Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID TTotCov TVarCov NTotCov NVarCov TVarRat NVarRat dbSNP_AF dbSNP_PopFreq dbSNP_Strength COSMIC_Codon COSMIC_Gene COSMIC_Gene_Freq COSMIC_Site_Freq Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target Confidence Algorithm E2F1 1869 hgsc.bcm.edu 37 20 32267687 32267690 + Frame_Shift_Del DEL CCGT CCGT - novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 CCGT CCGT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 91.0 12.0 125.0 0.0 0.131868 0 . . none . E2F1 41 . NM_005225 exon3 c.444_447del p.148_149del . . PASS Atlas-Indel TNFAIP3 7128 hgsc.bcm.edu 37 6 138198239 138198240 + Frame_Shift_Del DEL AG AG - novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 AG AG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 165.0 12.0 286.0 0.0 0.0727273 0 . . none . TNFAIP3 340 . NM_001270508 exon6 c.831_832del p.277_278del . . PASS Atlas-Indel SCN9A 6335 hgsc.bcm.edu 37 2 167055184 167055185 + Frame_Shift_Ins INS - - T novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 243.0 22.0 372.0 0.0 0.090535 0 . . none . SCN9A 296 . NM_002977 exon27 c.5932_5933insA p.X1978delinsI . . PASS Atlas-Indel ARID1A 8289 hgsc.bcm.edu 37 1 27101417 27101417 + Frame_Shift_Del DEL C C - novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 119.0 28.0 124.0 0.0 0.235294 0 . . none . ARID1A 842 . NM_006015 exon18 c.4698delG p.R1566fs . . PASS Atlas-Indel MLL2 8085 hgsc.bcm.edu 37 12 49436376 49436377 + Frame_Shift_Ins INS - - G novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 66.0 11.0 87.0 0.0 0.166667 0 . . none . MLL2 1173 . NM_003482 exon27 c.5835_5836insC p.P1945fs . . PASS Atlas-Indel CTSH 1512 hgsc.bcm.edu 37 15 79221796 79221797 + Frame_Shift_Ins INS - - T novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 129.0 12.0 226.0 0.0 0.0930233 0 . . none . CTSH 23 . NM_004390 exon8 c.588_589insA p.N196fs . . PASS Atlas-Indel OR2T34 127068 hgsc.bcm.edu 37 1 248737510 248737511 + Frame_Shift_Ins INS - - A novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 230.0 39.0 333.0 0.0 0.169565 0 . . none OR2T34,NS,haematopoietic_neoplasm,-1,2 OR2T34 72 2 NM_001001821 exon1 c.549_550insT p.F183fs . . PASS Atlas-Indel RIMS1 22999 hgsc.bcm.edu 37 6 73023228 73023228 + Missense_Mutation SNP A A G novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 78.0 19.0 93.0 0.0 0.24359 0 . . none . RIMS1 278 . NM_014989 exon28 c.A3983G p.Q1328R AAGATCAGTACAG . PASS Atlas-SNP SMAD9 4093 hgsc.bcm.edu 37 13 37453460 37453460 + Missense_Mutation SNP C C T novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 52.0 6.0 81.0 0.0 0.115385 0 . . none . SMAD9 91 . NM_005905 exon2 c.G367A p.E123K ACACTTCTTTCTG . PASS Atlas-SNP KCNN4 3783 hgsc.bcm.edu 37 19 44278489 44278489 + Missense_Mutation SNP G G C novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 98.0 11.0 119.0 0.0 0.112245 0 . . none . KCNN4 37 . NM_002250 exon3 c.C538G p.R180G TGCTGCGGTAGGA . PASS Atlas-SNP IRF4 3662 hgsc.bcm.edu 37 6 394899 394899 + Missense_Mutation SNP T T C novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 46.0 8.0 55.0 0.0 0.173913 0 . . none IRF4_ENST00000380956,NS,carcinoma,-1,1 IRF4 65 1 NM_001195286 exon3 c.T295C p.C99R CTGCGGTGCGCTT . PASS Atlas-SNP KCTD3 51133 hgsc.bcm.edu 37 1 215751396 215751396 + Silent SNP C C T novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 184.0 23.0 297.0 0.0 0.125 0 . . none . KCTD3 101 . NM_016121 exon6 c.C369T p.V123V CAGTGTCCTTTTT . PASS Atlas-SNP FAT1 2195 hgsc.bcm.edu 37 4 187539303 187539303 + Missense_Mutation SNP G G T novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 103.0 14.0 151.0 0.0 0.135922 0 . . none . FAT1 500 . NM_005245 exon10 c.C8437A p.P2813T CATATGGACTAGA . PASS Atlas-SNP GPC1 2817 hgsc.bcm.edu 37 2 241401695 241401695 + Missense_Mutation SNP C C T novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 111.0 11.0 147.0 0.0 0.0990991 0 . . none . GPC1 32 . NM_002081 exon3 c.C413T p.A138V AGAACGCGAGGGC . PASS Atlas-SNP XRCC2 7516 hgsc.bcm.edu 37 7 152346254 152346254 + Nonsense_Mutation SNP C C A novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 35.0 5.0 59.0 0.0 0.142857 0 . . none . XRCC2 30 . NM_005431 exon3 c.G316T p.E106X TTATTTCTTCAGA . PASS Atlas-SNP HIST1H2BD 3017 hgsc.bcm.edu 37 6 26158776 26158776 + Missense_Mutation SNP T T C novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 105.0 14.0 163.0 0.0 0.133333 0 . . none . HIST1H2BD 45 . NM_021063 exon1 c.T379C p.X127Q TCCAAGTAACTTT . PASS Atlas-SNP NBEA 26960 hgsc.bcm.edu 37 13 35729913 35729913 + Silent SNP C C A novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 64.0 9.0 118.0 0.0 0.140625 0 . . none . NBEA 340 . NM_015678 exon19 c.C2448A p.I816I TCAGATCTTGACA . PASS Atlas-SNP PTBP1 5725 hgsc.bcm.edu 37 19 804886 804886 + Missense_Mutation SNP T T C novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 63.0 3.0 60.0 0.0 0.047619 0 . . none PTBP1,larynx,carcinoma,-2,1 PTBP1 43 1 NM_031990 exon7 c.T664C p.F222L AACCAGTTCCAGG . scavenged Atlas-SNP ZNF880 400713 hgsc.bcm.edu 37 19 52877609 52877609 + Missense_Mutation SNP G G A novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 138.0 13.0 118.0 0.0 0.0942029 0 . . none . ZNF880 45 . NM_001145434 exon3 c.G197A p.R66Q ATCCCCGGAATCT . PASS Atlas-SNP PTPRQ 374462 hgsc.bcm.edu 37 12 81046571 81046571 + Missense_Mutation SNP C C G novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 117.0 5.0 145.0 0.0 0.042735 0 . . none . PTPRQ 119 . NM_001145026 exon35 c.C5557G p.P1853A GATCTGCCTTGGA . PASS Atlas-SNP MYOM1 8736 hgsc.bcm.edu 37 18 3089200 3089200 + Missense_Mutation SNP C C A novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 316.0 52.0 492.0 0.0 0.164557 0 . . none . MYOM1 192 . NM_003803 exon29 c.G4109T p.G1370V CATTCACCAGTCA . PASS Atlas-SNP NKTR 4820 hgsc.bcm.edu 37 3 42674280 42674280 + Missense_Mutation SNP A A C novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 127.0 18.0 214.0 0.0 0.141732 0 . . none . NKTR 116 . NM_005385 exon9 c.A738C p.E246D TTCAGAAGAGCCA . PASS Atlas-SNP PCDH15 65217 hgsc.bcm.edu 37 10 55626476 55626476 + Silent SNP T T G novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 145.0 6.0 214.0 0.0 0.0413793 0 . . none . PCDH15 1715 . NM_001142763 exon28 c.A3658C p.R1220R AGGATCTCCTCAT . PASS Atlas-SNP CTNNA3 29119 hgsc.bcm.edu 37 10 67829199 67829199 + Missense_Mutation SNP G G T novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 150.0 16.0 260.0 0.0 0.106667 0 . . none . CTNNA3 401 . NM_013266 exon15 c.C2026A p.Q676K CAACTTGCTCAGC . PASS Atlas-SNP DLX4 1748 hgsc.bcm.edu 37 17 48051195 48051195 + Missense_Mutation SNP T T C novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 70.0 11.0 92.0 0.0 0.157143 0 . . none . DLX4 25 . NM_138281 exon3 c.T611C p.L204P CCTCCCTCTGGGA . PASS Atlas-SNP NAA25 80018 hgsc.bcm.edu 37 12 112516526 112516526 + Missense_Mutation SNP T T C novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 153.0 10.0 219.0 0.0 0.0653595 0 . . none . NAA25 105 . NM_024953 exon6 c.A497G p.E166G AGGTTTTCATCCT . PASS Atlas-SNP LRRC4 64101 hgsc.bcm.edu 37 7 127669744 127669744 + Missense_Mutation SNP T T C novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 110.0 17.0 135.0 0.0 0.154545 0 . . none . LRRC4 72 . NM_022143 exon2 c.A950G p.E317G ATATACTCTCGAA . PASS Atlas-SNP AGTR2 186 hgsc.bcm.edu 37 X 115304549 115304549 + Missense_Mutation SNP G G T novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 215.0 12.0 334.0 0.0 0.055814 0 . . none . AGTR2 62 . NM_000686 exon3 c.G1016T p.W339L TTACTTGGCTCCA . PASS Atlas-SNP HIST2H2BE 8349 hgsc.bcm.edu 37 1 149857825 149857825 + Silent SNP G G A novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 166.0 9.0 160.0 0.0 0.0542169 0 . . none . HIST2H2BE 33 . NM_003528 exon1 c.C366T p.Y122Y GCTGGTGTACTTG . PASS Atlas-SNP PIK3C2G 5288 hgsc.bcm.edu 37 12 18491371 18491371 + Silent SNP T T C novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 124.0 7.0 171.0 0.0 0.0564516 0 . . none . PIK3C2G 315 . NM_004570 exon9 c.T1284C p.Y428Y CGTGTATAATATT . PASS Atlas-SNP ABCB5 340273 hgsc.bcm.edu 37 7 20683092 20683092 + Missense_Mutation SNP A A G novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 149.0 17.0 214.0 0.0 0.114094 0 . . none . ABCB5 357 . NM_001163941 exon7 c.A515G p.D172G ACATTGACAAAAT . PASS Atlas-SNP PCSK5 5125 hgsc.bcm.edu 37 9 78923585 78923585 + Missense_Mutation SNP G G C novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 105.0 5.0 163.0 0.0 0.047619 0 . . none . PCSK5 329 . NM_001190482 exon28 c.G3548C p.C1183S AGCCTTGTCATTC . PASS Atlas-SNP SPEN 23013 hgsc.bcm.edu 37 1 16255388 16255388 + Nonsense_Mutation SNP G G T novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 66.0 6.0 92.0 0.0 0.0909091 0 . . none . SPEN 374 . NM_015001 exon11 c.G2653T p.E885X GTGAAAGAGAAAG . PASS Atlas-SNP NPAS3 64067 hgsc.bcm.edu 37 14 34270175 34270175 + Missense_Mutation SNP G G A novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 55.0 7.0 65.0 0.0 0.127273 0 . . none . NPAS3 266 . NM_001164749 exon12 c.G2662A p.A888T GGCGGCGCAGTGA . PASS Atlas-SNP SLC5A9 200010 hgsc.bcm.edu 37 1 48688529 48688529 + Missense_Mutation SNP G G C novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 135.0 9.0 163.0 0.0 0.0666667 0 . . none . SLC5A9 82 . NM_001135181 exon1 c.G121C p.V41L AGCGTGGTGGTCA . PASS Atlas-SNP ANKRD30A 91074 hgsc.bcm.edu 37 10 37508026 37508026 + Missense_Mutation SNP A A T novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 160.0 12.0 216.0 0.0 0.075 0 . . none . ANKRD30A 448 . NM_052997 exon34 c.A3218T p.E1073V AAAAGGAAAATAA . PASS Atlas-SNP EFNB1 1947 hgsc.bcm.edu 37 X 68058642 68058642 + Missense_Mutation SNP C C A novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 195.0 9.0 389.0 0.0 0.0461538 0 . . none . EFNB1 37 . NM_004429 exon2 c.C311A p.P104Q ATAGGCCAGAGCA . PASS Atlas-SNP SYNE1 23345 hgsc.bcm.edu 37 6 152768599 152768599 + Silent SNP C C G novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 69.0 7.0 105.0 0.0 0.101449 0 . . none . SYNE1 3227 . NM_033071 exon29 c.G3684C p.L1228L CTCTGACAGCAGC . PASS Atlas-SNP UHRF1BP1 54887 hgsc.bcm.edu 37 6 34825160 34825160 + Missense_Mutation SNP C C T rs201864059 TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 105.0 9.0 152.0 0.0 0.0857143 0 . . weak . UHRF1BP1 102 . NM_017754 exon12 c.C1486T p.R496W TGCAGTCGGAAAC . PASS Atlas-SNP PYY 5697 hgsc.bcm.edu 37 17 42030694 42030694 + Missense_Mutation SNP C C T novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 178.0 13.0 188.0 0.0 0.0730337 0 . . none . PYY 11 . NM_004160 exon5 c.G158A p.R53H TAGTGGCGCAGGG . PASS Atlas-SNP IGLL5 100423062 hgsc.bcm.edu 37 22 23230409 23230409 + Missense_Mutation SNP G G A novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 102.0 14.0 117.0 0.0 0.137255 0 . . none . IGLL5 26 . NM_001178126 exon1 c.G176A p.S59N GAAGCAGCCGATC . PASS Atlas-SNP OR4S1 256148 hgsc.bcm.edu 37 11 48328231 48328231 + Missense_Mutation SNP C C T novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 113.0 10.0 191.0 0.0 0.0884956 0 . . none . OR4S1 52 . NM_001004725 exon1 c.C457T p.H153Y TTCCTGCATTCCA . PASS Atlas-SNP KCNH1 3756 hgsc.bcm.edu 37 1 210856924 210856924 + Missense_Mutation SNP C C T novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 136.0 6.0 166.0 0.0 0.0441176 0 . . none . KCNH1 199 . NM_172362 exon11 c.G2669A p.R890H TCCAGGCGCAAGT . PASS Atlas-SNP HNF4G 3174 hgsc.bcm.edu 37 8 76471075 76471075 + Missense_Mutation SNP T T C novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 89.0 9.0 117.0 0.0 0.101124 0 . . none . HNF4G 111 . NM_004133 exon8 c.T896C p.M299T AGAACATGAGGTT . PASS Atlas-SNP F7 2155 hgsc.bcm.edu 37 13 113773002 113773002 + Missense_Mutation SNP A A G novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 100.0 22.0 122.0 0.0 0.22 0 . . none . F7 49 . NM_000131 exon9 c.A1081G p.N361D GTCCTCAACGTGC . PASS Atlas-SNP TSHZ3 57616 hgsc.bcm.edu 37 19 31768074 31768074 + Silent SNP G G A novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 90.0 19.0 125.0 0.0 0.211111 0 . . none . TSHZ3 549 . NM_020856 exon2 c.C2625T p.D875D GGCCCCGTCAATG . PASS Atlas-SNP MPEG1 219972 hgsc.bcm.edu 37 11 58979509 58979509 + Missense_Mutation SNP C C T novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 117.0 11.0 119.0 0.0 0.0940171 0 . . none . MPEG1 72 . NM_001039396 exon1 c.G830A p.S277N CCAATGCTCTGCA . PASS Atlas-SNP TRAM1L1 133022 hgsc.bcm.edu 37 4 118005633 118005633 + Missense_Mutation SNP G G A novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 179.0 18.0 225.0 0.0 0.100559 0 . . none . TRAM1L1 55 . NM_152402 exon1 c.C917T p.T306M TGGATCGTGCAAC . PASS Atlas-SNP BMP1 649 hgsc.bcm.edu 37 8 22052356 22052356 + Silent SNP G G A rs11552824 alternate_allele TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 70.0 10.0 84.0 0.0 0.142857 0 . . alt . BMP1 131 . NM_001199 exon12 c.G1563A p.T521T GAGCACGTCCAGC . PASS Atlas-SNP NPAT 4863 hgsc.bcm.edu 37 11 108044437 108044437 + Missense_Mutation SNP T T A novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 391.0 34.0 543.0 0.0 0.0869565 0 . . none . NPAT 124 . NM_002519 exon13 c.A1274T p.K425I GCCTTTTTCTGTA . PASS Atlas-SNP CDH3 1001 hgsc.bcm.edu 37 16 68716273 68716273 + Silent SNP C C T novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 63.0 8.0 76.0 0.0 0.126984 0 . . none . CDH3 68 . NM_001793 exon9 c.C1065T p.D355D TCTGGACGCCCCC . PASS Atlas-SNP CD36 948 hgsc.bcm.edu 37 7 80285936 80285936 + Silent SNP C C A novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 126.0 22.0 156.0 0.0 0.174603 0 . . none . CD36 185 . NM_001127444 exon2 c.C201A p.I67I TTGGATCTTTGAT . PASS Atlas-SNP UTS2B 257313 hgsc.bcm.edu 37 3 190999976 190999976 + Missense_Mutation SNP C C A novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 120.0 5.0 145.0 0.0 0.0416667 0 . . none . . . . NM_198152 exon5 c.G3T p.M1I CTTGTTCATGTTA . PASS Atlas-SNP FRAS1 80144 hgsc.bcm.edu 37 4 79328899 79328899 + Silent SNP C C G novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 98.0 8.0 121.0 0.0 0.0816327 0 . . none . FRAS1 779 . NM_001166133 exon31 c.C4212G p.T1404T AGCTACCCCCACC . PASS Atlas-SNP DDC 1644 hgsc.bcm.edu 37 7 50531011 50531011 + Missense_Mutation SNP G G A rs147562019 TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 165.0 14.0 218.0 0.0 0.0848485 0 G|1.000;A|0.000 0.000 weak . DDC 100 . NM_001082971 exon14 c.C1361T p.T454M TCCACCGTGCGAG . PASS Atlas-SNP TLX1 3195 hgsc.bcm.edu 37 10 102896618 102896618 + Missense_Mutation SNP A A G novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 124.0 18.0 144.0 0.0 0.145161 0 . . none TLX1,NS,carcinoma,-1,1 TLX1 20 1 NM_005521 exon3 c.A941G p.D314G GGTCTGACGACTC . PASS Atlas-SNP ITPRIPL2 162073 hgsc.bcm.edu 37 16 19126812 19126812 + Silent SNP G G A novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 44.0 4.0 54.0 0.0 0.0909091 0 . . none . ITPRIPL2 40 . NM_001034841 exon1 c.G1029A p.A343A GCGTGCGGAGGCA . PASS Atlas-SNP BICC1 80114 hgsc.bcm.edu 37 10 60549152 60549152 + Missense_Mutation SNP G G A rs192860241 bycluster;by1000genomes TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 155.0 10.0 221.0 0.0 0.0645161 0 G|1.000;A|0.000 0.000 strong BICC1,colon,carcinoma,+1,1 BICC1 121 1 NM_001080512 exon7 c.G731A p.R244H AACAGCGTTCCCG . PASS Atlas-SNP SLC6A14 11254 hgsc.bcm.edu 37 X 115588850 115588850 + Missense_Mutation SNP G G A novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 136.0 8.0 252.0 0.0 0.0588235 0 . . none . SLC6A14 56 . NM_007231 exon13 c.G1690A p.A564T GGAGTTGCTTTAG . PASS Atlas-SNP ATN1 1822 hgsc.bcm.edu 37 12 7045906 7045906 + Silent SNP G G A novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 46.0 5.0 58.0 0.0 0.108696 0 . . none . ATN1 95 . NM_001007026 exon5 c.G1476A p.Q492Q GCAGCAGCAGCAG . PASS Atlas-SNP MPEG1 219972 hgsc.bcm.edu 37 11 58978519 58978519 + Missense_Mutation SNP G G A rs376216311 alternate_allele TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 126.0 15.0 119.0 0.0 0.119048 0 . . alt . MPEG1 72 . NM_001039396 exon1 c.C1820T p.T607I GTATTGGTGGCAG . PASS Atlas-SNP PADI1 29943 hgsc.bcm.edu 37 1 17566209 17566209 + Missense_Mutation SNP C C G novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 128.0 14.0 203.0 0.0 0.109375 0 . . none . PADI1 77 . NM_013358 exon14 c.C1563G p.H521Q AAAACACCAGGCA . PASS Atlas-SNP VIPR2 7434 hgsc.bcm.edu 37 7 158935181 158935181 + Silent SNP T T C novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 190.0 21.0 264.0 0.0 0.110526 0 . . none . VIPR2 53 . NM_003382 exon2 c.A108G p.T36T ACATTTTGTTTCT . PASS Atlas-SNP MPEG1 219972 hgsc.bcm.edu 37 11 58979544 58979544 + Silent SNP G G A novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 133.0 12.0 128.0 0.0 0.0902256 0 . . none . MPEG1 72 . NM_001039396 exon1 c.C795T p.S265S GAGGTAGCTCTTG . PASS Atlas-SNP KRTAP10-12 386685 hgsc.bcm.edu 37 21 46117576 46117576 + Missense_Mutation SNP C C T novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 64.0 4.0 88.0 0.0 0.0625 0 . . none KRTAP10-12,rectum,carcinoma,0,2 KRTAP10-12 21 2 NM_198699 exon1 c.C460T p.P154S TGTGTGCCCGTCT . scavenged Atlas-SNP HS6ST2 90161 hgsc.bcm.edu 37 X 132091067 132091067 + Missense_Mutation SNP C C A novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 100.0 8.0 134.0 0.0 0.08 0 . . none . HS6ST2 89 . NM_001077188 exon3 c.G716T p.G239V GTGGTGCCCCCGG . PASS Atlas-SNP BTG1 694 hgsc.bcm.edu 37 12 92539203 92539203 + Silent SNP G G A rs369374957 alternate_allele TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 181.0 8.0 187.0 0.0 0.0441989 0 . . alt BTG1,NS,lymphoid_neoplasm,0,3 BTG1 30 3 NM_001731 exon1 c.C109T p.L37L TCTGCAGCTGTCG . PASS Atlas-SNP KIF25 3834 hgsc.bcm.edu 37 6 168443315 168443315 + Missense_Mutation SNP G G A rs146787013 bycluster;byfrequency;by1000genomes TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 62.0 12.0 91.0 0.0 0.193548 0 G|0.993;A|0.007 0.007 strong KIF25,NS,carcinoma,-2,1 KIF25 75 1 NM_030615 exon8 c.G904A p.V302I GCAGGCGTCCTGG . PASS Atlas-SNP PCDH17 27253 hgsc.bcm.edu 37 13 58209024 58209024 + Missense_Mutation SNP G G A novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 41.0 5.0 58.0 0.0 0.121951 0 . . none . PCDH17 304 . NM_001040429 exon1 c.G2344A p.V782I ATGAACGTCATGA . PASS Atlas-SNP ITCH 83737 hgsc.bcm.edu 37 20 32996580 32996580 + Nonsense_Mutation SNP G G A novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 105.0 10.0 151.0 0.0 0.0952381 0 . . none . ITCH 73 . NM_001257137 exon4 c.G194A p.W65X CCAAGTGGAAGCA . PASS Atlas-SNP SFR1 119392 hgsc.bcm.edu 37 10 105883796 105883796 + Missense_Mutation SNP G G A novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 203.0 24.0 297.0 0.0 0.118227 0 . . none MEIR5,NS,carcinoma,-2,1 . . 1 NM_001002759 exon3 c.G460A p.A154T TTAAACGCTGAAA . PASS Atlas-SNP TAB3 257397 hgsc.bcm.edu 37 X 30873153 30873153 + Missense_Mutation SNP G G T novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 170.0 22.0 243.0 0.0 0.129412 0 . . none . TAB3 82 . NM_152787 exon6 c.C629A p.P210Q GCTCTTGGTACAG . PASS Atlas-SNP ELOVL6 79071 hgsc.bcm.edu 37 4 111119485 111119485 + Missense_Mutation SNP T T G novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 102.0 7.0 126.0 0.0 0.0686275 0 . . none . ELOVL6 27 . NM_001130721 exon2 c.A7C p.M3L CTGACATGTTCAT . PASS Atlas-SNP CDH11 1009 hgsc.bcm.edu 37 16 64981740 64981740 + Missense_Mutation SNP G G T novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 162.0 15.0 190.0 0.0 0.0925926 0 . . none . CDH11 260 . NM_001797 exon13 c.C2157A p.D719E GATGAAGTCATCG . PASS Atlas-SNP ITLN1 55600 hgsc.bcm.edu 37 1 160850422 160850422 + Missense_Mutation SNP C C T novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 91.0 22.0 132.0 0.0 0.241758 0 . . none ITLN1,caecum,carcinoma,+1,1 ITLN1 45 1 NM_017625 exon6 c.G641A p.G214D GCGTCGCCAAAAT . PASS Atlas-SNP KLHDC4 54758 hgsc.bcm.edu 37 16 87748161 87748161 + Missense_Mutation SNP C C T novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 138.0 7.0 169.0 0.0 0.0507246 0 . . none . KLHDC4 45 . NM_017566 exon8 c.G778A p.D260N CCTTGTCCACGTC . PASS Atlas-SNP INPP5B 3633 hgsc.bcm.edu 37 1 38355355 38355355 + Missense_Mutation SNP G G A novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 122.0 6.0 177.0 0.0 0.0491803 0 . . none . INPP5B 76 . NM_005540 exon9 c.C671T p.S224F GTGGAGGAGCGAA . PASS Atlas-SNP PRPF31 26121 hgsc.bcm.edu 37 19 54632434 54632434 + Silent SNP C C A novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 51.0 8.0 53.0 0.0 0.156863 0 . . none . PRPF31 48 . NM_015629 exon12 c.C1149A p.I383I CTAGATCGAGGAG . PASS Atlas-SNP CYBB 1536 hgsc.bcm.edu 37 X 37663373 37663373 + Nonsense_Mutation SNP A A T novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 196.0 24.0 324.0 0.0 0.122449 0 . . none . CYBB 62 . NM_000397 exon9 c.A1141T p.K381X GCGTGGAAACTAC . PASS Atlas-SNP LYRM5 144363 hgsc.bcm.edu 37 12 25357062 25357062 + Missense_Mutation SNP A A C novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 194.0 26.0 260.0 0.0 0.134021 0 . . none . LYRM5 10 . NM_001001660 exon3 c.A89C p.D30A GAGCAGACTATTT . PASS Atlas-SNP AMBRA1 55626 hgsc.bcm.edu 37 11 46419037 46419037 + Missense_Mutation SNP T T C novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 50.0 6.0 64.0 1.0 0.12 0.015625 . . none AMBRA1_ENST00000458649,bladder,carcinoma,0,2 AMBRA1 201 2 NM_001267782 exon20 c.A3869G p.D1290G GCAGCGTCCCCCC . scavenged Atlas-SNP SORCS3 22986 hgsc.bcm.edu 37 10 106959775 106959775 + Silent SNP C C T novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 81.0 9.0 91.0 0.0 0.111111 0 . . none . SORCS3 282 . NM_014978 exon15 c.C2028T p.S676S CTTCAGCCTCCGC . PASS Atlas-SNP ZNF496 84838 hgsc.bcm.edu 37 1 247492064 247492064 + Silent SNP G G A rs146066456 alternate_allele TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 93.0 5.0 102.0 0.0 0.0537634 0 G|1.000;T|0.000 . alt . ZNF496 80 . NM_032752 exon4 c.C495T p.N165N ATCCTGGTTCTTT . PASS Atlas-SNP IRS4 8471 hgsc.bcm.edu 37 X 107977810 107977810 + Missense_Mutation SNP C C A novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 76.0 7.0 103.0 0.0 0.0921053 0 . . none . IRS4 253 . NM_003604 exon1 c.G1765T p.G589W CCCCCCCAGAGTT . PASS Atlas-SNP MYBL1 4603 hgsc.bcm.edu 37 8 67492515 67492515 + Silent SNP A A G novel TCGA-FA-A86F-01A-11D-A382-10 TCGA-FA-A86F-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b8a8bb7b-4ae4-40f5-8d6e-e942b0288c71 c6136d19-d490-4585-bc8a-f8ee1c7d7906 87.0 6.0 116.0 0.0 0.0689655 0 . . none . MYBL1 73 . NM_001080416 exon9 c.T954C p.T318T CTCACTAGTGTGC . PASS Atlas-SNP