Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target ERLIN1 10613 broad.mit.edu 36 10 101905896 101905896 + Silent SNP G T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001100626 exon10 c.C741A p.I247I . . . C10orf47 254427 broad.mit.edu 36 10 11934200 11934200 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_153256 exon2 c.C118T p.R40C . . . CXCL12 6387 broad.mit.edu 36 10 44194135 44194135 + Silent SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001178134 exon3 c.G222A p.P74P . . . DKK1 22943 broad.mit.edu 36 10 53746193 53746193 + Missense_Mutation SNP A C C novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_012242 exon3 c.A539C p.H180P . . . ITIH2 3698 broad.mit.edu 36 10 7831169 7831169 + Missense_Mutation SNP G T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_002216 exon21 c.G2707T p.D903Y . . . SLIT1 6585 broad.mit.edu 36 10 98792710 98792710 + Missense_Mutation SNP G T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_003061 exon20 c.C2102A p.P701H . . . FXYD6 53826 broad.mit.edu 36 11 117217747 117217747 + Silent SNP G A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001164837 exon5 c.C141T p.V47V . . . HYOU1 10525 broad.mit.edu 36 11 118428577 118428577 + Silent SNP G A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006389 exon9 c.C969T p.N323N . . . OR10G9 219870 broad.mit.edu 36 11 123399605 123399605 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001001953 exon1 c.C676T p.R226W . . . OR10G8 219869 broad.mit.edu 36 11 123406463 123406463 + Silent SNP T G G novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001004464 exon1 c.T924G p.S308S . . . UBQLN3 50613 broad.mit.edu 36 11 5485401 5485401 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_017481 exon2 c.C1964T p.S655L . . . CDHR5 53841 broad.mit.edu 36 11 611883 611883 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_031264 exon4 c.G334A p.V112M . . . OR10A4 283297 broad.mit.edu 36 11 6855142 6855142 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_207186 exon1 c.C688T p.P230S . . . GRM5 2915 broad.mit.edu 36 11 87881684 87881684 + Silent SNP G A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000842 exon9 c.C3267T p.I1089I . . . NOS1 4842 broad.mit.edu 36 12 116194699 116194699 + Silent SNP G A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000620 exon10 c.C1713T p.A571A . . . KRAS 3845 broad.mit.edu 36 12 25289551 25289551 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004985 exon2 c.G35A p.G12D KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 . . FGFR1OP2 26127 broad.mit.edu 36 12 27001907 27001907 + Silent SNP G A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001171888 exon4 c.G360A p.P120P . . . KCNA5 3741 broad.mit.edu 36 12 5024070 5024070 + Missense_Mutation SNP G T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_002234 exon1 c.G496T p.D166Y . . . ACVR1B 91 broad.mit.edu 36 12 50661085 50661085 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_020327 exon4 c.G490A p.G164S . . . CHD4 1108 broad.mit.edu 36 12 6571844 6571844 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001273 exon19 c.G2924A p.R975H . . . C12orf12 196477 broad.mit.edu 36 12 89872174 89872174 + Silent SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_152638 exon1 c.G477A p.P159P . . . ING1 3621 broad.mit.edu 36 13 110170026 110170026 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_198219 exon2 c.C586T p.R196X . . . FRY 10129 broad.mit.edu 36 13 31766604 31766604 + Missense_Mutation SNP T C C novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_023037 exon60 c.T8680C p.S2894P . . . OR4K15 81127 broad.mit.edu 36 14 19514223 19514223 + Missense_Mutation SNP C A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001005486 exon1 c.C706A p.L236I . . . EAPP 55837 broad.mit.edu 36 14 34055289 34055289 + Missense_Mutation SNP T C C novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_018453 exon6 c.A836G p.N279S . . . PCNX 22990 broad.mit.edu 36 14 70638545 70638545 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_014982 exon31 c.C5675T p.A1892V . . . C14orf148 122945 broad.mit.edu 36 14 76943737 76943737 + Silent SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_138791 exon3 c.G354A p.E118E . . . SEMA6D 80031 broad.mit.edu 36 15 45844501 45844501 + Silent SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_153619 exon13 c.C1383T p.N461N . . . SHC4 399694 broad.mit.edu 36 15 47042162 47042162 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_203349 exon1 c.C343T p.P115S . . . CIITA 4261 broad.mit.edu 36 16 10909365 10909365 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_000246 exon11 c.C2515T p.R839C . . . PHKB 5257 broad.mit.edu 36 16 46106978 46106978 + Missense_Mutation SNP T G G novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 T T T G T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001031835 exon7 c.T538G p.S180A . . . BRD7 29117 broad.mit.edu 36 16 48925026 48925026 + Missense_Mutation SNP T C C novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_013263 exon8 c.A971G p.E324G . . . HYDIN 54768 broad.mit.edu 36 16 69619232 69619232 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_032821 exon20 c.G2816A p.R939Q . . . GIT1 28964 broad.mit.edu 36 17 24926993 24926993 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_014030 exon16 c.C1715T p.P572L . . . CCL7 6354 broad.mit.edu 36 17 29622382 29622382 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006273 exon2 c.C181T p.R61W . . . UNC45B 146862 broad.mit.edu 36 17 30537441 30537441 + Missense_Mutation SNP G T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_173167 exon20 c.G2546T p.W849L . . . GJC1 10052 broad.mit.edu 36 17 40237694 40237694 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005497 exon3 c.C1018T p.R340W . . . CAMTA2 23125 broad.mit.edu 36 17 4823843 4823843 + Missense_Mutation SNP G T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_015099 exon9 c.C1498A p.P500T . . . ABCA10 10349 broad.mit.edu 36 17 64661638 64661638 + Missense_Mutation SNP C A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_080282 exon33 c.G3894T p.M1298I . . . PGS1 9489 broad.mit.edu 36 17 73911456 73911456 + Missense_Mutation SNP G T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_024419 exon7 c.G1093T p.D365Y . . . RPTOR 57521 broad.mit.edu 36 17 76410607 76410607 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020761 exon8 c.G902A p.R301H . . . SOX9 6662 broad.mit.edu 36 17 67631860 67631860 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 T T T - T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_000346 exon3 c.1267delT p.F423fs . . . CCDC11 220136 broad.mit.edu 36 18 46007970 46007970 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_145020 exon8 c.C1324T p.R442C . . . CETN1 1068 broad.mit.edu 36 18 570537 570537 + Silent SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004066 exon1 c.C129T p.D43D . . . PDE4A 5141 broad.mit.edu 36 19 10438591 10438591 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001111309 exon15 c.C1772T p.P591L . . . ZNF101 94039 broad.mit.edu 36 19 19651274 19651274 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_033204 exon4 c.G476A p.R159H . . . ZNF99 7652 broad.mit.edu 36 19 22743040 22743040 + Missense_Mutation SNP T A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001080409 exon3 c.A196T p.I66F . . . PLIN4 729359 broad.mit.edu 36 19 4463245 4463245 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001080400 exon3 c.C1685T p.A562V . . . LRRC4B 94030 broad.mit.edu 36 19 55713087 55713087 + Silent SNP G A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001080457 exon3 c.C1695T p.L565L . . . ZNF175 7728 broad.mit.edu 36 19 56783188 56783188 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_007147 exon5 c.G1792A p.G598S . . . LILRB3 11025 broad.mit.edu 36 19 59437937 59437937 + Silent SNP G A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_024318 exon3 c.C132T p.P44P . . . COL5A3 50509 broad.mit.edu 36 19 9949142 9949142 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_015719 exon43 c.C3133T p.R1045C . . . SLC6A17 388662 broad.mit.edu 36 1 110538773 110538773 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001010898 exon9 c.C1349T p.T450M . . . CLCN6 1185 broad.mit.edu 36 1 11821008 11821008 + Silent SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001286 exon21 c.C2325T p.A775A . . . PDE4DIP 9659 broad.mit.edu 36 1 143579417 143579417 + Silent SNP G A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001198832 exon35 c.C5061T p.T1687T . . . ATAD3A 55210 broad.mit.edu 36 1 1449567 1449567 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018188 exon11 c.G1285A p.V429M . . . FLG 2312 broad.mit.edu 36 1 150546390 150546390 + Silent SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002016 exon3 c.G7596A p.S2532S . . . HSPA6 3310 broad.mit.edu 36 1 159762695 159762695 + Missense_Mutation SNP A C C novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002155 exon1 c.A1623C p.K541N . . . FASLG 356 broad.mit.edu 36 1 170901652 170901652 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000639 exon4 c.C719T p.A240V . . . PARP1 142 broad.mit.edu 36 1 224620352 224620352 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001618 exon18 c.G2431A p.A811T PARP1,breast,NS,Substitution - coding silent,+2 . . PGBD5 79605 broad.mit.edu 36 1 228579901 228579901 + Silent SNP G A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_024554 exon1 c.C90T p.P30P . . . HTR1D 3352 broad.mit.edu 36 1 23392500 23392500 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000864 exon1 c.C800T p.S267L . . . ZMYM6 9204 broad.mit.edu 36 1 35225585 35225585 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_007167 exon16 c.G3685A p.D1229N . . . ALG6 29929 broad.mit.edu 36 1 63652368 63652368 + Missense_Mutation SNP A C C novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_013339 exon10 c.A865C p.K289Q . . . PTGER3 5733 broad.mit.edu 36 1 71285526 71285526 + Missense_Mutation SNP G T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_198715 exon1 c.C323A p.P108Q . . . DPYD 1806 broad.mit.edu 36 1 97754050 97754050 + Missense_Mutation SNP T G G novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 T T T G T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_000110 exon13 c.A1560C p.E520D . . . CD93 22918 broad.mit.edu 36 20 23013956 23013956 + Missense_Mutation SNP G C C novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_012072 exon1 c.C874G p.R292G . . . PHACTR3 116154 broad.mit.edu 36 20 57751584 57751584 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_080672 exon2 c.G146A p.R49H . . . ZNF512B 57473 broad.mit.edu 36 20 62068058 62068058 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020713 exon5 c.C914T p.P305L . . . PCNT 5116 broad.mit.edu 36 21 46599799 46599799 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_006031 exon12 c.G1766A p.S589N . . . TOM1 10043 broad.mit.edu 36 22 34056356 34056356 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001135730 exon7 c.G647A p.C216Y . . . FBLN1 2192 broad.mit.edu 36 22 44337780 44337780 + Missense_Mutation SNP G C C novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001996 exon15 c.G2022C p.K674N . . . TBC1D8 11138 broad.mit.edu 36 2 100990980 100990980 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001102426 exon20 c.C3158T p.P1053L . . . ST6GAL2 84620 broad.mit.edu 36 2 106789675 106789675 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001142351 exon6 c.G1481A p.R494H . . . LCT 3938 broad.mit.edu 36 2 136291848 136291848 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002299 exon6 c.C1240T p.R414C . . . OTOF 9381 broad.mit.edu 36 2 26551778 26551778 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_194323 exon8 c.G838A p.D280N . . . CLIP4 79745 broad.mit.edu 36 2 29220191 29220191 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_024692 exon7 c.C761T p.A254V . . . POLR1A 25885 broad.mit.edu 36 2 86112110 86112110 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_015425 exon30 c.G4432A p.A1478T . . . PIK3CA 5290 broad.mit.edu 36 3 180418785 180418785 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006218 exon10 c.G1633A p.E545K PIK3CA,urinary_tract,bladder,Substitution - Missense,0 . . TGFBR2 7048 broad.mit.edu 36 3 30688647 30688647 + Missense_Mutation SNP T C C novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_003242 exon4 c.T968C p.L323P . . . UBA3 9039 broad.mit.edu 36 3 69188458 69188458 + Silent SNP T G G novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_198195 exon13 c.A1036C p.R346R . . . ADCY5 111 broad.mit.edu 36 3 124648972 124648972 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_183357 exon1 c.1111delC p.Q371fs . . . MANBA 4126 broad.mit.edu 36 4 103780042 103780042 + Silent SNP G C C novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005908 exon14 c.C1890G p.V630V . . . CASP6 839 broad.mit.edu 36 4 110838358 110838358 + Silent SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001226 exon3 c.G99A p.P33P . . . FBXW7 55294 broad.mit.edu 36 4 153468834 153468834 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_018315 exon8 c.G1154A p.R385H FBXW7,large_intestine,NS,Substitution - Missense,0 . . DCHS2 54798 broad.mit.edu 36 4 155377438 155377438 + Missense_Mutation SNP G T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_017639 exon25 c.C6451A p.H2151N . . . ZNF721 170960 broad.mit.edu 36 4 427166 427166 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_133474 exon3 c.G1090T p.E364X . . . YTHDC1 91746 broad.mit.edu 36 4 68885737 68885737 + Silent SNP A C C novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001031732 exon4 c.T486G p.R162R . . . PDHA2 5161 broad.mit.edu 36 4 96980348 96980348 + Silent SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005390 exon1 c.C24T p.R8R . . . APC 324 broad.mit.edu 36 5 112201603 112201603 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001127511 exon14 c.C2359T p.R787X APC,large_intestine,right,Substitution - Nonsense,0 . . APC 324 broad.mit.edu 36 5 112203538 112203538 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001127511 exon14 c.C4294T p.R1432X APC,large_intestine,rectum,Substitution - Nonsense,0 . . FBN2 2201 broad.mit.edu 36 5 127701696 127701696 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001999 exon27 c.C3490T p.R1164C . . . SLC4A9 83697 broad.mit.edu 36 5 139722790 139722790 + Missense_Mutation SNP C A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_031467 exon7 c.C917A p.T306K . . . PCDHAC1 56135 broad.mit.edu 36 5 140287202 140287202 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_031882 exon1 c.G541A p.E181K . . . PCDHGA3 56112 broad.mit.edu 36 5 140703963 140703963 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_018916 exon1 c.C179T p.A60V . . . WWC1 23286 broad.mit.edu 36 5 167815002 167815002 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001161661 exon19 c.C2722T p.R908W . . . ASCC3 10973 broad.mit.edu 36 6 101206165 101206165 + Missense_Mutation SNP G T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006828 exon19 c.C3067A p.Q1023K . . . HACE1 57531 broad.mit.edu 36 6 105346089 105346089 + Missense_Mutation SNP T C C novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020771 exon11 c.A1057G p.R353G . . . TAAR2 9287 broad.mit.edu 36 6 132980625 132980625 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001033080 exon2 c.C413T p.A138V . . . TIAM2 26230 broad.mit.edu 36 6 155492062 155492062 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_012454 exon3 c.G13A p.D5N . . . FNDC1 84624 broad.mit.edu 36 6 159573945 159573945 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_032532 exon11 c.C2411T p.T804M . . . DUSP22 56940 broad.mit.edu 36 6 256894 256894 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020185 exon3 c.G70T p.E24X . . . OR10C1 442194 broad.mit.edu 36 6 29516426 29516426 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_013941 exon1 c.C655T p.R219C . . . ZNF318 24149 broad.mit.edu 36 6 43430399 43430399 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014345 exon4 c.G2651A p.R884H . . . LMBRD1 55788 broad.mit.edu 36 6 70467409 70467409 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_018368 exon12 c.G1157A p.R386Q . . . COL12A1 1303 broad.mit.edu 36 6 75889771 75889771 + Missense_Mutation SNP C G G novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_004370 exon43 c.G6941C p.R2314P . . . SNX14 57231 broad.mit.edu 36 6 86313815 86313815 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020468 exon9 c.C800T p.P267L . . . TMEM168 64418 broad.mit.edu 36 7 112212001 112212001 + Nonsense_Mutation SNP A T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_022484 exon2 c.T116A p.L39X . . . AMZ1 155185 broad.mit.edu 36 7 2708962 2708962 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_133463 exon3 c.G385A p.V129I . . . RSPH10B 222967 broad.mit.edu 36 7 6764014 6764014 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_173565 exon3 c.C181T p.R61C . . . KIAA1324L 222223 broad.mit.edu 36 7 86406076 86406076 + Silent SNP G A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_152748 exon6 c.C483T p.D161D . . . DLC1 10395 broad.mit.edu 36 8 12992160 12992160 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_182643 exon15 c.C4046T p.S1349L . . . MYOM2 9172 broad.mit.edu 36 8 2080299 2080299 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_003970 exon37 c.C4385T p.A1462V . . . GSR 2936 broad.mit.edu 36 8 30657966 30657966 + Missense_Mutation SNP T G G novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001195102 exon11 c.A1329C p.E443D . . . RP1 6101 broad.mit.edu 36 8 55696226 55696226 + Silent SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006269 exon2 c.C147T p.G49G . . . FAM110B 90362 broad.mit.edu 36 8 59222273 59222273 + Silent SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_147189 exon5 c.C930T p.S310S . . . ZFHX4 79776 broad.mit.edu 36 8 77924314 77924314 + Silent SNP T C C novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_024721 exon8 c.T3657C p.C1219C . . . ASTN2 23245 broad.mit.edu 36 9 119016767 119016767 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_014010 exon3 c.C706T p.R236C . . . TSC1 7248 broad.mit.edu 36 9 134769012 134769012 + Silent SNP T C C novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001162426 exon17 c.A2052G p.S684S . . . ANAPC2 29882 broad.mit.edu 36 9 139195184 139195184 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_013366 exon8 c.G1487A p.R496Q . . . PCSK5 5125 broad.mit.edu 36 9 77963787 77963787 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001190482 exon12 c.G1499A p.R500H . . . SLC28A3 64078 broad.mit.edu 36 9 86097482 86097482 + Missense_Mutation SNP A T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_022127 exon11 c.T944A p.V315D . . . ARMCX1 51309 broad.mit.edu 36 X 100695003 100695003 + Missense_Mutation SNP C A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_016608 exon4 c.C434A p.P145Q . . . ODZ1 10178 broad.mit.edu 36 X 123855882 123855882 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_014253 exon3 c.G479A p.G160D . . . ENOX2 10495 broad.mit.edu 36 X 129627333 129627333 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_182314 exon10 c.C1066T p.R356W . . . GPR112 139378 broad.mit.edu 36 X 135307768 135307768 + Silent SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_153834 exon20 c.C8247T p.T2749T . . . GABRA3 2556 broad.mit.edu 36 X 151264723 151264723 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_000808 exon3 c.G248A p.R83Q . . . PTCHD1 139411 broad.mit.edu 36 X 23320584 23320584 + Missense_Mutation SNP G T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_173495 exon3 c.G1028T p.G343V . . . MXRA5 25878 broad.mit.edu 36 X 3238955 3238955 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_015419 exon7 c.C7289T p.T2430M . . . CLCN5 1184 broad.mit.edu 36 X 49737805 49737805 + Silent SNP C A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001127899 exon11 c.C1095A p.I365I . . . GDPD2 54857 broad.mit.edu 36 X 69566532 69566532 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001171193 exon11 c.C964T p.R322W . . . TAF1 6872 broad.mit.edu 36 X 70515521 70515521 + Missense_Mutation SNP A T T novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_138923 exon8 c.A1272T p.K424N . . . ATP7A 538 broad.mit.edu 36 X 77175963 77175963 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_000052 exon17 c.G3499A p.A1167T . . . PCDH11X 27328 broad.mit.edu 36 X 90977688 90977688 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03F-01A-11W-A096-10 TCGA-AA-A03F-11A-12W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032968 exon1 c.G529A p.E177K . . .