Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	TVarRat	NVarRat	dbSNP_AF	dbSNP_PopFreq	dbSNP_Strength	COSMIC_Codon	COSMIC_Gene	COSMIC_Gene_Freq	COSMIC_Site_Freq	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	Confidence	Algorithm
PLCB1	23236	hgsc.bcm.edu	37	20	8352099	8352100	+	Splice_Site	INS	-	-	AGGATCCC	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	62.0	19.0	71.0	0.0	0.306	.	.	.	none	.	PLCB1	394	.	NM_015192	exon3	c.246+2->AGGATCCC	.	.	.	PASS	Pindel,Atlas-Indel
SYNE1	23345	hgsc.bcm.edu	37	6	152737628	152737629	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	107.0	24.0	255.0	0.0	0.224	.	.	.	none	.	SYNE1	3227	.	NM_033071	exon41	c.5965_5966insA	p.A1989fs	.	.	PASS	Pindel,Atlas-Indel
CNPY4	245812	hgsc.bcm.edu	37	7	99720170	99720170	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	87.0	17.0	47.0	0.0	0.195402	0	.	.	none	.	CNPY4	18	.	NM_152755	exon3	c.311delC	p.A104fs	.	.	PASS	Atlas-Indel
ENTHD1	150350	hgsc.bcm.edu	37	22	40161596	40161599	+	Frame_Shift_Del	DEL	GAGA	GAGA	-	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	GAGA	GAGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	92.0	12.0	96.0	0.0	0.130435	0	.	.	none	.	ENTHD1	83	.	NM_152512	exon6	c.849_852del	p.283_284del	.	.	PASS	Atlas-Indel
SETX	23064	hgsc.bcm.edu	37	9	135221697	135221698	+	Frame_Shift_Ins	INS	-	-	GGAACTC	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	85.0	27.0	144.0	0.0	0.318	.	.	.	none	SETX,NS,carcinoma,-2,1	SETX	234	1	NM_015046	exon4	c.339_340insGAGTTCC	p.P113fs	.	.	PASS	Pindel,Atlas-Indel
SPTBN5	51332	hgsc.bcm.edu	37	15	42172481	42172482	+	Frame_Shift_Ins	INS	-	-	ATGG	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	69.0	18.0	111.0	0.0	0.261	.	.	.	none	.	SPTBN5	171	.	NM_016642	exon14	c.2583_2584insCCAT	p.M861fs	.	.	PASS	Pindel,Atlas-Indel
TCHH	7062	hgsc.bcm.edu	37	1	152084202	152084203	+	In_Frame_Ins	INS	-	-	CGCCTCTCCTGCTGCTCG	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	94.0	11.0	103.0	0.0	0.117021	0	.	.	none	.	TCHH	275	.	NM_007113	exon3	c.1491_1492insCGAGCAGCAGGAGAGGCG	p.R497delinsREQQERR	.	.	PASS	Atlas-Indel
FLG	2312	hgsc.bcm.edu	37	1	152285878	152285878	+	Missense_Mutation	SNP	G	G	A	rs139321371		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	180.0	21.0	233.0	0.0	0.116667	0	G|1.000;A|0.000	0.000	weak	FLG,NS,carcinoma,0,1	FLG	900	1	NM_002016	exon3	c.C1484T	p.S495L	TGGTGCGATCCTT	.	PASS	Atlas-SNP
FAU	2197	hgsc.bcm.edu	37	11	64889115	64889115	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	76.0	14.0	57.0	0.0	0.184211	0	.	.	none	.	FAU	17	.	NM_001997	exon3	c.C77G	p.A26G	ACATGAGCCTACA	.	PASS	Atlas-SNP
HELZ2	85441	hgsc.bcm.edu	37	20	62194351	62194351	+	Missense_Mutation	SNP	C	C	G	rs148162381	alternate_allele	TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	79.0	21.0	77.0	0.0	0.265823	0	C|1.000;T|0.000	.	alt	.	.	.	.	NM_001037335	exon9	c.G5824C	p.A1942P	CGCAGGCGTACTC	.	PASS	Atlas-SNP
B3GALNT2	148789	hgsc.bcm.edu	37	1	235647809	235647809	+	Silent	SNP	C	C	T	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	61.0	14.0	79.0	0.0	0.229508	0	.	.	none	.	B3GALNT2	36	.	NM_152490	exon4	c.G384A	p.A128A	ACTGAACGCTTCA	.	PASS	Atlas-SNP
UBR4	23352	hgsc.bcm.edu	37	1	19491323	19491323	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	64.0	16.0	67.0	0.0	0.25	0	.	.	none	.	UBR4	415	.	NM_020765	exon32	c.T4481A	p.L1494X	GTCAGTAACTGCA	.	PASS	Atlas-SNP
FAM161B	145483	hgsc.bcm.edu	37	14	74411424	74411424	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	89.0	19.0	68.0	0.0	0.213483	0	.	.	none	.	FAM161B	67	.	NM_152445	exon3	c.G728A	p.R243H	GCCTCGCGCAGCG	.	PASS	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	37	1	237819151	237819151	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	242.0	83.0	198.0	0.0	0.342975	0	.	.	none	.	RYR2	1273	.	NM_001035	exon53	c.C7996A	p.L2666M	CTGGCACTGCCTT	.	PASS	Atlas-SNP
MYT1L	23040	hgsc.bcm.edu	37	2	1796099	1796099	+	Silent	SNP	C	C	T	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	83.0	19.0	104.0	0.0	0.228916	0	.	.	none	MYT1L,trunk,malignant_melanoma,-1,1	MYT1L	241	1	NM_015025	exon24	c.G3408A	p.P1136P	CATGTGCGGCAGC	.	PASS	Atlas-SNP
EXTL3	2137	hgsc.bcm.edu	37	8	28588800	28588800	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	76.0	40.0	82.0	0.0	0.526316	0	.	.	none	.	EXTL3	83	.	NM_001440	exon4	c.A2209T	p.T737S	ATTGAGACAGAGG	.	PASS	Atlas-SNP
BIRC6	57448	hgsc.bcm.edu	37	2	32773075	32773075	+	Silent	SNP	T	T	C	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	115.0	47.0	81.0	0.0	0.408696	0	.	.	none	.	BIRC6	838	.	NM_016252	exon64	c.T12969C	p.L4323L	CTGCCTTCTGCAG	.	PASS	Atlas-SNP
FKBP10	60681	hgsc.bcm.edu	37	17	39974646	39974646	+	Silent	SNP	C	C	T	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	122.0	22.0	109.0	0.0	0.180328	0	.	.	none	FKBP10,NS,carcinoma,+2,1	FKBP10	57	1	NM_021939	exon4	c.C594T	p.G198G	TAAGGGCGGCACT	.	PASS	Atlas-SNP
JMJD1C	221037	hgsc.bcm.edu	37	10	64966940	64966940	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	177.0	27.0	147.0	0.0	0.152542	0	.	.	none	.	JMJD1C	347	.	NM_032776	exon10	c.A4489G	p.S1497G	CATTACTACTTTT	.	PASS	Atlas-SNP
CYP11B1	1584	hgsc.bcm.edu	37	8	143958274	143958274	+	Missense_Mutation	SNP	C	C	T	rs200559974		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	150.0	66.0	105.0	0.0	0.44	0	C|0.999;T|0.001	0.001	weak	CYP11B1,NS,carcinoma,+1,1	CYP11B1	128	1	NM_000497	exon4	c.G623A	p.R208Q	CCCAGCCGCTCTC	.	PASS	Atlas-SNP
DST	667	hgsc.bcm.edu	37	6	56485371	56485371	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	226.0	32.0	190.0	0.0	0.141593	0	.	.	none	.	DST	1427	.	NM_001723	exon23	c.A3461C	p.K1154T	CGGGACTTTTGTT	.	PASS	Atlas-SNP
WDR64	128025	hgsc.bcm.edu	37	1	241842832	241842832	+	Nonsense_Mutation	SNP	C	C	T	rs41304038	bycluster;by1000genomes	TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	164.0	21.0	161.0	0.0	0.128049	0	C|1.000;T|0.000	0.000	strong	WDR64_ENST00000366552,NS,carcinoma,-1,1	WDR64	234	1	NM_144625	exon5	c.C529T	p.R177X	CTGAAACGAATCG	.	PASS	Atlas-SNP
KAAG1	353219	hgsc.bcm.edu	37	6	24358062	24358062	+	Silent	SNP	C	C	T	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	99.0	13.0	75.0	0.0	0.131313	0	.	.	none	.	KAAG1	4	.	NM_181337	exon1	c.C195T	p.G65G	CCAGGGCGCGGGA	.	PASS	Atlas-SNP
DNAJC11	55735	hgsc.bcm.edu	37	1	6700045	6700045	+	Silent	SNP	G	G	A	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	47.0	19.0	85.0	0.0	0.404255	0	.	.	none	.	DNAJC11	93	.	NM_018198	exon11	c.C1170T	p.F390F	GGCATAGAACATG	.	PASS	Atlas-SNP
INPP5F	22876	hgsc.bcm.edu	37	10	121556996	121556996	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	174.0	26.0	123.0	0.0	0.149425	0	.	.	none	.	INPP5F	112	.	NM_014937	exon8	c.G892A	p.V298M	AGAGGAGTGGATA	.	PASS	Atlas-SNP
MIA3	375056	hgsc.bcm.edu	37	1	222805652	222805652	+	Silent	SNP	G	G	A	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	108.0	20.0	96.0	0.0	0.185185	0	.	.	none	.	MIA3	167	.	NM_198551	exon5	c.G3315A	p.E1105E	TACTGAGAAAGAC	.	PASS	Atlas-SNP
PRKD1	5587	hgsc.bcm.edu	37	14	30046638	30046638	+	Silent	SNP	G	G	T	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	114.0	30.0	132.0	0.0	0.263158	0	.	.	none	PRKD1_ENST00000331968,NS,carcinoma,0,2	PRKD1	316	2	NM_002742	exon18	c.C2545A	p.R849R	GCTCTCGCAAATC	.	PASS	Atlas-SNP
ADCY2	108	hgsc.bcm.edu	37	5	7766914	7766914	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	137.0	27.0	216.0	0.0	0.19708	0	.	.	none	.	ADCY2	337	.	NM_020546	exon17	c.C2209T	p.L737F	TTTTTCCTCCCGG	.	PASS	Atlas-SNP
ZNF236	7776	hgsc.bcm.edu	37	18	74611013	74611013	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	74.0	22.0	77.0	0.0	0.297297	0	.	.	none	.	ZNF236	325	.	NM_007345	exon11	c.T1723A	p.F575I	AAAAAATTTCGAA	.	PASS	Atlas-SNP
SPTB	6710	hgsc.bcm.edu	37	14	65253667	65253667	+	Missense_Mutation	SNP	C	C	T	rs151112486	bycluster;byfrequency	TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	38.0	16.0	45.0	0.0	0.421053	0	C|0.999;T|0.001	0.001	strong	.	SPTB	378	.	NM_001024858	exon15	c.G3016A	p.A1006T	GGATGGCGGCCAC	.	PASS	Atlas-SNP
ABP1	26	hgsc.bcm.edu	37	7	150557673	150557673	+	Silent	SNP	C	C	T	rs375543270		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	23.0	9.0	45.0	0.0	0.391304	0	.	.	weak	.	ABP1	92	.	NM_001272072	exon4	c.C1998T	p.P666P	CCCGCCCGTGGTC	.	PASS	Atlas-SNP
BCL2	596	hgsc.bcm.edu	37	18	60985514	60985514	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	73.0	16.0	62.0	0.0	0.219178	0	.	.	none	BCL2,NS,lymphoid_neoplasm,0,1	BCL2	272	1	NM_000633	exon2	c.G386A	p.R129H	GCAAAGCGTCCCC	.	PASS	Atlas-SNP
LARP1B	55132	hgsc.bcm.edu	37	4	129035899	129035899	+	Splice_Site	SNP	T	T	C	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	68.0	17.0	149.0	0.0	0.25	0	.	.	none	.	LARP1B	120	.	NM_018078	exon10	c.1161+2T>C	.	TGAGGGTAAGTTG	.	PASS	Atlas-SNP
IL6ST	3572	hgsc.bcm.edu	37	5	55237383	55237383	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	147.0	34.0	141.0	0.0	0.231293	0	.	.	none	.	IL6ST	75	.	NM_002184	exon17	c.G2284A	p.V762M	GTACCACGGTAGA	.	PASS	Atlas-SNP
FAT1	2195	hgsc.bcm.edu	37	4	187549438	187549438	+	Silent	SNP	C	C	T	rs370954148		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	82.0	21.0	159.0	0.0	0.256098	0	.	.	weak	FAT1,NS,carcinoma,0,2	FAT1	500	2	NM_005245	exon9	c.G4680A	p.P1560P	GAACCACGGGGCG	.	PASS	Atlas-SNP
FFAR4	338557	hgsc.bcm.edu	37	10	95335856	95335856	+	Silent	SNP	G	G	T	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	353.0	42.0	320.0	0.0	0.11898	0	.	.	none	O3FAR1,NS,malignant_melanoma,+1,2	.	.	2	NM_001195755	exon2	c.G576T	p.S192S	AATTTCGATTTGC	.	PASS	Atlas-SNP
TBX18	9096	hgsc.bcm.edu	37	6	85446869	85446869	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	46.0	23.0	78.0	0.0	0.5	0	.	.	none	TBX18,NS,carcinoma,0,1	TBX18	131	1	NM_001080508	exon8	c.G1358A	p.R453K	GGAGTCCTGGGCG	.	PASS	Atlas-SNP
DSP	1832	hgsc.bcm.edu	37	6	7584954	7584954	+	Silent	SNP	C	C	T	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	90.0	66.0	65.0	0.0	0.733333	0	.	.	none	.	DSP	306	.	NM_004415	exon24	c.C7459T	p.L2487L	AAGGGCCTAATTG	.	PASS	Atlas-SNP
PCDHA5	56143	hgsc.bcm.edu	37	5	140201632	140201632	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	90.0	14.0	99.0	0.0	0.155556	0	.	.	none	PCDHA5_ENST00000529859,NS,carcinoma,-1,2	PCDHA5	361	2	NM_018908	exon1	c.G272A	p.R91Q	TCGACCGGGAGGA	.	PASS	Atlas-SNP
FANCD2	2177	hgsc.bcm.edu	37	3	10094085	10094085	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	80.0	25.0	91.0	0.0	0.3125	0	.	.	none	.	FANCD2	253	.	NM_001018115	exon18	c.T1560G	p.Y520X	AGATTATCTGGAT	.	PASS	Atlas-SNP
SKIDA1	387640	hgsc.bcm.edu	37	10	21805466	21805466	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	29.0	7.0	21.0	0.0	0.241379	0	.	.	none	C10orf140_ENST00000449193,caecum,carcinoma,0,4	.	.	4	NM_207371	exon4	c.G1286A	p.G429E	CTGCCCCCCTCCT	.	scavenged	Atlas-SNP
FBXW12	285231	hgsc.bcm.edu	37	3	48420937	48420937	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	156.0	40.0	175.0	0.0	0.25641	0	.	.	none	.	FBXW12	44	.	NM_207102	exon7	c.A663C	p.L221F	TGGGTTAAGAGAT	.	PASS	Atlas-SNP
C4A	720	hgsc.bcm.edu	37	6	31963866	31963866	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	896.0	76.0	694.0	0.0	0.0848214	0	.	.	none	.	C4A	15	.	NM_007293	exon26	c.C3365T	p.P1122L	CCTGTCCAGTGTT	.	PASS	Atlas-SNP
C17orf102	400591	hgsc.bcm.edu	37	17	32905908	32905908	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	93.0	22.0	64.0	0.0	0.236559	0	.	.	none	.	C17orf102	24	.	NM_207454	exon1	c.G392T	p.G131V	ACTGTCCCCTCCT	.	PASS	Atlas-SNP
IGLL5	100423062	hgsc.bcm.edu	37	22	23230400	23230400	+	Missense_Mutation	SNP	T	T	C	rs189360394	by1000genomes	TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	112.0	21.0	137.0	0.0	0.1875	0	T|1.000;C|0.000	0.000	strong	.	IGLL5	26	.	NM_001178126	exon1	c.T167C	p.V56A	CCTCAGTTGGAAG	.	PASS	Atlas-SNP
EGR1	1958	hgsc.bcm.edu	37	5	137801591	137801591	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	83.0	22.0	130.0	0.0	0.26506	0	.	.	none	.	EGR1	52	.	NM_001964	exon1	c.G141C	p.Q47H	TCCCCAGTTCCTC	.	PASS	Atlas-SNP
HIST1H1E	3008	hgsc.bcm.edu	37	6	26156745	26156745	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	70.0	14.0	68.0	0.0	0.2	0	.	.	none	.	HIST1H1E	69	.	NM_005321	exon1	c.C127G	p.L43V	TCCGAGCTCATTA	.	PASS	Atlas-SNP
ENTPD5	957	hgsc.bcm.edu	37	14	74449761	74449761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	99.0	20.0	86.0	0.0	0.20202	0	.	.	none	.	ENTPD5	26	.	NM_001249	exon6	c.G401A	p.R134H	AGTAAGCGTAGTC	.	PASS	Atlas-SNP
PDCD11	22984	hgsc.bcm.edu	37	10	105184917	105184917	+	Silent	SNP	C	C	G	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	94.0	18.0	70.0	0.0	0.191489	0	.	.	none	.	PDCD11	160	.	NM_014976	exon20	c.C2940G	p.L980L	AACCCTCAAGACC	.	PASS	Atlas-SNP
ZNF385D	79750	hgsc.bcm.edu	37	3	21478509	21478509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	85.0	21.0	145.0	0.0	0.247059	0	.	.	none	.	ZNF385D	93	.	NM_024697	exon5	c.G626T	p.C209F	ACCTTGCATAGCG	.	PASS	Atlas-SNP
KRT3	3850	hgsc.bcm.edu	37	12	53183951	53183951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	42.0	8.0	45.0	0.0	0.190476	0	.	.	none	KRT3,rectum,carcinoma,0,1	KRT3	65	1	NM_057088	exon9	c.G1762A	p.G588S	CAAAGCCGCTGCC	.	PASS	Atlas-SNP
CDH18	1016	hgsc.bcm.edu	37	5	19571926	19571926	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	261.0	61.0	338.0	0.0	0.233716	0	.	.	none	.	CDH18	561	.	NM_001167667	exon8	c.A1015T	p.K339X	TCTTTTTCTCATA	.	PASS	Atlas-SNP
RGL3	57139	hgsc.bcm.edu	37	19	11507932	11507932	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	33.0	13.0	46.0	0.0	0.393939	0	.	.	none	.	RGL3	100	.	NM_001161616	exon18	c.C2020T	p.P674S	CCCCAGGAAGGAC	.	PASS	Atlas-SNP
BTK	695	hgsc.bcm.edu	37	X	100613634	100613634	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	134.0	34.0	304.0	0.0	0.253731	0	.	.	none	.	BTK	87	.	NM_000061	exon11	c.T945G	p.Y315X	CACTGTATATTTG	.	PASS	Atlas-SNP
TRANK1	9881	hgsc.bcm.edu	37	3	36898455	36898455	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	70.0	21.0	72.0	0.0	0.3	0	.	.	none	.	TRANK1	398	.	NM_014831	exon12	c.G2626T	p.A876S	CCGTGGCAATGAT	.	PASS	Atlas-SNP
OR2T2	401992	hgsc.bcm.edu	37	1	248616329	248616329	+	Silent	SNP	C	C	T	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	689.0	44.0	674.0	0.0	0.0638607	0	.	.	none	.	OR2T2	73	.	NM_001004136	exon1	c.C231T	p.I77I	CTGTATCACTGTC	.	PASS	Atlas-SNP
B3GNT8	374907	hgsc.bcm.edu	37	19	41932430	41932430	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	89.0	18.0	72.0	0.0	0.202247	0	.	.	none	.	B3GNT8	20	.	NM_198540	exon3	c.G254C	p.S85T	TCCCCACTGGGCA	.	PASS	Atlas-SNP
TFAP2B	7021	hgsc.bcm.edu	37	6	50803938	50803938	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	67.0	10.0	59.0	0.0	0.149254	0	.	.	none	TFAP2B,NS,carcinoma,0,1	TFAP2B	91	1	NM_003221	exon4	c.C766T	p.R256W	CAGAGACGGCTGT	.	PASS	Atlas-SNP
MYO9A	4649	hgsc.bcm.edu	37	15	72122636	72122636	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	58.0	17.0	83.0	1.0	0.293103	0.0120482	.	.	none	MYO9A,colon,carcinoma,-1,2	MYO9A	203	2	NM_006901	exon40	c.G6854A	p.R2285H	CCTCGACGAATAC	.	scavenged	Atlas-SNP
ANO1	55107	hgsc.bcm.edu	37	11	70009435	70009435	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	100.0	17.0	88.0	0.0	0.17	0	.	.	none	ANO1_ENST00000355303,NS,carcinoma,-1,2	ANO1	156	2	NM_018043	exon19	c.C1939T	p.R647X	TCCTTCCGAATGG	.	PASS	Atlas-SNP
SOGA1	140710	hgsc.bcm.edu	37	20	35433301	35433301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	38.0	10.0	38.0	0.0	0.263158	0	.	.	none	SOGA1_ENST00000237536,NS,carcinoma,+1,4	SOGA1	136	4	NM_080627	exon10	c.A2924G	p.N975S	TACTCATTGGGCT	.	PASS	Atlas-SNP
IGLL5	100423062	hgsc.bcm.edu	37	22	23230440	23230440	+	Splice_Site	SNP	G	G	C	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	69.0	12.0	102.0	0.0	0.173913	0	.	.	none	.	IGLL5	26	.	NM_001256296	exon1	c.100+1G>C	.	GGGCAGGTAAGGG	.	PASS	Atlas-SNP
OR5R1	219479	hgsc.bcm.edu	37	11	56184896	56184896	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	165.0	36.0	178.0	0.0	0.218182	0	.	.	none	.	OR5R1	83	.	NM_001004744	exon1	c.C813A	p.D271E	CATCTTGTCTGTG	.	PASS	Atlas-SNP
FANCA	2175	hgsc.bcm.edu	37	16	89880941	89880941	+	Silent	SNP	A	A	T	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	83.0	18.0	90.0	0.0	0.216867	0	.	.	none	.	FANCA	99	.	NM_000135	exon3	c.T270A	p.S90S	TGAACTAGAATGA	.	PASS	Atlas-SNP
SPG11	80208	hgsc.bcm.edu	37	15	44914054	44914054	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	126.0	30.0	153.0	0.0	0.238095	0	.	.	none	.	SPG11	207	.	NM_025137	exon14	c.A2523T	p.E841D	GTTAAATTCATCT	.	PASS	Atlas-SNP
SPO11	23626	hgsc.bcm.edu	37	20	55910492	55910492	+	Silent	SNP	G	G	A	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	90.0	16.0	79.0	0.0	0.177778	0	.	.	none	.	SPO11	43	.	NM_012444	exon7	c.G615A	p.S205S	GCCATCGAATATT	.	PASS	Atlas-SNP
KIAA0754	643314	hgsc.bcm.edu	37	1	39877011	39877011	+	Silent	SNP	A	A	C	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	161.0	36.0	190.0	0.0	0.223602	0	.	.	none	.	KIAA0754	93	.	NM_015038	exon1	c.A1074C	p.A358A	CCTGGCAGATATT	.	PASS	Atlas-SNP
KCNN1	3780	hgsc.bcm.edu	37	19	18108988	18108988	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	44.0	13.0	46.0	0.0	0.295455	0	.	.	none	.	KCNN1	74	.	NM_002248	exon11	c.T1405C	p.S469P	CTTGTATCGGAGC	.	PASS	Atlas-SNP
PSG6	5675	hgsc.bcm.edu	37	19	43420486	43420486	+	Missense_Mutation	SNP	G	G	A	rs140974685	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	124.0	20.0	134.0	0.0	0.16129	0	G|0.969;C|0.031	.	alt	.	PSG6	89	.	NM_001031850	exon2	c.C218T	p.T73M	AGGTCCGTCATTT	.	PASS	Atlas-SNP
BCL7A	605	hgsc.bcm.edu	37	12	122460029	122460029	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	44.0	26.0	45.0	1.0	0.590909	0.0222222	.	.	none	BCL7A,NS,lymphoid_neoplasm,+1,2	BCL7A	31	2	NM_020993	exon1	c.G32C	p.R11T	AGACGAGGAGCCG	.	scavenged	Atlas-SNP
LPHN2	23266	hgsc.bcm.edu	37	1	82421682	82421682	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	114.0	25.0	169.0	0.0	0.219298	0	.	.	none	.	LPHN2	464	.	NM_012302	exon9	c.C1904A	p.A635D	AAGGAGCTTTTGT	.	PASS	Atlas-SNP
HPSE2	60495	hgsc.bcm.edu	37	10	100995457	100995457	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	157.0	25.0	131.0	0.0	0.159236	0	.	.	none	.	HPSE2	203	.	NM_001166246	exon1	c.C103A	p.L35I	GGGAGAGATGGAG	.	PASS	Atlas-SNP
ATP9A	10079	hgsc.bcm.edu	37	20	50310555	50310555	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	128.0	22.0	140.0	0.0	0.171875	0	.	.	none	ATP9A,rectum,carcinoma,+2,2	ATP9A	135	2	NM_006045	exon7	c.A634G	p.T212A	CGGCCGTGGGGAG	.	PASS	Atlas-SNP
PLEKHA6	22874	hgsc.bcm.edu	37	1	204199657	204199657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	123.0	18.0	107.0	0.0	0.146341	0	.	.	none	.	PLEKHA6	115	.	NM_014935	exon18	c.G2467A	p.E823K	TCTGCTCCTCCAC	.	PASS	Atlas-SNP
ARHGEF11	9826	hgsc.bcm.edu	37	1	156931508	156931508	+	Silent	SNP	C	C	T	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	102.0	26.0	91.0	0.0	0.254902	0	.	.	none	.	ARHGEF11	168	.	NM_198236	exon14	c.G1200A	p.L400L	TTTCCCCAAGCTT	.	PASS	Atlas-SNP
FLVCR1	28982	hgsc.bcm.edu	37	1	213061854	213061854	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	248.0	38.0	210.0	0.0	0.153226	0	.	.	none	.	FLVCR1	31	.	NM_014053	exon7	c.C1331A	p.P444H	ACCTCCCTTTGGG	.	PASS	Atlas-SNP
ENAM	10117	hgsc.bcm.edu	37	4	71510318	71510318	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	139.0	46.0	215.0	0.0	0.330935	0	.	.	none	.	ENAM	140	.	NM_031889	exon9	c.G3175A	p.G1059S	TGCTTTGGCTCCA	.	PASS	Atlas-SNP
BCL2	596	hgsc.bcm.edu	37	18	60985870	60985870	+	Silent	SNP	A	A	G	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	80.0	10.0	65.0	0.0	0.125	0	.	.	none	BCL2_ENST00000398117,NS,lymphoid_neoplasm,0,2	BCL2	272	2	NM_000633	exon2	c.T30C	p.D10D	CCGGTTATCGTAC	.	PASS	Atlas-SNP
ZNF286A	57335	hgsc.bcm.edu	37	17	15619433	15619433	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	237.0	51.0	342.0	0.0	0.21519	0	.	.	none	.	ZNF286A	58	.	NM_020652	exon6	c.A395G	p.E132G	AAGCAGAATCATG	.	PASS	Atlas-SNP
MFAP3L	9848	hgsc.bcm.edu	37	4	170926948	170926948	+	Silent	SNP	G	G	A	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	69.0	19.0	81.0	0.0	0.275362	0	.	.	none	.	MFAP3L	59	.	NM_021647	exon2	c.C81T	p.T27T	CTTAGCGGTGGCT	.	PASS	Atlas-SNP
ITFG1	81533	hgsc.bcm.edu	37	16	47494777	47494777	+	Silent	SNP	C	C	T	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	94.0	23.0	85.0	0.0	0.244681	0	.	.	none	.	ITFG1	49	.	NM_030790	exon1	c.G180A	p.K60K	CGTCTGCTTGTCG	.	PASS	Atlas-SNP
SH3RF1	57630	hgsc.bcm.edu	37	4	170043268	170043268	+	Silent	SNP	C	C	T	rs148721890	bycluster;byfrequency;by1000genomes	TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	70.0	22.0	67.0	0.0	0.314286	0	C|0.999;T|0.001	0.001	strong	.	SH3RF1	60	.	NM_020870	exon7	c.G1329A	p.P443P	AGTCTGCGGCCGT	.	PASS	Atlas-SNP
CSN3	1448	hgsc.bcm.edu	37	4	71110559	71110559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	72.0	22.0	85.0	0.0	0.305556	0	.	.	none	.	CSN3	43	.	NM_005212	exon2	c.T23C	p.V8A	TAGTTGTCAATGC	.	PASS	Atlas-SNP
PPP1R3A	5506	hgsc.bcm.edu	37	7	113518866	113518866	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	127.0	37.0	183.0	0.0	0.291339	0	.	.	none	PPP1R3A,trunk,malignant_melanoma,+1,1	PPP1R3A	317	1	NM_002711	exon4	c.C2281T	p.R761X	CACTTCGTGCTGT	.	PASS	Atlas-SNP
RAF1	5894	hgsc.bcm.edu	37	3	12641240	12641240	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	76.0	20.0	98.0	0.0	0.263158	0	.	.	none	.	RAF1	66	.	NM_002880	exon10	c.C1058T	p.T353I	ATCCGAGTGGACA	.	PASS	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	37	12	49420424	49420424	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	70.0	17.0	56.0	0.0	0.242857	0	.	.	none	MLL2_ENST00000301067,NS,carcinoma,+1,2	MLL2	1173	2	NM_003482	exon48	c.T15325C	p.C5109R	TGGGGCAACGCAT	.	PASS	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	37	12	49428192	49428192	+	Splice_Site	SNP	C	C	T	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	32.0	20.0	35.0	0.0	0.625	0	.	.	none	.	MLL2	1173	.	NM_003482	exon38	c.10507+1G>A	.	TACTCACTGATCA	.	PASS	Atlas-SNP
SNX27	81609	hgsc.bcm.edu	37	1	151630819	151630819	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	147.0	24.0	124.0	0.0	0.163265	0	.	.	none	.	SNX27	44	.	NM_030918	exon3	c.C652T	p.R218X	TTTCCTCGACTCC	.	PASS	Atlas-SNP
SPG11	80208	hgsc.bcm.edu	37	15	44914049	44914049	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	121.0	31.0	153.0	0.0	0.256198	0	.	.	none	.	SPG11	207	.	NM_025137	exon14	c.A2528C	p.N843T	TGTTTGTTAAATT	.	PASS	Atlas-SNP
KIF3C	3797	hgsc.bcm.edu	37	2	26204558	26204558	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	75.0	25.0	83.0	0.0	0.333333	0	.	.	none	.	KIF3C	79	.	NM_002254	exon1	c.A229T	p.T77S	TCACGGTTTCGTC	.	PASS	Atlas-SNP
KIF5B	3799	hgsc.bcm.edu	37	10	32307310	32307310	+	Silent	SNP	T	T	C	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	200.0	43.0	187.0	0.0	0.215	0	.	.	none	.	KIF5B	81	.	NM_004521	exon22	c.A2373G	p.K791K	AAGTTCTTTTGCC	.	PASS	Atlas-SNP
SLC2A5	6518	hgsc.bcm.edu	37	1	9097845	9097845	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	36.0	11.0	45.0	0.0	0.305556	0	.	.	none	.	SLC2A5	77	.	NM_003039	exon12	c.G1306A	p.G436S	CGAGGCCCTCCTG	.	PASS	Atlas-SNP
SH3D19	152503	hgsc.bcm.edu	37	4	152069110	152069110	+	Silent	SNP	A	A	C	novel		TCGA-GS-A9TQ-01A-11D-A382-10	TCGA-GS-A9TQ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fed06f8b-2c24-4196-a3e5-4a6acea52761	e7763c46-3083-49b4-8739-24cb4ed05f3c	63.0	14.0	95.0	0.0	0.222222	0	.	.	none	.	SH3D19	54	.	NM_001128923	exon11	c.T1206G	p.R402R	TTTGGGACGAGGG	.	PASS	Atlas-SNP