Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID HDAC9 9734 hgsc.bcm.edu 36 7 18672621 18672621 + Missense_Mutation SNP A A T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce ABCA13 154664 hgsc.bcm.edu 36 7 48229633 48229633 + Silent SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce ZNF479 90827 hgsc.bcm.edu 36 7 57198321 57198321 + Missense_Mutation SNP T T C novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce EIF4H 7458 hgsc.bcm.edu 36 7 73240049 73240049 + Missense_Mutation SNP A A G novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce C7orf58 79974 hgsc.bcm.edu 36 7 120491580 120491580 + Missense_Mutation SNP G G A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce CNTNAP2 26047 hgsc.bcm.edu 36 7 146436253 146436253 + Missense_Mutation SNP T T C novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce NOS3 342977 hgsc.bcm.edu 36 7 150329430 150329430 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce ABCB8 11194 hgsc.bcm.edu 36 7 150356597 150356597 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce BMP2 650 hgsc.bcm.edu 36 20 6698897 6698897 + Missense_Mutation SNP T T G novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce BFSP1 631 hgsc.bcm.edu 36 20 17423039 17423039 + Missense_Mutation SNP G G A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce EIF6 3692 hgsc.bcm.edu 36 20 33331159 33331159 + Silent SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce PTPRT 11122 hgsc.bcm.edu 36 20 40143967 40143967 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce DIDO1 11083 hgsc.bcm.edu 36 20 60983229 60983229 + Silent SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce APOBEC3B 9582 hgsc.bcm.edu 36 22 37717529 37717529 + Missense_Mutation SNP C C A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce PNPLA5 150379 hgsc.bcm.edu 36 22 42608082 42608082 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce NUP50 10762 hgsc.bcm.edu 36 22 43959060 43959060 + Missense_Mutation SNP A A G novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce OR4K1 79544 hgsc.bcm.edu 36 14 19473742 19473742 + Missense_Mutation SNP T T C novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce TTLL5 254173 hgsc.bcm.edu 36 14 75288999 75288999 + Missense_Mutation SNP G G A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce ACER1 125981 hgsc.bcm.edu 36 19 6258229 6258229 + Nonsense_Mutation SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce ZNF653 115950 hgsc.bcm.edu 36 19 11458656 11458656 + Silent SNP G G A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce ZNF607 84775 hgsc.bcm.edu 36 19 42881874 42881874 + Missense_Mutation SNP C C A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce WDR87 83889 hgsc.bcm.edu 36 19 43070636 43070636 + Missense_Mutation SNP G G A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce ZNF223 7766 hgsc.bcm.edu 36 19 49262429 49262429 + Missense_Mutation SNP T T G novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce CCDC8 83987 hgsc.bcm.edu 36 19 51606865 51606865 + Missense_Mutation SNP G G T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce PNMAL2 57469 hgsc.bcm.edu 36 19 51689023 51689023 + Nonsense_Mutation SNP C C A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce VSIG10L 0 hgsc.bcm.edu 36 19 56533974 56533974 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce ZNF528 84436 hgsc.bcm.edu 36 19 57610369 57610369 + Missense_Mutation SNP T T A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce NLRP9 338321 hgsc.bcm.edu 36 19 60920027 60920027 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce NLRP4 147945 hgsc.bcm.edu 36 19 61061447 61061447 + Silent SNP G G A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce CSMD1 64478 hgsc.bcm.edu 36 8 3044696 3044696 + Silent SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce CNOT7 29883 hgsc.bcm.edu 36 8 17139135 17139135 + Nonsense_Mutation SNP C C A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce ADAM7 8756 hgsc.bcm.edu 36 8 24405334 24405334 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce NSMAF 8439 hgsc.bcm.edu 36 8 59670732 59670732 + Silent SNP T T C novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce MSC 51312 hgsc.bcm.edu 36 8 72918869 72918869 + Silent SNP G G A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce ZFHX4 79776 hgsc.bcm.edu 36 8 77779659 77779659 + Missense_Mutation SNP G G A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce CSMD3 114788 hgsc.bcm.edu 36 8 113362611 113362611 + Missense_Mutation SNP C C A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce TRPS1 7227 hgsc.bcm.edu 36 8 116685702 116685702 + Missense_Mutation SNP C C A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce L1TD1 54596 hgsc.bcm.edu 36 1 62448545 62448545 + Missense_Mutation SNP G G A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce LEPR 54741 hgsc.bcm.edu 36 1 65875070 65875070 + Missense_Mutation SNP G G T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce GBP4 115361 hgsc.bcm.edu 36 1 89431594 89431594 + Missense_Mutation SNP G G T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce PRMT6 55170 hgsc.bcm.edu 36 1 107401823 107401823 + Silent SNP G G A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce MAGI3 260425 hgsc.bcm.edu 36 1 113998006 113998006 + Silent SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce HRNR 388697 hgsc.bcm.edu 36 1 150459470 150459470 + Missense_Mutation SNP G G T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce FLG 2312 hgsc.bcm.edu 36 1 150552421 150552421 + Missense_Mutation SNP G G A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce KPRP 448834 hgsc.bcm.edu 36 1 151000223 151000223 + Missense_Mutation SNP A A C novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce PYHIN1 149628 hgsc.bcm.edu 36 1 157213126 157213126 + Missense_Mutation SNP C C A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce CD84 8832 hgsc.bcm.edu 36 1 158801894 158801894 + Silent SNP T T C novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce DCAF6 0 hgsc.bcm.edu 36 1 166299621 166299621 + Missense_Mutation SNP G G A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce HMCN1 83872 hgsc.bcm.edu 36 1 184342662 184342662 + Silent SNP A A G novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce TPR 7175 hgsc.bcm.edu 36 1 184580186 184580186 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce NFASC 23114 hgsc.bcm.edu 36 1 203219851 203219851 + Silent SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce OBSCN 84033 hgsc.bcm.edu 36 1 226616968 226616968 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce PLD5 200150 hgsc.bcm.edu 36 1 240343860 240343860 + Missense_Mutation SNP A A G novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce WEE1 7465 hgsc.bcm.edu 36 11 9554198 9554198 + Missense_Mutation SNP A A G novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce CTR9 9646 hgsc.bcm.edu 36 11 10742271 10742271 + Missense_Mutation SNP G G A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce SLC6A5 9152 hgsc.bcm.edu 36 11 20632894 20632894 + Silent SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce C11orf9 745 hgsc.bcm.edu 36 11 61294440 61294440 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce RPS6KA4 8986 hgsc.bcm.edu 36 11 63892185 63892185 + Silent SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce TBC1D10C 374403 hgsc.bcm.edu 36 11 66929461 66929461 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce DLG2 4355 hgsc.bcm.edu 36 11 84543251 84543251 + Silent SNP T T C novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce NOX4 50507 hgsc.bcm.edu 36 11 88773046 88773046 + Missense_Mutation SNP T T A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce FAT3 120114 hgsc.bcm.edu 36 11 92174290 92174290 + Silent SNP C C A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce PGR 5241 hgsc.bcm.edu 36 11 100503952 100503952 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce MMP8 4317 hgsc.bcm.edu 36 11 102092273 102092273 + Missense_Mutation SNP A A G novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce MMP13 4322 hgsc.bcm.edu 36 11 102320236 102320236 + Missense_Mutation SNP A A G novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce C11orf57 55216 hgsc.bcm.edu 36 11 111457916 111457916 + Missense_Mutation SNP A A C novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce CD3D 915 hgsc.bcm.edu 36 11 117716413 117716413 + Missense_Mutation SNP T T C novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce GRAMD1B 57476 hgsc.bcm.edu 36 11 122984645 122984645 + Missense_Mutation SNP G G A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce ZNF391 346157 hgsc.bcm.edu 36 6 27476591 27476591 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce OR12D2 26529 hgsc.bcm.edu 36 6 29472705 29472705 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce PKHD1 5314 hgsc.bcm.edu 36 6 51932679 51932679 + Missense_Mutation SNP T T A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce DST 667 hgsc.bcm.edu 36 6 56530246 56530246 + Missense_Mutation SNP T T C novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce ENPP1 5167 hgsc.bcm.edu 36 6 132212840 132212840 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce SYNE1 23345 hgsc.bcm.edu 36 6 152803991 152803991 + Silent SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce MAP3K4 4216 hgsc.bcm.edu 36 6 161390309 161390309 + Missense_Mutation SNP A A T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce DNAH9 1770 hgsc.bcm.edu 36 17 11781537 11781537 + Silent SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce STAC2 342667 hgsc.bcm.edu 36 17 34622173 34622173 + Missense_Mutation SNP G G C novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce KRTAP4-12 83755 hgsc.bcm.edu 36 17 36533583 36533583 + Silent SNP A A G novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce KRT17 3872 hgsc.bcm.edu 36 17 37032242 37032242 + Missense_Mutation SNP T T C novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce C17orf57 124989 hgsc.bcm.edu 36 17 42793837 42793837 + Silent SNP T T C novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce WFIKKN2 124857 hgsc.bcm.edu 36 17 46272337 46272337 + Missense_Mutation SNP T T C novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce TBX4 9496 hgsc.bcm.edu 36 17 56912050 56912050 + Missense_Mutation SNP C C A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce SCN4A 6329 hgsc.bcm.edu 36 17 59373966 59373966 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce CCDC46 201134 hgsc.bcm.edu 36 17 61278553 61278553 + Nonsense_Mutation SNP G G C novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce BPTF 2186 hgsc.bcm.edu 36 17 63374353 63374353 + Missense_Mutation SNP G G A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce GPR97 222487 hgsc.bcm.edu 36 16 56277107 56277107 + Silent SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce CTCF 10664 hgsc.bcm.edu 36 16 66203014 66203014 + Nonsense_Mutation SNP A A T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce DPEP3 64180 hgsc.bcm.edu 36 16 66571534 66571534 + Missense_Mutation SNP G G A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce PKD1L3 342372 hgsc.bcm.edu 36 16 70524836 70524836 + Missense_Mutation SNP A A C novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce ADAT1 23536 hgsc.bcm.edu 36 16 74204239 74204239 + Missense_Mutation SNP G G A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce TRAPPC2L 51693 hgsc.bcm.edu 36 16 87452627 87452627 + Missense_Mutation SNP G G A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce CCDC102B 79839 hgsc.bcm.edu 36 18 64715507 64715507 + Silent SNP A A G novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce SALL3 27164 hgsc.bcm.edu 36 18 74853087 74853087 + Silent SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce CAND2 23066 hgsc.bcm.edu 36 3 12824768 12824768 + Missense_Mutation SNP G G C novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce KAT2B 8850 hgsc.bcm.edu 36 3 20142547 20142547 + Missense_Mutation SNP C C A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce COL7A1 1294 hgsc.bcm.edu 36 3 48577870 48577870 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce RFT1 91869 hgsc.bcm.edu 36 3 53108465 53108465 + Missense_Mutation SNP C C A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce ROBO2 6092 hgsc.bcm.edu 36 3 77229917 77229917 + Missense_Mutation SNP G G A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce KALRN 8997 hgsc.bcm.edu 36 3 125596848 125596848 + Silent SNP G G A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce EEFSEC 60678 hgsc.bcm.edu 36 3 129542833 129542833 + Missense_Mutation SNP G G T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce EPHB1 2047 hgsc.bcm.edu 36 3 136449967 136449967 + Silent SNP G G A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce ZIC1 7545 hgsc.bcm.edu 36 3 148611532 148611532 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce GPR149 344758 hgsc.bcm.edu 36 3 155538218 155538218 + Silent SNP A A G novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce PLCH1 23007 hgsc.bcm.edu 36 3 156754665 156754665 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce MASP1 5648 hgsc.bcm.edu 36 3 188452188 188452188 + Missense_Mutation SNP C C A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce WNK1 65125 hgsc.bcm.edu 36 12 865054 865054 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce VWF 7450 hgsc.bcm.edu 36 12 5996057 5996057 + Missense_Mutation SNP G G T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce CLEC4C 170482 hgsc.bcm.edu 36 12 7790236 7790236 + Missense_Mutation SNP A A G novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce C12orf35 55196 hgsc.bcm.edu 36 12 32027720 32027720 + Missense_Mutation SNP A A G novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce DIP2B 57609 hgsc.bcm.edu 36 12 49360788 49360788 + Missense_Mutation SNP A A G novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce ERBB3 2065 hgsc.bcm.edu 36 12 54778900 54778900 + Missense_Mutation SNP A A G novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce AGAP2 116986 hgsc.bcm.edu 36 12 56409798 56409798 + Silent SNP G G A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce LRRIQ1 84125 hgsc.bcm.edu 36 12 83964011 83964011 + Missense_Mutation SNP C C A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce FAM71C 196472 hgsc.bcm.edu 36 12 98566188 98566188 + Silent SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce ATXN2 6311 hgsc.bcm.edu 36 12 110375019 110375019 + Missense_Mutation SNP G G A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce C12orf51 283450 hgsc.bcm.edu 36 12 111155250 111155250 + Silent SNP G G T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce NCOR2 9612 hgsc.bcm.edu 36 12 123470525 123470525 + Silent SNP G G A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce POTEB 339010 hgsc.bcm.edu 36 15 19336076 19336076 + Silent SNP G G A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce UNC13C 440279 hgsc.bcm.edu 36 15 52329894 52329894 + Silent SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce ITGA11 22801 hgsc.bcm.edu 36 15 66415184 66415184 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce LINGO1 84894 hgsc.bcm.edu 36 15 75695083 75695083 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce ADAMTS7 11173 hgsc.bcm.edu 36 15 76876112 76876112 + Missense_Mutation SNP G G A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce ARHGAP6 395 hgsc.bcm.edu 36 X 11592801 11592801 + Silent SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce PCDH11X 83259 hgsc.bcm.edu 36 X 91760335 91760335 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce OCRL 4952 hgsc.bcm.edu 36 X 128518998 128518998 + Missense_Mutation SNP G G A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce MCF2 4168 hgsc.bcm.edu 36 X 138524741 138524741 + Missense_Mutation SNP A A G novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce DRD5 1816 hgsc.bcm.edu 36 4 9393385 9393385 + Missense_Mutation SNP G G A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce ARAP2 116984 hgsc.bcm.edu 36 4 35799329 35799329 + Nonsense_Mutation SNP G G T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce CEP135 9662 hgsc.bcm.edu 36 4 56552991 56552991 + Silent SNP A A T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce AASDH 132949 hgsc.bcm.edu 36 4 56945084 56945084 + Missense_Mutation SNP T T A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce DDIT4L 115265 hgsc.bcm.edu 36 4 101328005 101328005 + Missense_Mutation SNP C C A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce KIAA1109 84162 hgsc.bcm.edu 36 4 123316481 123316481 + Missense_Mutation SNP G G A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce PCDH18 54510 hgsc.bcm.edu 36 4 138661652 138661652 + Missense_Mutation SNP T T G novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce TTC29 83894 hgsc.bcm.edu 36 4 148015340 148015340 + Missense_Mutation SNP T T G novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce SPOCK3 50859 hgsc.bcm.edu 36 4 168070442 168070442 + Missense_Mutation SNP C C A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce SNTG2 54221 hgsc.bcm.edu 36 2 1291332 1291332 + Silent SNP G G A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce TTC32 130502 hgsc.bcm.edu 36 2 19960362 19960362 + Missense_Mutation SNP A A C novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce FAM179A 165186 hgsc.bcm.edu 36 2 29075756 29075756 + Missense_Mutation SNP C C G novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce HEATR5B 54497 hgsc.bcm.edu 36 2 37087821 37087821 + Silent SNP T T C novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce TTC7A 57217 hgsc.bcm.edu 36 2 47132444 47132444 + Missense_Mutation SNP G G T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce KCMF1 56888 hgsc.bcm.edu 36 2 85126745 85126745 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce IFIH1 64135 hgsc.bcm.edu 36 2 162852934 162852934 + Missense_Mutation SNP T T C novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce HOXD13 3239 hgsc.bcm.edu 36 2 176666588 176666588 + Missense_Mutation SNP G G A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce TTN 7273 hgsc.bcm.edu 36 2 179112511 179112511 + Silent SNP A A G novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce ZSWIM2 151112 hgsc.bcm.edu 36 2 187411985 187411985 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce ANKAR 150709 hgsc.bcm.edu 36 2 190314409 190314409 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce CPS1 1589 hgsc.bcm.edu 36 2 211167491 211167491 + Silent SNP C C A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce FN1 2335 hgsc.bcm.edu 36 2 215977421 215977421 + Silent SNP G G A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce INHA 3623 hgsc.bcm.edu 36 2 220148214 220148214 + Missense_Mutation SNP G G T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce LRRFIP1 9208 hgsc.bcm.edu 36 2 238312667 238312667 + Silent SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce RNPEPL1 57140 hgsc.bcm.edu 36 2 241163613 241163613 + Missense_Mutation SNP T T C novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce DENND4C 55667 hgsc.bcm.edu 36 9 19336477 19336477 + Missense_Mutation SNP T T C novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce FAM75D1 0 hgsc.bcm.edu 36 9 83799748 83799748 + Missense_Mutation SNP C C A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce OMD 4958 hgsc.bcm.edu 36 9 94218966 94218966 + Silent SNP A A G novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce ABCA2 20 hgsc.bcm.edu 36 9 139029340 139029340 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce MTUS2 0 hgsc.bcm.edu 36 13 28497396 28497396 + Silent SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce NBEA 26960 hgsc.bcm.edu 36 13 35121812 35121812 + Silent SNP G G A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce MED4 29079 hgsc.bcm.edu 36 13 47552030 47552030 + Silent SNP G G A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce NEK3 4752 hgsc.bcm.edu 36 13 51608274 51608274 + Missense_Mutation SNP A A C novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce PCDH9 5101 hgsc.bcm.edu 36 13 66699283 66699283 + Missense_Mutation SNP C C A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce DZIP1 22873 hgsc.bcm.edu 36 13 95083564 95083564 + Missense_Mutation SNP C C A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce KDELC1 79070 hgsc.bcm.edu 36 13 102239518 102239518 + Silent SNP A A G novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce F7 2155 hgsc.bcm.edu 36 13 112821012 112821012 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce PROZ 8858 hgsc.bcm.edu 36 13 112874019 112874019 + Nonsense_Mutation SNP G G T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce NEBL 10529 hgsc.bcm.edu 36 10 21114747 21114747 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce NEBL 10529 hgsc.bcm.edu 36 10 21141816 21141816 + Silent SNP G G A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce UNC5B 219699 hgsc.bcm.edu 36 10 72715170 72715170 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce CDH23 64072 hgsc.bcm.edu 36 10 73233159 73233159 + Silent SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce TTC18 118491 hgsc.bcm.edu 36 10 74721749 74721749 + Missense_Mutation SNP A A T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce TTC18 118491 hgsc.bcm.edu 36 10 74778216 74778216 + Missense_Mutation SNP G G A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce ZMYND17 118490 hgsc.bcm.edu 36 10 74855581 74855581 + Missense_Mutation SNP G G A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce ADK 132 hgsc.bcm.edu 36 10 76099971 76099971 + Missense_Mutation SNP T T C novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce PTEN 5728 hgsc.bcm.edu 36 10 89682910 89682910 + Silent SNP T T C novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce PTEN 5728 hgsc.bcm.edu 36 10 89682920 89682920 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce TNKS2 80351 hgsc.bcm.edu 36 10 93569701 93569701 + Missense_Mutation SNP G G C novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce PAX2 5076 hgsc.bcm.edu 36 10 102556234 102556234 + Missense_Mutation SNP G G A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce GRK5 2869 hgsc.bcm.edu 36 10 121186289 121186289 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce C10orf120 399814 hgsc.bcm.edu 36 10 124447348 124447348 + Missense_Mutation SNP T T A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce UROS 7390 hgsc.bcm.edu 36 10 127467432 127467432 + Missense_Mutation SNP A A G novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce SLC6A18 348932 hgsc.bcm.edu 36 5 1296696 1296696 + Silent SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce FASTKD3 79072 hgsc.bcm.edu 36 5 7920791 7920791 + Missense_Mutation SNP G G C novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce CDH6 1004 hgsc.bcm.edu 36 5 31358881 31358881 + Silent SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce AGXT2 64902 hgsc.bcm.edu 36 5 35048889 35048889 + Missense_Mutation SNP G G A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce PRLR 5618 hgsc.bcm.edu 36 5 35101072 35101072 + Missense_Mutation SNP G G A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce NNT 23530 hgsc.bcm.edu 36 5 43691785 43691785 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce CDC20B 166979 hgsc.bcm.edu 36 5 54456451 54456451 + Silent SNP G G A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce MAP3K1 4214 hgsc.bcm.edu 36 5 56210574 56210574 + Missense_Mutation SNP G G C novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce MAP3K1 4214 hgsc.bcm.edu 36 5 56210612 56210612 + Missense_Mutation SNP G G A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce POLK 51426 hgsc.bcm.edu 36 5 74916372 74916372 + Missense_Mutation SNP T T C novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce PCSK1 5122 hgsc.bcm.edu 36 5 95772406 95772406 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce APC 324 hgsc.bcm.edu 36 5 112203031 112203031 + Missense_Mutation SNP T T A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce PCDHA5 56143 hgsc.bcm.edu 36 5 140182986 140182986 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce PCDHA11 56138 hgsc.bcm.edu 36 5 140230681 140230681 + Silent SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce PCDHA12 56137 hgsc.bcm.edu 36 5 140237541 140237541 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce PCDHB4 56131 hgsc.bcm.edu 36 5 140483324 140483324 + Silent SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce PCDHGA12 26025 hgsc.bcm.edu 36 5 140792347 140792347 + Missense_Mutation SNP G G A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce RBM27 54439 hgsc.bcm.edu 36 5 145611621 145611621 + Silent SNP T T A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce GABRA1 2554 hgsc.bcm.edu 36 5 161255319 161255319 + Missense_Mutation SNP A A T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce FAM196B 0 hgsc.bcm.edu 36 5 169242326 169242326 + Silent SNP C C T novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce RUFY1 80230 hgsc.bcm.edu 36 5 178953206 178953206 + Missense_Mutation SNP T T C novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce OR2Y1 134083 hgsc.bcm.edu 36 5 180099177 180099177 + Missense_Mutation SNP G G C novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce ARID1A 8289 hgsc.bcm.edu 36 1 26974025 26974025 + Frame_Shift_Del DEL C C - novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce CD2 914 hgsc.bcm.edu 36 1 117099070 117099070 + Frame_Shift_Del DEL A A - novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce LCE4A 199834 hgsc.bcm.edu 36 1 150948313 150948314 + In_Frame_Ins INS - - GGCTGCTGTAGCTCTGGC novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce MUC4 4585 hgsc.bcm.edu 36 3 196992981 196993028 + In_Frame_Del DEL CTGAGGAAGGGCTAGTGACAGGAAGAGGCATGGTGTCACCTGTGGATA CTGAGGAAGGGCTAGTGACAGGAAGAGGCATGGTGTCACCTGTGGATA - novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 CTGAGGAAGGGCTAGTGACAGGAAGAGGCATGGTGTCACCTGTGGATA CTGAGGAAGGGCTAGTGACAGGAAGAGGCATGGTGTCACCTGTGGATA Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce TLL1 7092 hgsc.bcm.edu 36 4 167179952 167179952 + Frame_Shift_Del DEL T T - novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce RP1L1 94137 hgsc.bcm.edu 36 8 10505091 10505093 + In_Frame_Del DEL TCC TCC - novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 TCC TCC Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce KIF20B 9585 hgsc.bcm.edu 36 10 91487882 91487883 + In_Frame_Ins INS - - TAAAAG novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce C13orf40 0 hgsc.bcm.edu 36 13 102179997 102179997 + Frame_Shift_Del DEL A A - novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce DDHD1 80821 hgsc.bcm.edu 36 14 52689230 52689231 + In_Frame_Ins INS - - GCCGCC novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce BRD7 29117 hgsc.bcm.edu 36 16 48915028 48915029 + Frame_Shift_Ins INS - - C novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce NCOA3 8202 hgsc.bcm.edu 36 20 45695680 45695681 + Frame_Shift_Ins INS - - A novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce NEFH 4744 hgsc.bcm.edu 36 22 28215599 28215604 + In_Frame_Del DEL AGGAAG AGGAAG - novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 AGGAAG AGGAAG Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce ARMCX1 51309 hgsc.bcm.edu 36 X 100695121 100695122 + Frame_Shift_Ins INS - - TGGCC novel unknown TCGA-CA-5254-01A-21D-1835-10 TCGA-CA-5254-10A-01D-1835-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ef2929b3-7e0e-4817-8809-587f5dcbcdb9 e068a440-5fdb-4107-bf11-76821ab5ccce