742	+	De_novo_Start_InFrame	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001159995	exon2	c.C301T	p.R101X	.	.	.
ADRB3	155	broad.mit.edu	36	8	37942904	37942904	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000025	exon1	c.G241A	p.A81T	.	.	.
TRPA1	8989	broad.mit.edu	36	8	73143985	73143985	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_007332	exon3	c.C271A	p.L91M	.	.	.
DCAF4L2	138009	broad.mit.edu	36	8	88954470	88954470	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152418	exon1	c.C846A	p.G282G	.	.	.
DCAF4L2	138009	broad.mit.edu	36	8	88954833	88954833	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152418	exon1	c.G483A	p.A161A	.	.	.
KIF12	113220	broad.mit.edu	36	9	115898495	115898495	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138424	exon5	c.G317A	p.R106H	.	.	.
PAPPA	5069	broad.mit.edu	36	9	118068073	118068073	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002581	exon8	c.G2849A	p.G950D	.	.	.
OR1K1	392392	broad.mit.edu	36	9	124603043	124603043	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_080859	exon1	c.T821G	p.V274G	.	.	.
PKN3	29941	broad.mit.edu	36	9	130517549	130517549	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013355	exon15	c.C1797T	p.D599D	.	.	.
KIAA1045	23349	broad.mit.edu	36	9	34961399	34961399	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015297	exon2	c.G104A	p.R35Q	.	.	.
TLN1	7094	broad.mit.edu	36	9	35711667	35711667	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006289	exon10	c.C1082T	p.A361V	.	.	.
RORB	6096	broad.mit.edu	36	9	76467286	76467286	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006914	exon6	c.G836A	p.R279Q	.	.	.
SETX	23064	broad.mit.edu	36	9	134136995	134136996	+	Frame_Shift_Del	DEL	CA	-	-	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	CA	CA	CA	-	CA	CA	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015046	exon24	c.7121_7122del	p.2374_2374del	.	.	.
FMR1NB	158521	broad.mit.edu	36	X	146914148	146914148	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152578	exon5	c.G704A	p.R235Q	.	.	.
PLXNB3	5365	broad.mit.edu	36	X	152696656	152696656	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001163257	exon33	c.G5390A	p.R1797Q	.	.	.
SSX5	6758	broad.mit.edu	36	X	47938574	47938574	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_175723	exon4	c.G215A	p.R72H	.	.	.
PCDH11Y	83259	broad.mit.edu	36	Y	5665403	5665403	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032973	exon5	c.C3443T	p.P1148L	.	.	.