Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID TTotCov TVarCov NTotCov NVarCov TVarRat NVarRat dbSNP_AF dbSNP_PopFreq dbSNP_Strength COSMIC_Codon COSMIC_Gene COSMIC_Gene_Freq COSMIC_Site_Freq Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target Confidence Algorithm SERPIND1 3053 hgsc.bcm.edu 37 22 21133944 21133944 + Frame_Shift_Del DEL A A - novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 114.0 27.0 95.0 0.0 0.237 . . . none . SERPIND1 92 . NM_000185 exon2 c.343delC p.Q115fs . . PASS Pindel,Atlas-Indel APOB 338 hgsc.bcm.edu 37 2 21241888 21241888 + Frame_Shift_Del DEL G G - novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 132.0 34.0 194.0 0.0 0.257576 0 . . none APOB,caecum,carcinoma,+1,1 APOB 761 1 NM_000384 exon20 c.3098delT p.L1033fs . . PASS Atlas-Indel CHEK2 11200 hgsc.bcm.edu 37 22 29130418 29130419 + Frame_Shift_Ins INS - - AT novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 84.0 15.0 71.0 0.0 0.179 . . . none . CHEK2 438 . NM_007194 exon2 c.292_293insAT p.A98fs . . PASS Pindel,Atlas-Indel AASS 10157 hgsc.bcm.edu 37 7 121726174 121726174 + Frame_Shift_Del DEL A A - novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 66.0 16.0 126.0 0.0 0.242 . . . none . AASS 123 . NM_005763 exon19 c.2077delC p.P693fs . . PASS Pindel,Atlas-Indel NCAM2 4685 hgsc.bcm.edu 37 21 22881305 22881306 + Frame_Shift_Del DEL GA GA - novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 GA GA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 159.0 21.0 198.0 0.0 0.132075 0 . . none NCAM2,NS,carcinoma,+1,1 NCAM2 220 1 NM_004540 exon16 c.2210_2211del p.737_737del . . PASS Atlas-Indel HECTD1 25831 hgsc.bcm.edu 37 14 31598249 31598250 + Frame_Shift_Ins INS - - C novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 206.0 28.0 290.0 0.0 0.135922 0 . . none . HECTD1 159 . NM_015382 exon25 c.4328_4329insG p.S1443fs . . PASS Atlas-Indel HECTD1 25831 hgsc.bcm.edu 37 14 31598245 31598247 + In_Frame_Del DEL GGA GGA - novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 GGA GGA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 208.0 27.0 282.0 0.0 0.129808 0 . . none . HECTD1 159 . NM_015382 exon25 c.4331_4333del p.1444_1445del . . PASS Atlas-Indel IFIH1 64135 hgsc.bcm.edu 37 2 163144683 163144684 + Frame_Shift_Ins INS - - T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 334.0 53.0 365.0 0.0 0.159 . . . none IFIH1,scalp,carcinoma,0,1 IFIH1 102 1 NM_022168 exon5 c.1057_1058insA p.A353fs . . PASS Pindel,Atlas-Indel SIPA1L1 26037 hgsc.bcm.edu 37 14 72152170 72152172 + In_Frame_Del DEL AAC AAC - novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 AAC AAC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 94.0 28.0 81.0 0.0 0.298 . . . none . SIPA1L1 219 . NM_015556 exon10 c.3195_3197del p.1065_1066del . . PASS Pindel,Atlas-Indel UACA 55075 hgsc.bcm.edu 37 15 70961075 70961076 + Frame_Shift_Ins INS - - T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 424.0 80.0 504.0 0.0 0.189 . . . none . UACA 235 . NM_018003 exon16 c.1948_1949insA p.L650fs . . PASS Pindel,Atlas-Indel B2M 567 hgsc.bcm.edu 37 15 45003781 45003782 + Frame_Shift_Del DEL CT CT - novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 CT CT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 57.0 13.0 98.0 0.0 0.22807 0 . . none B2M,colon,carcinoma,+1,2 B2M 99 2 NM_004048 exon1 c.36_37del p.12_13del . . PASS Atlas-Indel C21orf67 84536 hgsc.bcm.edu 37 21 46355747 46355748 + RNA DEL TC TC - novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 TC TC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 69.0 25.0 51.0 0.0 0.362 . . . none . C21orf67 8 . . . . . . . PASS Pindel,Atlas-Indel TMSB4X 7114 hgsc.bcm.edu 37 X 12994405 12994410 + In_Frame_Del DEL GAGATC GAGATC - novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 GAGATC GAGATC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 312.0 41.0 400.0 0.0 0.13141 0 . . none . TMSB4X 3 . NM_021109 exon2 c.24_29del p.8_10del . . PASS Atlas-Indel LRRIQ1 84125 hgsc.bcm.edu 37 12 85449643 85449643 + Frame_Shift_Del DEL A A - novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 96.0 16.0 110.0 0.0 0.167 . . . none . LRRIQ1 512 . NM_001079910 exon8 c.1071delG p.R357fs . . PASS Pindel,Atlas-Indel PEG3 5178 hgsc.bcm.edu 37 19 57325865 57325865 + Frame_Shift_Del DEL A A - novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 118.0 23.0 142.0 0.0 0.194915 0 . . none . PEG3 414 . NM_001146184 exon9 c.3946delA p.T1316fs . . PASS Atlas-Indel NCAM2 4685 hgsc.bcm.edu 37 21 22881298 22881299 + Frame_Shift_Ins INS - - C novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 167.0 25.0 212.0 0.0 0.149701 0 . . none . NCAM2 220 . NM_004540 exon16 c.2204_2205insC p.I735fs . . PASS Atlas-Indel NR2F2 7026 hgsc.bcm.edu 37 15 96877601 96877615 + In_Frame_Del DEL CTCACCTGGAGCGAG CTCACCTGGAGCGAG - novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 CTCACCTGGAGCGAG CTCACCTGGAGCGAG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 55.0 11.0 74.0 0.0 0.200 . . . none . NR2F2 35 . NM_021005 exon2 c.738_752del p.246_251del . . PASS Pindel,Atlas-Indel C4orf17 84103 hgsc.bcm.edu 37 4 100461611 100461618 + In_Frame_Del DEL AGGTTAAG AGGTTAAG - novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 AGGTTAAG AGGTTAAG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 114.0 25.0 137.0 0.0 0.219 . . . none . C4orf17 42 . NM_032149 exon8 c.878_880del p.293_294del . . PASS Pindel,Atlas-Indel APOB 338 hgsc.bcm.edu 37 2 21241889 21241890 + Frame_Shift_Del DEL GG GG - novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 GG GG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 131.0 27.0 197.0 0.0 0.206 . . . none APOB,caecum,carcinoma,+2,1 APOB 761 1 NM_000384 exon20 c.3096_3097del p.1032_1033del . . PASS Pindel PEG3 5178 hgsc.bcm.edu 37 19 57325865 57325866 + Frame_Shift_Del DEL AT AT - novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 AT AT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 122.0 19.0 142.0 0.0 0.156 . . . none . PEG3 414 . NM_001146184 exon9 c.3945_3946del p.1315_1316del . . PASS Pindel ISL1 3670 hgsc.bcm.edu 37 5 50683348 50683348 + Silent SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 147.0 18.0 113.0 0.0 0.122449 0 . . none . ISL1 65 . NM_002202 exon3 c.G243A p.K81K CGCCAAGTGCAGC . PASS Atlas-SNP KDM3A 55818 hgsc.bcm.edu 37 2 86669185 86669185 + Silent SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 51.0 20.0 71.0 0.0 0.392157 0 . . none . KDM3A 179 . NM_001146688 exon2 c.C15T p.L5L CACGCTCGGAGAA . PASS Atlas-SNP MIS18BP1 55320 hgsc.bcm.edu 37 14 45693171 45693171 + Silent SNP A A G novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 140.0 42.0 173.0 0.0 0.3 0 . . none . MIS18BP1 92 . NM_018353 exon11 c.T2619C p.G873G AATTAAACCAGGT . PASS Atlas-SNP AKAP17A 8227 hgsc.bcm.edu 37 X 1712439 1712439 + Silent SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 144.0 37.0 156.0 0.0 0.256944 0 . . none . AKAP17A 46 . NM_005088 exon2 c.C84T p.T28T CATCACCAAGATG . PASS Atlas-SNP KLHL7 55975 hgsc.bcm.edu 37 7 23165412 23165412 + Missense_Mutation SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 84.0 42.0 152.0 0.0 0.5 0 . . none . KLHL7 102 . NM_001172428 exon5 c.G475A p.E159K CTTCCAGAGTGTG . PASS Atlas-SNP RGS8 85397 hgsc.bcm.edu 37 1 182640795 182640795 + Missense_Mutation SNP C C A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 223.0 73.0 279.0 0.0 0.327354 0 . . none . RGS8 51 . NM_033345 exon2 c.G77T p.R26I CACTGTCTTTGGC . PASS Atlas-SNP OR2A25 392138 hgsc.bcm.edu 37 7 143771336 143771336 + Silent SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 146.0 26.0 181.0 0.0 0.178082 0 . . none OR2A25,caecum,carcinoma,+2,1 OR2A25 66 1 NM_001004488 exon1 c.C24T p.I8I TTCCATCACAGAG . PASS Atlas-SNP FREM2 341640 hgsc.bcm.edu 37 13 39262600 39262600 + Silent SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 56.0 11.0 61.0 0.0 0.196429 0 . . none . FREM2 385 . NM_207361 exon1 c.C1119T p.T373T GAGCACCGATGAT . PASS Atlas-SNP PCLO 27445 hgsc.bcm.edu 37 7 82584908 82584908 + Missense_Mutation SNP C C G novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 331.0 96.0 505.0 1.0 0.29003 0.0019802 . . none . PCLO 1506 . NM_014510 exon5 c.G5361C p.K1787N TTGCTCCTTTAAT . PASS Atlas-SNP CLEC7A 64581 hgsc.bcm.edu 37 12 10278006 10278006 + Nonsense_Mutation SNP C C A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 56.0 20.0 74.0 0.0 0.357143 0 . . none . CLEC7A 55 . NM_197947 exon4 c.G382T p.E128X TCTTCTCATATAT . PASS Atlas-SNP SLC26A7 115111 hgsc.bcm.edu 37 8 92301369 92301369 + Missense_Mutation SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 466.0 124.0 425.0 1.0 0.266094 0.00235294 . . none SLC26A7_ENST00000309536,rectum,carcinoma,-1,2 SLC26A7 207 2 NM_134266 exon3 c.G199A p.A67T GGATTGGCCTTTG . PASS Atlas-SNP EMC1 23065 hgsc.bcm.edu 37 1 19559222 19559222 + Missense_Mutation SNP A A T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 162.0 43.0 170.0 0.0 0.265432 0 . . none . . . . NM_015047 exon15 c.T1678A p.Y560N GTAGATACTGTTT . PASS Atlas-SNP ESRP1 54845 hgsc.bcm.edu 37 8 95676969 95676969 + Missense_Mutation SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 145.0 59.0 171.0 0.0 0.406897 0 . . none ESRP1_ENST00000433389,NS,carcinoma,+1,2 ESRP1 148 2 NM_001122827 exon7 c.G689A p.R230Q GGGCACGAGGTTT . PASS Atlas-SNP CD1A 909 hgsc.bcm.edu 37 1 158226646 158226646 + Silent SNP C C G novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 245.0 71.0 242.0 0.0 0.289796 0 . . none . CD1A 88 . NM_001763 exon4 c.C675G p.V225V CCATGTCTCAGGA . PASS Atlas-SNP INVS 27130 hgsc.bcm.edu 37 9 103054777 103054777 + Silent SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 174.0 47.0 122.0 0.0 0.270115 0 . . none . INVS 81 . NM_014425 exon14 c.C2238T p.S746S GCCCTCCTGTATC . PASS Atlas-SNP SLC22A4 6583 hgsc.bcm.edu 37 5 131630330 131630330 + Silent SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 107.0 15.0 95.0 0.0 0.140187 0 . . none . SLC22A4 45 . NM_003059 exon1 c.G21A p.V7V CGAGGTGATCGCC . PASS Atlas-SNP ZNF445 353274 hgsc.bcm.edu 37 3 44488625 44488625 + Silent SNP C C A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 235.0 75.0 245.0 0.0 0.319149 0 . . none . ZNF445 91 . NM_181489 exon8 c.G2538T p.G846G GGTTTTCCCACAT . PASS Atlas-SNP CACNA1H 8912 hgsc.bcm.edu 37 16 1268451 1268451 + Missense_Mutation SNP C C T rs139080716 by1000genomes TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 49.0 20.0 41.0 0.0 0.408163 0 C|0.999;T|0.001 0.001 strong . CACNA1H 317 . NM_021098 exon33 c.C5687T p.A1896V TGGACGCGGACAG . PASS Atlas-SNP KCNK13 56659 hgsc.bcm.edu 37 14 90650648 90650648 + Silent SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 88.0 26.0 108.0 0.0 0.295455 0 . . none . KCNK13 76 . NM_022054 exon2 c.G528A p.L176L GAGCCTGAAGGAT . PASS Atlas-SNP DSCAM 1826 hgsc.bcm.edu 37 21 41648055 41648055 + Silent SNP G G A rs372175757 TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 123.0 45.0 148.0 0.0 0.365854 0 . . weak DSCAM,colon,carcinoma,0,1 DSCAM 347 1 NM_001271534 exon11 c.C2325T p.D775D GCTGACGTCTGCG . PASS Atlas-SNP SELL 6402 hgsc.bcm.edu 37 1 169677562 169677562 + Silent SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 146.0 41.0 181.0 0.0 0.280822 0 . . none . SELL 43 . NM_000655 exon3 c.C507T p.Y169Y ACCTGTGTAACAG . PASS Atlas-SNP SH3RF3 344558 hgsc.bcm.edu 37 2 110049003 110049003 + Missense_Mutation SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 41.0 15.0 55.0 0.0 0.365854 0 . . none . SH3RF3 62 . NM_001099289 exon6 c.G1450A p.E484K GAGCTGGAGCTGC . PASS Atlas-SNP BAIAP2L1 55971 hgsc.bcm.edu 37 7 97991678 97991678 + Missense_Mutation SNP C C A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 351.0 59.0 411.0 0.0 0.168091 0 . . none BAIAP2L1,right_upper_lobe,carcinoma,0,1 BAIAP2L1 61 1 NM_018842 exon2 c.G118T p.A40S TTACAGCTTTCTC . PASS Atlas-SNP GPR98 84059 hgsc.bcm.edu 37 5 90052843 90052843 + Silent SNP C C T rs144269892 bycluster;by1000genomes TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 192.0 26.0 211.0 0.0 0.135417 0 C|0.998;T|0.002 0.002 strong . GPR98 605 . NM_032119 exon57 c.C11805T p.N3935N CTTGAACGTTCTT . PASS Atlas-SNP ZNF814 730051 hgsc.bcm.edu 37 19 58385793 58385793 + Missense_Mutation SNP C C T rs113623532 bycluster TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 205.0 21.0 215.0 0.0 0.102439 0 C|0.500;T|0.500 0.500 weak . ZNF814 93 . NM_001144989 exon3 c.G965A p.R322K TAAGGTCTTTTCC . PASS Atlas-SNP ZNF814 730051 hgsc.bcm.edu 37 19 58385790 58385790 + Missense_Mutation SNP G G T rs111727691 bycluster TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 211.0 20.0 221.0 0.0 0.0947867 0 G|0.500;T|0.500 0.500 weak . ZNF814 93 . NM_001144989 exon3 c.C968A p.P323H TCATAAGGTCTTT . PASS Atlas-SNP BANP 54971 hgsc.bcm.edu 37 16 88039846 88039846 + Silent SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 58.0 15.0 57.0 0.0 0.258621 0 . . none . BANP 67 . NM_001173542 exon6 c.C630T p.V210V CAACGTCACGCTC . PASS Atlas-SNP ABLIM3 22885 hgsc.bcm.edu 37 5 148620293 148620293 + Missense_Mutation SNP C C G novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 71.0 43.0 72.0 0.0 0.605634 0 . . none . ABLIM3 91 . NM_014945 exon14 c.C1259G p.S420C GGTCCTCCACTCC . PASS Atlas-SNP C1orf112 55732 hgsc.bcm.edu 37 1 169821960 169821960 + Missense_Mutation SNP C C A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 119.0 31.0 174.0 0.0 0.260504 0 . . none . C1orf112 74 . NM_018186 exon24 c.C2394A p.F798L GGAGTTCCCCTGG . PASS Atlas-SNP GABRQ 55879 hgsc.bcm.edu 37 X 151817742 151817742 + Missense_Mutation SNP G G C novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 153.0 60.0 200.0 0.0 0.392157 0 . . none . GABRQ 131 . NM_018558 exon5 c.G556C p.D186H TCCCTGGATCTGC . PASS Atlas-SNP PTPRC 5788 hgsc.bcm.edu 37 1 198685901 198685901 + Missense_Mutation SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 499.0 156.0 554.0 1.0 0.312625 0.00180505 . . none . PTPRC 229 . NM_002838 exon13 c.C1382T p.A461V TACATGCCTACAT . PASS Atlas-SNP ZNF513 130557 hgsc.bcm.edu 37 2 27601207 27601207 + Silent SNP A A G novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 22.0 7.0 12.0 0.0 0.318182 0 . . none . ZNF513 45 . NM_144631 exon4 c.T831C p.H277H TGGCACATGGAGG . PASS Atlas-SNP FOXRED2 80020 hgsc.bcm.edu 37 22 36886232 36886232 + Silent SNP C C G novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 49.0 14.0 49.0 0.0 0.285714 0 . . none FOXRED2,right_upper_lobe,carcinoma,0,1 FOXRED2 48 1 NM_001102371 exon9 c.G1878C p.V626V GGTACTCACGAGT . PASS Atlas-SNP FRMD4B 23150 hgsc.bcm.edu 37 3 69237039 69237039 + Nonsense_Mutation SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 110.0 24.0 91.0 0.0 0.218182 0 . . none . FRMD4B 90 . NM_015123 exon19 c.C1801T p.R601X TTGATCGCTGCCC . PASS Atlas-SNP CEP85 64793 hgsc.bcm.edu 37 1 26601519 26601519 + Missense_Mutation SNP G G T rs201784964 alternate_allele TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 103.0 33.0 88.0 0.0 0.320388 0 G|0.998;A|0.002 . alt . CEP85 61 . NM_022778 exon12 c.G1859T p.R620L CCCAGCGAAGGGA . PASS Atlas-SNP CBFA2T3 863 hgsc.bcm.edu 37 16 89043112 89043112 + Missense_Mutation SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 102.0 38.0 102.0 0.0 0.372549 0 . . none . CBFA2T3 47 . NM_005187 exon1 c.C104T p.A35V GCAGATGCCAGGA . PASS Atlas-SNP AGBL3 340351 hgsc.bcm.edu 37 7 134730655 134730655 + Missense_Mutation SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 126.0 37.0 189.0 0.0 0.293651 0 . . none . AGBL3 45 . NM_178563 exon11 c.G1834A p.E612K GATGTAGAGTCTA . PASS Atlas-SNP ASIC5 51802 hgsc.bcm.edu 37 4 156757920 156757920 + Missense_Mutation SNP T T G novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 138.0 46.0 182.0 0.0 0.333333 0 . . none . . . . NM_017419 exon8 c.A1156C p.I386L AAGAAATAGTGGC . PASS Atlas-SNP EDA 1896 hgsc.bcm.edu 37 X 69253328 69253328 + Missense_Mutation SNP G G C novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 74.0 21.0 139.0 0.0 0.283784 0 . . none . EDA 61 . NM_001399 exon7 c.G874C p.E292Q AGCGGGGAGCTGG . PASS Atlas-SNP CCSER1 401145 hgsc.bcm.edu 37 4 91230610 91230610 + Missense_Mutation SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 145.0 21.0 185.0 0.0 0.144828 0 . . none . . . . NM_001145065 exon2 c.G1175A p.R392K CCCCAAGGAAACT . PASS Atlas-SNP USP24 23358 hgsc.bcm.edu 37 1 55587126 55587126 + Missense_Mutation SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 198.0 49.0 204.0 0.0 0.247475 0 . . none . USP24 323 . NM_015306 exon37 c.G4330A p.G1444R GTGATCCGAGCAG . PASS Atlas-SNP EIF3L 51386 hgsc.bcm.edu 37 22 38270414 38270414 + Missense_Mutation SNP C C A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 161.0 49.0 175.0 0.0 0.304348 0 . . none . EIF3L 35 . NM_016091 exon9 c.C789A p.H263Q GCGGCACTCCCTC . PASS Atlas-SNP ITPKB 3707 hgsc.bcm.edu 37 1 226924770 226924770 + Silent SNP C C T rs144653273 by1000genomes TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 48.0 17.0 59.0 0.0 0.354167 0 C|1.000;T|0.000 0.000 strong . ITPKB 158 . NM_002221 exon2 c.G390A p.K130K CCGCAGCTTCCTC . PASS Atlas-SNP TNPO1 3842 hgsc.bcm.edu 37 5 72189245 72189245 + Missense_Mutation SNP A A C novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 105.0 13.0 102.0 0.0 0.12381 0 . . none . TNPO1 90 . NM_002270 exon17 c.A1938C p.K646N AGATAAAGATTTT . PASS Atlas-SNP TMPRSS6 164656 hgsc.bcm.edu 37 22 37485626 37485626 + Silent SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 87.0 27.0 101.0 0.0 0.310345 0 . . none . TMPRSS6 99 . NM_153609 exon7 c.C855T p.L285L GGTGATGAGCCTC . PASS Atlas-SNP JARID2 3720 hgsc.bcm.edu 37 6 15504821 15504821 + Missense_Mutation SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 43.0 23.0 42.0 0.0 0.534884 0 . . none . JARID2 135 . NM_004973 exon9 c.G2539A p.E847K GAAATCGAGGTGA . PASS Atlas-SNP SPRED2 200734 hgsc.bcm.edu 37 2 65561836 65561836 + Missense_Mutation SNP C C G novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 162.0 51.0 189.0 0.0 0.314815 0 . . none . SPRED2 70 . NM_181784 exon3 c.G276C p.K92N ATCGACCTTCCAG . PASS Atlas-SNP GTPBP8 29083 hgsc.bcm.edu 37 3 112719765 112719765 + Silent SNP A A G novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 99.0 32.0 98.0 0.0 0.323232 0 . . none . GTPBP8 22 . NM_014170 exon6 c.A854G p.X285X TTGACTAATGGTT . PASS Atlas-SNP JMJD1C 221037 hgsc.bcm.edu 37 10 64967691 64967691 + Missense_Mutation SNP T T A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 193.0 48.0 182.0 0.0 0.248705 0 . . none . JMJD1C 347 . NM_032776 exon10 c.A3738T p.E1246D CTGTGATTCTTGA . PASS Atlas-SNP FAM26E 254228 hgsc.bcm.edu 37 6 116836827 116836827 + Missense_Mutation SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 224.0 62.0 285.0 0.0 0.276786 0 . . none FAM26E,NS,carcinoma,+1,1 FAM26E 26 1 NM_153711 exon2 c.G605A p.R202H ATGCTCGCTGCCG . PASS Atlas-SNP KCNH8 131096 hgsc.bcm.edu 37 3 19322823 19322823 + Splice_Site SNP T T C novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 129.0 39.0 150.0 0.0 0.302326 0 . . none . KCNH8 189 . NM_144633 exon3 c.442+2T>C . AGAAGGTTTGTAC . PASS Atlas-SNP CTRC 11330 hgsc.bcm.edu 37 1 15771170 15771170 + Missense_Mutation SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 101.0 10.0 108.0 0.0 0.0990099 0 . . none . CTRC 28 . NM_007272 exon6 c.G563A p.R188K GCTCCAGGATTGA . PASS Atlas-SNP ERCC6L 54821 hgsc.bcm.edu 37 X 71426262 71426262 + Silent SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 225.0 64.0 273.0 0.0 0.284444 0 . . none . ERCC6L 98 . NM_017669 exon2 c.G2355A p.E785E TTGTTTCTCACCC . PASS Atlas-SNP ZFC3H1 196441 hgsc.bcm.edu 37 12 72038798 72038798 + Nonsense_Mutation SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 376.0 118.0 469.0 0.0 0.31383 0 . . none . ZFC3H1 172 . NM_144982 exon4 c.C1138T p.Q380X CTGACTGAAGAGC . PASS Atlas-SNP ABT1 29777 hgsc.bcm.edu 37 6 26598677 26598677 + Missense_Mutation SNP C C T rs367868700 alternate_allele TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 116.0 51.0 105.0 0.0 0.439655 0 . . alt . ABT1 39 . NM_013375 exon3 c.C623T p.S208F ATGGCTCCTGGAC . PASS Atlas-SNP DPYD 1806 hgsc.bcm.edu 37 1 98187169 98187169 + Missense_Mutation SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 182.0 61.0 243.0 0.0 0.335165 0 . . none . DPYD 219 . NM_000110 exon5 c.G380A p.G127E ACCATTCCACAAG . PASS Atlas-SNP COL14A1 7373 hgsc.bcm.edu 37 8 121219248 121219248 + Missense_Mutation SNP T T G novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 208.0 68.0 136.0 0.0 0.326923 0 . . none . COL14A1 292 . NM_021110 exon10 c.T1106G p.F369C GAAGCTTTATGGT . PASS Atlas-SNP TRMT5 57570 hgsc.bcm.edu 37 14 61446275 61446275 + Missense_Mutation SNP T T C novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 238.0 28.0 282.0 0.0 0.117647 0 . . none . TRMT5 44 . NM_020810 exon2 c.A341G p.K114R GCCCTTTTTAGGG . PASS Atlas-SNP OPRM1 4988 hgsc.bcm.edu 37 6 154411241 154411241 + Missense_Mutation SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 82.0 36.0 91.0 0.0 0.439024 0 . . none . OPRM1 241 . NM_001145279 exon4 c.G850A p.V284I ATCAATGTCTGCA . PASS Atlas-SNP OBSCN 84033 hgsc.bcm.edu 37 1 228471339 228471339 + Missense_Mutation SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 77.0 23.0 105.0 0.0 0.298701 0 . . none . OBSCN 2142 . NM_001271223 exon38 c.C10160T p.S3387L GGGCCTCAGGGAA . PASS Atlas-SNP RNASE3 6037 hgsc.bcm.edu 37 14 21360199 21360199 + Silent SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 129.0 42.0 144.0 0.0 0.325581 0 . . none . RNASE3 24 . NM_002935 exon2 c.G354A p.Q118Q TGCACAGAATATT . PASS Atlas-SNP PDE1B 5153 hgsc.bcm.edu 37 12 54963009 54963009 + Missense_Mutation SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 79.0 38.0 105.0 0.0 0.481013 0 . . none . PDE1B 76 . NM_000924 exon4 c.C269T p.S90L TGCGGTCAGATGC . PASS Atlas-SNP AVIL 10677 hgsc.bcm.edu 37 12 58197374 58197374 + Nonsense_Mutation SNP C C A rs143313987 alternate_allele TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 98.0 21.0 101.0 0.0 0.214286 0 C|1.000;T|0.000 . alt . AVIL 60 . NM_006576 exon14 c.G1750T p.E584X GGCCCTCGGCCAC . PASS Atlas-SNP P2RY8 286530 hgsc.bcm.edu 37 X 1584685 1584685 + Missense_Mutation SNP A A G novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 61.0 28.0 98.0 0.0 0.459016 0 . . none . P2RY8 53 . NM_178129 exon2 c.T767C p.V256A AGGAGCACGAAGT . PASS Atlas-SNP KIAA1024 23251 hgsc.bcm.edu 37 15 79749276 79749276 + Missense_Mutation SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 138.0 18.0 190.0 0.0 0.130435 0 . . none KIAA1024,NS,carcinoma,0,1 KIAA1024 146 1 NM_015206 exon2 c.G787A p.D263N AAAGAGGATTTTC . PASS Atlas-SNP ZSCAN20 7579 hgsc.bcm.edu 37 1 33960285 33960285 + Missense_Mutation SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 90.0 32.0 95.0 0.0 0.355556 0 . . none . ZSCAN20 107 . NM_145238 exon8 c.C2341T p.L781F TCTAATCTCATCA . PASS Atlas-SNP SULT1B1 27284 hgsc.bcm.edu 37 4 70615486 70615486 + Silent SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 231.0 38.0 274.0 0.0 0.164502 0 . . none . SULT1B1 46 . NM_014465 exon4 c.C328T p.L110L TCGGTAGATGTGT . PASS Atlas-SNP PRB1 5542 hgsc.bcm.edu 37 12 11508468 11508468 + Nonsense_Mutation SNP G G T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 138.0 27.0 134.0 0.0 0.195652 0 . . none . PRB1 33 . NM_199353 exon1 c.C20A p.S7X GCCACTGACAGCA . PASS Atlas-SNP NR2E1 7101 hgsc.bcm.edu 37 6 108499427 108499427 + Silent SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 89.0 19.0 102.0 0.0 0.213483 0 . . none NR2E1,NS,carcinoma,0,1 NR2E1 57 1 NM_003269 exon5 c.G624A p.T208T CTCCACGCTGTCT . PASS Atlas-SNP DUSP16 80824 hgsc.bcm.edu 37 12 12653527 12653527 + Missense_Mutation SNP G G C rs369986596 TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 114.0 38.0 110.0 0.0 0.333333 0 . . weak . DUSP16 64 . NM_030640 exon4 c.C457G p.P153A CAACAGGTAAGCA . PASS Atlas-SNP MET 4233 hgsc.bcm.edu 37 7 116422095 116422095 + Missense_Mutation SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 120.0 21.0 140.0 0.0 0.175 0 . . none . MET 412 . NM_001127500 exon18 c.G3630A p.M1210I AGGCATGAAATAT . PASS Atlas-SNP DNHD1 144132 hgsc.bcm.edu 37 11 6567484 6567484 + Missense_Mutation SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 107.0 53.0 103.0 0.0 0.495327 0 . . none DNHD1,NS,carcinoma,+1,2 DNHD1 198 2 NM_144666 exon21 c.G5315A p.R1772Q CTTCCCGAAACAC . PASS Atlas-SNP TGS1 96764 hgsc.bcm.edu 37 8 56715141 56715141 + Missense_Mutation SNP G G C novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 69.0 11.0 70.0 0.0 0.15942 0 . . none . TGS1 66 . NM_024831 exon9 c.G1975C p.D659H CGTTTTGATGATG . PASS Atlas-SNP FANCL 55120 hgsc.bcm.edu 37 2 58459217 58459217 + Missense_Mutation SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 126.0 40.0 135.0 0.0 0.31746 0 . . none . FANCL 35 . NM_018062 exon2 c.C127T p.P43S CTTCAGGCAACAC . PASS Atlas-SNP CDCA7 83879 hgsc.bcm.edu 37 2 174224116 174224116 + Missense_Mutation SNP A A G novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 232.0 71.0 200.0 0.0 0.306034 0 . . none . CDCA7 48 . NM_031942 exon3 c.A281G p.K94R TACAGAAACCAAG . PASS Atlas-SNP MAGI1 9223 hgsc.bcm.edu 37 3 65376868 65376868 + Missense_Mutation SNP G G T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 138.0 45.0 176.0 0.0 0.326087 0 . . none MAGI1_ENST00000402939,NS,lymphoid_neoplasm,0,4 MAGI1 481 4 NM_001033057 exon14 c.C2365A p.P789T GATCTGGTTTTTT . PASS Atlas-SNP MYCBP2 23077 hgsc.bcm.edu 37 13 77754319 77754319 + Silent SNP G G T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 206.0 62.0 182.0 0.0 0.300971 0 . . none . MYCBP2 1029 . NM_015057 exon34 c.C5076A p.T1692T TCCACAGGTGTTA . PASS Atlas-SNP DNAH10 196385 hgsc.bcm.edu 37 12 124272402 124272402 + Silent SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 61.0 11.0 70.0 0.0 0.180328 0 . . none . DNAH10 888 . NM_207437 exon10 c.C1290T p.L430L CACCCTCAGGCTG . PASS Atlas-SNP ZNF366 167465 hgsc.bcm.edu 37 5 71756780 71756780 + Missense_Mutation SNP G G C rs140439481 bycluster;byfrequency TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 73.0 40.0 80.0 0.0 0.547945 0 G|1.000;C|0.000 0.000 strong . ZNF366 108 . NM_152625 exon2 c.C544G p.P182A GGCCCGGGTGGAC . PASS Atlas-SNP ATP10B 23120 hgsc.bcm.edu 37 5 160047422 160047422 + Missense_Mutation SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 141.0 15.0 167.0 0.0 0.106383 0 . . none . ATP10B 201 . NM_025153 exon15 c.G2348A p.G783D ATCTCGCCAGTCA . PASS Atlas-SNP HECTD1 25831 hgsc.bcm.edu 37 14 31598253 31598253 + Missense_Mutation SNP A A T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 211.0 34.0 280.0 0.0 0.161137 0 . . none . HECTD1 159 . NM_015382 exon25 c.T4324A p.S1442T AAGATGACCCTAC . PASS Atlas-SNP SMC2 10592 hgsc.bcm.edu 37 9 106875690 106875690 + Missense_Mutation SNP G G T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 279.0 104.0 270.0 0.0 0.37276 0 . . none . SMC2 127 . NM_006444 exon11 c.G1348T p.A450S CAAGAAGCTCTAG . PASS Atlas-SNP SPATS2L 26010 hgsc.bcm.edu 37 2 201284179 201284179 + Silent SNP G G C novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 90.0 31.0 147.0 0.0 0.344444 0 . . none . SPATS2L 88 . NM_001100423 exon6 c.G405C p.S135S GATCTCGATACTT . PASS Atlas-SNP NRK 203447 hgsc.bcm.edu 37 X 105153118 105153118 + Silent SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 161.0 15.0 236.0 0.0 0.0931677 0 . . none . NRK 321 . NM_198465 exon13 c.C1485T p.S495S ACAGTCCCAGGTA . PASS Atlas-SNP DNAH10 196385 hgsc.bcm.edu 37 12 124359986 124359986 + Missense_Mutation SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 143.0 38.0 179.0 0.0 0.265734 0 . . none . DNAH10 888 . NM_207437 exon46 c.C7793T p.S2598L TTCCTTCAGAGGA . PASS Atlas-SNP KCTD20 222658 hgsc.bcm.edu 37 6 36447473 36447473 + Nonsense_Mutation SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 64.0 29.0 63.0 0.0 0.453125 0 . . none KCTD20,rectum,carcinoma,-1,1 KCTD20 37 1 NM_173562 exon5 c.C643T p.R215X ACTATCCGATGTC . PASS Atlas-SNP RNFT1 51136 hgsc.bcm.edu 37 17 58034594 58034594 + Silent SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 142.0 61.0 135.0 0.0 0.429577 0 . . none RNFT1_ENST00000305783,NS,carcinoma,0,1 RNFT1 30 1 NM_016125 exon6 c.C996T p.L332L TAATATGAGGTAG . PASS Atlas-SNP PDP1 54704 hgsc.bcm.edu 37 8 94935821 94935821 + Nonsense_Mutation SNP C C T rs202225648 TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 127.0 14.0 97.0 0.0 0.110236 0 C|0.999;T|0.001 0.001 weak PDP1,rectum,carcinoma,-1,1 PDP1 97 1 NM_001161780 exon3 c.C1609T p.R537X CTTGCTCGAATGT . PASS Atlas-SNP ZNF266 10781 hgsc.bcm.edu 37 19 9524292 9524292 + Missense_Mutation SNP C C G novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 100.0 34.0 105.0 0.0 0.34 0 . . none . ZNF266 65 . NM_001271314 exon11 c.G1309C p.E437Q GGCACTCAAAGGG . PASS Atlas-SNP SPTA1 6708 hgsc.bcm.edu 37 1 158622386 158622386 + Nonsense_Mutation SNP A A T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 161.0 23.0 179.0 0.0 0.142857 0 . . none . SPTA1 720 . NM_003126 exon23 c.T3246A p.Y1082X TTCATTATAACGT . PASS Atlas-SNP APOB 338 hgsc.bcm.edu 37 2 21241890 21241890 + Missense_Mutation SNP G G C novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 132.0 34.0 198.0 0.0 0.257576 0 . . none . APOB 761 . NM_000384 exon20 c.C3095G p.T1032S TTCAGGGTATCCA . PASS Atlas-SNP AARS2 57505 hgsc.bcm.edu 37 6 44274068 44274068 + Missense_Mutation SNP G G A rs143703625 byfrequency;alternate_allele TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 72.0 12.0 75.0 0.0 0.166667 0 G|0.999;T|0.001 . alt . AARS2 77 . NM_020745 exon9 c.C1249T p.R417W TGATCCGCCTACC . PASS Atlas-SNP GPR98 84059 hgsc.bcm.edu 37 5 90151709 90151709 + Missense_Mutation SNP T T C novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 225.0 115.0 230.0 0.0 0.511111 0 . . none . GPR98 605 . NM_032119 exon82 c.T17746C p.C5916R TTTATATGTATCT . PASS Atlas-SNP YES1 7525 hgsc.bcm.edu 37 18 743032 743032 + Missense_Mutation SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 293.0 25.0 258.0 0.0 0.0853242 0 . . none . YES1 50 . NM_005433 exon8 c.G946A p.A316T GGAAAGCTTCTGG . PASS Atlas-SNP XPO1 7514 hgsc.bcm.edu 37 2 61719472 61719472 + Missense_Mutation SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 278.0 84.0 301.0 0.0 0.302158 0 . . none XPO1,NS,carcinoma,0,17 XPO1 108 17 NM_003400 exon15 c.G1711A p.E571K TGAATTCGAACAG . PASS Atlas-SNP POU3F4 5456 hgsc.bcm.edu 37 X 82764220 82764220 + Silent SNP T T C novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 113.0 19.0 158.0 0.0 0.168142 0 . . none . POU3F4 136 . NM_000307 exon1 c.T888C p.H296H GACGCATTTCCTC . PASS Atlas-SNP QRFPR 84109 hgsc.bcm.edu 37 4 122250653 122250653 + Missense_Mutation SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 298.0 28.0 385.0 1.0 0.0939597 0.0025974 . . none QRFPR,NS,carcinoma,-1,1 QRFPR 65 1 NM_198179 exon6 c.G1112A p.R371Q TTCTTCCGCATCA . scavenged Atlas-SNP SPTA1 6708 hgsc.bcm.edu 37 1 158614070 158614070 + Silent SNP G G A rs189877287 bycluster;by1000genomes TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 145.0 17.0 186.0 0.0 0.117241 0 G|1.000;A|0.000 0.000 strong SPTA1,NS,carcinoma,0,1 SPTA1 720 1 NM_003126 exon30 c.C4311T p.D1437D CAAATCGTCCCGT . PASS Atlas-SNP SLC32A1 140679 hgsc.bcm.edu 37 20 37356863 37356863 + Missense_Mutation SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 101.0 27.0 100.0 0.0 0.267327 0 . . none . SLC32A1 81 . NM_080552 exon2 c.G1159A p.V387M TTTCTGGTGGCCA . PASS Atlas-SNP C10orf137 26098 hgsc.bcm.edu 37 10 127429569 127429569 + Splice_Site SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 209.0 50.0 254.0 0.0 0.239234 0 . . none . C10orf137 153 . NM_001202438 exon17 c.2171-1G>A . TAAACAGATACTT . PASS Atlas-SNP SLC4A1AP 22950 hgsc.bcm.edu 37 2 27886844 27886844 + Silent SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 62.0 19.0 66.0 0.0 0.306452 0 . . none . SLC4A1AP 63 . NM_018158 exon1 c.G225A p.K75K CTTCAAGAAGCCA . PASS Atlas-SNP HKDC1 80201 hgsc.bcm.edu 37 10 70998835 70998835 + Missense_Mutation SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 88.0 28.0 96.0 0.0 0.318182 0 . . none HKDC1,NS,carcinoma,+1,2 HKDC1 98 2 NM_025130 exon5 c.G533A p.R178Q AGGCACGAGGAGT . PASS Atlas-SNP ZBTB40 9923 hgsc.bcm.edu 37 1 22838349 22838349 + Missense_Mutation SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 104.0 33.0 110.0 0.0 0.317308 0 . . none . ZBTB40 87 . NM_001083621 exon12 c.C2183T p.S728F CAGCCTCCCCAGA . PASS Atlas-SNP PABPC3 5042 hgsc.bcm.edu 37 13 25672209 25672209 + Missense_Mutation SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 48.0 21.0 52.0 0.0 0.4375 0 . . none . PABPC3 129 . NM_030979 exon1 c.G1873A p.A625T AACAGTGCTACCG . PASS Atlas-SNP NEBL 10529 hgsc.bcm.edu 37 10 21309114 21309114 + Missense_Mutation SNP A A G novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 171.0 48.0 180.0 0.0 0.280702 0 . . none . NEBL 199 . NM_001173484 exon3 c.T181C p.S61P TGAAGGACTGCTT . PASS Atlas-SNP HOXC13 3229 hgsc.bcm.edu 37 12 54339026 54339026 + Missense_Mutation SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 42.0 13.0 55.0 0.0 0.309524 0 . . none . HOXC13 24 . NM_017410 exon2 c.C979T p.L327F CCTCATCTCCACT . PASS Atlas-SNP C11orf87 399947 hgsc.bcm.edu 37 11 109294503 109294503 + Silent SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 139.0 23.0 219.0 1.0 0.165468 0.00456621 . . none C11orf87,NS,carcinoma,+1,1 C11orf87 37 1 NM_207645 exon2 c.G144A p.T48T CATCACGCAGGTG . scavenged Atlas-SNP ZNF501 115560 hgsc.bcm.edu 37 3 44776170 44776170 + Missense_Mutation SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 94.0 16.0 99.0 0.0 0.170213 0 . . none . ZNF501 27 . NM_001258280 exon3 c.C257T p.A86V AGAAAGCCTTTCA . PASS Atlas-SNP C18orf54 162681 hgsc.bcm.edu 37 18 51904570 51904570 + Missense_Mutation SNP G G C novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 172.0 40.0 145.0 0.0 0.232558 0 . . none . C18orf54 40 . NM_173529 exon8 c.G1073C p.R358T GCCTGAGAGACCT . PASS Atlas-SNP TRIM25 7706 hgsc.bcm.edu 37 17 54969281 54969281 + Missense_Mutation SNP A A T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 82.0 29.0 101.0 0.0 0.353659 0 . . none . TRIM25 52 . NM_005082 exon9 c.T1673A p.I558N GCAGAGATCTTGG . PASS Atlas-SNP ZNF217 7764 hgsc.bcm.edu 37 20 52198236 52198236 + Missense_Mutation SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 132.0 50.0 131.0 0.0 0.378788 0 . . none . ZNF217 227 . NM_006526 exon1 c.G1130A p.C377Y TCGGAGCAGTGAG . PASS Atlas-SNP RPL7 6129 hgsc.bcm.edu 37 8 74204061 74204061 + Silent SNP G G C novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 97.0 21.0 85.0 0.0 0.216495 0 . . none . RPL7 20 . NM_000971 exon4 c.C375G p.L125L CTTGTTGAGCTTC . PASS Atlas-SNP DNAJC7 7266 hgsc.bcm.edu 37 17 40128785 40128785 + Missense_Mutation SNP G G C novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 58.0 21.0 57.0 0.0 0.362069 0 . . none . DNAJC7 51 . NM_003315 exon14 c.C1451G p.S484C GGACCAGATGCTG . PASS Atlas-SNP IQCC 55721 hgsc.bcm.edu 37 1 32672879 32672879 + Silent SNP G G A rs201910762 by1000genomes TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 76.0 30.0 96.0 0.0 0.394737 0 G|1.000;A|0.000 0.000 strong . IQCC 46 . NM_001160042 exon5 c.G837A p.A279A AGAGGCGGGCCCG . PASS Atlas-SNP TPR 7175 hgsc.bcm.edu 37 1 186313566 186313566 + Missense_Mutation SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 152.0 20.0 196.0 0.0 0.131579 0 . . none . TPR 441 . NM_003292 exon25 c.G3358A p.A1120T ATTCTGCTTTCTG . PASS Atlas-SNP CTTNBP2 83992 hgsc.bcm.edu 37 7 117400606 117400606 + Missense_Mutation SNP T T G novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 191.0 74.0 313.0 0.0 0.387435 0 . . none . CTTNBP2 200 . NM_033427 exon10 c.A3055C p.N1019H AATGATTTGTCAG . PASS Atlas-SNP MYT1L 23040 hgsc.bcm.edu 37 2 1926161 1926161 + Missense_Mutation SNP G G C novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 203.0 58.0 268.0 0.0 0.285714 0 . . none . MYT1L 241 . NM_015025 exon10 c.C1380G p.D460E CATATTGTCCCTC . PASS Atlas-SNP CHEK2 11200 hgsc.bcm.edu 37 22 29130412 29130412 + Nonsense_Mutation SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 78.0 20.0 65.0 0.0 0.25641 0 . . none . CHEK2 438 . NM_145862 exon2 c.C298T p.Q100X CATCCTGAAGGGC . PASS Atlas-SNP KIAA0922 23240 hgsc.bcm.edu 37 4 154525477 154525477 + Missense_Mutation SNP C C A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 204.0 55.0 215.0 0.0 0.269608 0 . . none . KIAA0922 214 . NM_001131007 exon25 c.C3313A p.L1105I CGGGAGCTCTGTC . PASS Atlas-SNP IFNA14 3448 hgsc.bcm.edu 37 9 21239704 21239704 + Silent SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 178.0 41.0 154.0 0.0 0.230337 0 . . none . IFNA14 29 . NM_002172 exon1 c.C231T p.I77I GACAGAGATGGCT . PASS Atlas-SNP EVC 2121 hgsc.bcm.edu 37 4 5811258 5811258 + Missense_Mutation SNP A A C novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 55.0 18.0 65.0 0.0 0.327273 0 . . none . EVC 90 . NM_153717 exon19 c.A2702C p.N901T AACAGAACTTCAT . PASS Atlas-SNP SGPL1 8879 hgsc.bcm.edu 37 10 72633215 72633215 + Silent SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 113.0 13.0 139.0 0.0 0.115044 0 . . none . SGPL1 37 . NM_003901 exon12 c.C1167T p.S389S TGCTTCCCCAACC . PASS Atlas-SNP ALX1 8092 hgsc.bcm.edu 37 12 85677538 85677538 + Missense_Mutation SNP T T G novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 118.0 27.0 143.0 0.0 0.228814 0 . . none . ALX1 61 . NM_006982 exon2 c.T415G p.F139V ACCACCTTCACCA . PASS Atlas-SNP GRIN2C 2905 hgsc.bcm.edu 37 17 72846900 72846900 + Missense_Mutation SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 58.0 18.0 87.0 0.0 0.310345 0 . . none . GRIN2C 144 . NM_000835 exon5 c.C1120T p.R374C CCCAGCGCCCCAC . PASS Atlas-SNP HIST1H3D 8351 hgsc.bcm.edu 37 6 26197219 26197219 + Missense_Mutation SNP C C G novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 132.0 21.0 151.0 0.0 0.159091 0 . . none . HIST1H3D 31 . NM_003530 exon2 c.G260C p.S87T GCCGAGCTCTGAA . PASS Atlas-SNP SCN7A 6332 hgsc.bcm.edu 37 2 167298253 167298253 + Missense_Mutation SNP A A T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 172.0 47.0 224.0 0.0 0.273256 0 . . none . SCN7A 410 . NM_002976 exon14 c.T1810A p.F604I ACTTGAAAATTCT . PASS Atlas-SNP COX2 5743 hgsc.bcm.edu 37 MT 8160 8160 + Missense_Mutation SNP A A G novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 30.0 26.0 5.0 0.0 0.866667 0 . . none . . . . ENST00000361739 exon1 c.A575G p.Y192C GGGTATACTACGG . PASS Atlas-SNP CLTB 1212 hgsc.bcm.edu 37 5 175824641 175824641 + Missense_Mutation SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 133.0 15.0 129.0 0.0 0.112782 0 . . none . CLTB 17 . NM_001834 exon4 c.G431A p.S144N TGTTCACTCTGGC . PASS Atlas-SNP SDHC 6391 hgsc.bcm.edu 37 1 161298187 161298187 + Missense_Mutation SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 58.0 17.0 62.0 0.0 0.293103 0 . . none . SDHC 19 . NM_001035511 exon3 c.G79A p.A27T TTTAGTGCTGTTC . PASS Atlas-SNP FAM120C 54954 hgsc.bcm.edu 37 X 54209068 54209068 + Silent SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 74.0 27.0 140.0 0.0 0.364865 0 . . none . FAM120C 89 . NM_017848 exon1 c.G564A p.Q188Q CTCGGCCTGGCAC . PASS Atlas-SNP RAB6B 51560 hgsc.bcm.edu 37 3 133557035 133557035 + Missense_Mutation SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 63.0 21.0 86.0 0.0 0.333333 0 . . none RAB6B,NS,carcinoma,+1,1 RAB6B 36 1 NM_016577 exon6 c.C470T p.A157V GTCTTCGCACTGG . PASS Atlas-SNP STK3 6788 hgsc.bcm.edu 37 8 99591963 99591963 + Missense_Mutation SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 398.0 33.0 344.0 0.0 0.0829146 0 . . none . STK3 47 . NM_001256312 exon10 c.G961A p.E321K TAGCTTCTGTGAT . PASS Atlas-SNP HSPA14 51182 hgsc.bcm.edu 37 10 14893270 14893270 + Missense_Mutation SNP T T C novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 97.0 14.0 112.0 0.0 0.14433 0 . . none . HSPA14 42 . NM_016299 exon7 c.T520C p.S174P GAACCGTCTGCAG . PASS Atlas-SNP PNPLA5 150379 hgsc.bcm.edu 37 22 44280171 44280171 + Missense_Mutation SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 52.0 17.0 78.0 0.0 0.326923 0 . . none PNPLA5,NS,carcinoma,0,1 PNPLA5 46 1 NM_138814 exon7 c.C1004T p.S335L GGCCCCGAGTGCC . PASS Atlas-SNP NT5DC3 51559 hgsc.bcm.edu 37 12 104186994 104186994 + Missense_Mutation SNP C C A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 154.0 42.0 176.0 0.0 0.272727 0 . . none NT5DC3,rectum,carcinoma,0,1 NT5DC3 113 1 NM_001031701 exon9 c.G967T p.D323Y CCACATCGAACAG . PASS Atlas-SNP SLC20A1 6574 hgsc.bcm.edu 37 2 113404650 113404650 + Missense_Mutation SNP G G C novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 147.0 47.0 162.0 0.0 0.319728 0 . . none . SLC20A1 59 . NM_005415 exon2 c.G245C p.S82T AAGTGAGCGAAAC . PASS Atlas-SNP USP24 23358 hgsc.bcm.edu 37 1 55549034 55549034 + Missense_Mutation SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 64.0 9.0 69.0 0.0 0.140625 0 . . none . USP24 323 . NM_015306 exon58 c.G6886A p.G2296R TAATTCCTTGCTG . PASS Atlas-SNP GPC3 2719 hgsc.bcm.edu 37 X 132833966 132833966 + Missense_Mutation SNP C C A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 583.0 200.0 976.0 2.0 0.343053 0.00204918 . . none . GPC3 88 . NM_001164617 exon5 c.G1192T p.V398F GAGCAACTTTTAA . PASS Atlas-SNP ND3 0 hgsc.bcm.edu 37 MT 10178 10178 + Silent SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 29.0 26.0 6.0 0.0 0.896552 0 . . none . . . . ENST00000361227 exon1 c.C120T p.G40G GTGCGGCTTCGAC . PASS Atlas-SNP TTC3 7267 hgsc.bcm.edu 37 21 38520899 38520899 + Silent SNP T T C novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 353.0 89.0 331.0 0.0 0.252125 0 . . none . TTC3 182 . NM_001001894 exon23 c.T2070C p.N690N CATGAATTGCTGG . PASS Atlas-SNP CDKL1 8814 hgsc.bcm.edu 37 14 50808859 50808859 + Missense_Mutation SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 133.0 43.0 134.0 0.0 0.323308 0 . . none CDKL1_ENST00000395834,NS,carcinoma,0,2 CDKL1 50 2 NM_004196 exon4 c.C448T p.R150W AAAGCCGAGCAAA . PASS Atlas-SNP COLEC11 78989 hgsc.bcm.edu 37 2 3691387 3691387 + Silent SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 70.0 16.0 94.0 0.0 0.228571 0 . . none . COLEC11 93 . NM_001255985 exon8 c.C537T p.D179D CGCGGACGCCCAG . PASS Atlas-SNP RUNX3 864 hgsc.bcm.edu 37 1 25256143 25256143 + Missense_Mutation SNP T T A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 62.0 24.0 90.0 0.0 0.387097 0 . . none . RUNX3 72 . NM_001031680 exon2 c.A259T p.N87Y GGAAGTTGGGGCT . PASS Atlas-SNP SMURF1 57154 hgsc.bcm.edu 37 7 98652487 98652487 + Silent SNP G G C novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 60.0 16.0 59.0 0.0 0.266667 0 . . none . SMURF1 58 . NM_020429 exon6 c.C405G p.V135V TAAACTGACTAAA . PASS Atlas-SNP LEPR 3953 hgsc.bcm.edu 37 1 66101961 66101961 + Missense_Mutation SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 239.0 43.0 236.0 0.0 0.179916 0 . . none LEPR_ENST00000349533,colon,carcinoma,0,1 LEPR 284 1 NM_002303 exon20 c.G2761A p.D921N TCAGAAGATATCA . PASS Atlas-SNP OPTN 10133 hgsc.bcm.edu 37 10 13167997 13167997 + Missense_Mutation SNP T T G novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 220.0 33.0 249.0 0.0 0.15 0 . . none OPTN,colon,carcinoma,+1,1 OPTN 57 1 NM_001008212 exon11 c.T1200G p.H400Q AGAACATAATAAT . PASS Atlas-SNP PARD3B 117583 hgsc.bcm.edu 37 2 206166288 206166288 + Silent SNP C C A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 273.0 41.0 294.0 0.0 0.150183 0 . . none . PARD3B 314 . NM_205863 exon18 c.C2493A p.A831A TAAAGCCAGGAAA . PASS Atlas-SNP ACSL3 2181 hgsc.bcm.edu 37 2 223787815 223787815 + Missense_Mutation SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 525.0 122.0 596.0 1.0 0.232381 0.00167785 . . none . ACSL3 107 . NM_203372 exon9 c.G1100A p.G367E AAAAAGGAAGCAA . PASS Atlas-SNP MUM1 84939 hgsc.bcm.edu 37 19 1357062 1357062 + Missense_Mutation SNP C C G novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 240.0 70.0 232.0 0.0 0.291667 0 . . none MUM1,colon,carcinoma,0,1 MUM1 54 1 NM_032853 exon3 c.C115G p.L39V TATTTTCTAGCTG . PASS Atlas-SNP ZNF439 90594 hgsc.bcm.edu 37 19 11979140 11979140 + Missense_Mutation SNP T T C novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 98.0 20.0 101.0 0.0 0.204082 0 . . none . ZNF439 67 . NM_152262 exon3 c.T1256C p.F419S AAGCCTTCAGATC . PASS Atlas-SNP ABCB8 11194 hgsc.bcm.edu 37 7 150733637 150733637 + Missense_Mutation SNP T T G novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 24.0 9.0 48.0 0.0 0.375 0 . . none . ABCB8 65 . NM_007188 exon9 c.T1118G p.V373G GCATGGTCTTGGG . PASS Atlas-SNP ABHD2 11057 hgsc.bcm.edu 37 15 89694933 89694933 + Missense_Mutation SNP A A G novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 123.0 46.0 146.0 0.0 0.373984 0 . . none . ABHD2 55 . NM_007011 exon8 c.A220G p.K74E TGGGGGAAAAGTG . PASS Atlas-SNP IRX2 153572 hgsc.bcm.edu 37 5 2749795 2749795 + Missense_Mutation SNP T T C novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 137.0 28.0 172.0 0.0 0.20438 0 . . none . IRX2 60 . NM_001134222 exon2 c.A356G p.K119R GCGTTCTTGCGGT . PASS Atlas-SNP FAM178B 51252 hgsc.bcm.edu 37 2 97637661 97637661 + Missense_Mutation SNP T T C novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 124.0 46.0 144.0 0.0 0.370968 0 . . none . FAM178B 35 . NM_001122646 exon3 c.A541G p.S181G GCTGGCTCAGGCC . PASS Atlas-SNP METTL16 79066 hgsc.bcm.edu 37 17 2371109 2371109 + Missense_Mutation SNP G G C novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 176.0 37.0 228.0 0.0 0.210227 0 . . none . METTL16 75 . NM_024086 exon5 c.C531G p.I177M GTCATAGATTATC . PASS Atlas-SNP DTX3L 151636 hgsc.bcm.edu 37 3 122288596 122288596 + Missense_Mutation SNP G G C novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 81.0 29.0 75.0 0.0 0.358025 0 . . none . DTX3L 59 . NM_138287 exon3 c.G1660C p.D554H GAACTGGACAAGA . PASS Atlas-SNP SWAP70 23075 hgsc.bcm.edu 37 11 9761816 9761816 + Missense_Mutation SNP A A G novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 67.0 25.0 48.0 0.0 0.373134 0 . . none . SWAP70 40 . NM_015055 exon9 c.A1277G p.Y426C ACATGTACCTAAA . PASS Atlas-SNP GRIN2B 2904 hgsc.bcm.edu 37 12 13717016 13717016 + Silent SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 167.0 27.0 248.0 0.0 0.161677 0 . . none . GRIN2B 303 . NM_000834 exon13 c.C3156T p.H1052H GTCGTCGTGGCCA . PASS Atlas-SNP ANO3 63982 hgsc.bcm.edu 37 11 26538445 26538445 + Silent SNP A A C novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 182.0 55.0 218.0 0.0 0.302198 0 . . none . ANO3 145 . NM_031418 exon6 c.A663C p.A221A GTATGCAGAGAGG . PASS Atlas-SNP HIST4H4 121504 hgsc.bcm.edu 37 12 14923847 14923847 + Missense_Mutation SNP C C G novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 83.0 12.0 116.0 0.0 0.144578 0 . . none . HIST4H4 13 . NM_175054 exon1 c.G172C p.V58L TGAGGACTCCCCG . PASS Atlas-SNP MTMR1 8776 hgsc.bcm.edu 37 X 149899968 149899968 + Missense_Mutation SNP A A G novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 219.0 74.0 317.0 0.0 0.3379 0 . . none . MTMR1 82 . NM_003828 exon8 c.A744G p.I248M GAAAATATCCAAA . PASS Atlas-SNP AR 367 hgsc.bcm.edu 37 X 66937418 66937418 + Missense_Mutation SNP G G C novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 109.0 15.0 168.0 0.0 0.137615 0 . . none . AR 249 . NM_000044 exon5 c.G2272C p.V758L ACCAATGTCAACT . PASS Atlas-SNP DCLK1 9201 hgsc.bcm.edu 37 13 36428729 36428729 + Silent SNP A A G novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 82.0 21.0 111.0 0.0 0.256098 0 . . none . DCLK1 350 . NM_004734 exon6 c.T942C p.V314V TCCATTAACTAGA . PASS Atlas-SNP RAB9A 9367 hgsc.bcm.edu 37 X 13727323 13727323 + Missense_Mutation SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 145.0 22.0 150.0 0.0 0.151724 0 . . none . RAB9A 17 . NM_004251 exon3 c.C458T p.T153I TTGAAACAAGTGC . PASS Atlas-SNP DGCR2 9993 hgsc.bcm.edu 37 22 19029399 19029399 + Silent SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 64.0 21.0 79.0 0.0 0.328125 0 . . none . DGCR2 45 . NM_005137 exon8 c.C1080T p.I360I TGACAGGATGAGG . PASS Atlas-SNP RHOBTB2 23221 hgsc.bcm.edu 37 8 22865187 22865187 + Missense_Mutation SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 47.0 12.0 32.0 0.0 0.255319 0 . . none . RHOBTB2 67 . NM_001160036 exon7 c.G1495A p.E499K AACCAGGAGATCA . PASS Atlas-SNP ENOSF1 55556 hgsc.bcm.edu 37 18 697244 697244 + Missense_Mutation SNP C C A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 141.0 50.0 112.0 0.0 0.35461 0 . . none . ENOSF1 44 . NM_202758 exon3 c.G368T p.R123I ACCCATCTGAGCT . PASS Atlas-SNP OR56A3 390083 hgsc.bcm.edu 37 11 5968801 5968801 + Missense_Mutation SNP C C G rs200944882 by1000genomes;alternate_allele TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 142.0 57.0 171.0 0.0 0.401408 0 C|1.000;T|0.000 . alt . OR56A3 81 . NM_001003443 exon1 c.C225G p.I75M GGACATCGTGCTC . PASS Atlas-SNP ATP10B 23120 hgsc.bcm.edu 37 5 160025799 160025799 + Missense_Mutation SNP T T G novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 117.0 14.0 113.0 0.0 0.119658 0 . . none . ATP10B 201 . NM_025153 exon22 c.A3542C p.Y1181S CTCTTGTATAGCT . PASS Atlas-SNP CCDC164 92749 hgsc.bcm.edu 37 2 26652610 26652610 + Missense_Mutation SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 96.0 32.0 107.0 0.0 0.333333 0 . . none . CCDC164 84 . NM_145038 exon5 c.C655T p.R219C ACCTTTCGTGAGG . PASS Atlas-SNP SRM 6723 hgsc.bcm.edu 37 1 11115065 11115065 + Missense_Mutation SNP G G C novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 118.0 20.0 145.0 0.0 0.169492 0 . . none SRM,NS,carcinoma,+1,1 SRM 18 1 NM_003132 exon7 c.C842G p.S281C ACGTCGGAGTTGT . PASS Atlas-SNP HMCN1 83872 hgsc.bcm.edu 37 1 185953339 185953339 + Silent SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 171.0 32.0 176.0 0.0 0.187135 0 . . none . HMCN1 797 . NM_031935 exon19 c.G2829A p.G943G TGATGGGAGCCTC . PASS Atlas-SNP REV3L 5980 hgsc.bcm.edu 37 6 111685068 111685068 + Silent SNP T T C novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 190.0 25.0 197.0 0.0 0.131579 0 . . none . REV3L 386 . NM_002912 exon16 c.A6867G p.K2289K TAAAGCTTTTGCC . PASS Atlas-SNP MANBA 4126 hgsc.bcm.edu 37 4 103585914 103585914 + Silent SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 251.0 79.0 288.0 0.0 0.314741 0 . . none . MANBA 78 . NM_005908 exon11 c.C1413T p.F471F GTCAGTGAAACTG . PASS Atlas-SNP TNRC6A 27327 hgsc.bcm.edu 37 16 24804956 24804956 + Missense_Mutation SNP C C A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 43.0 14.0 53.0 0.0 0.325581 0 . . none . TNRC6A 171 . NM_014494 exon7 c.C3338A p.A1113E CACAAGCATTAAG . PASS Atlas-SNP CX3CL1 6376 hgsc.bcm.edu 37 16 57416809 57416809 + Missense_Mutation SNP C C G novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 39.0 11.0 48.0 0.0 0.282051 0 . . none . CX3CL1 27 . NM_002996 exon3 c.C1059G p.F353L CCTCTTCTGCCTG . PASS Atlas-SNP PTPRR 5801 hgsc.bcm.edu 37 12 71092083 71092083 + Missense_Mutation SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 84.0 25.0 81.0 0.0 0.297619 0 . . none PTPRR,NS,carcinoma,0,1 PTPRR 109 1 NM_002849 exon8 c.G1241A p.R414H CCATGACGCGGAA . PASS Atlas-SNP ZSCAN32 54925 hgsc.bcm.edu 37 16 3433530 3433530 + Silent SNP A A G novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 124.0 22.0 158.0 0.0 0.177419 0 . . none . . . . NM_017810 exon6 c.T780C p.S260S CTCCTCACTCTCC . PASS Atlas-SNP PINK1 65018 hgsc.bcm.edu 37 1 20975644 20975644 + Nonsense_Mutation SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 148.0 40.0 145.0 0.0 0.27027 0 . . none . PINK1 37 . NM_032409 exon7 c.C1408T p.Q470X GAGGCTCAGCTAC . PASS Atlas-SNP KNTC1 9735 hgsc.bcm.edu 37 12 123107092 123107092 + Silent SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 192.0 58.0 187.0 0.0 0.302083 0 . . none . KNTC1 182 . NM_014708 exon62 c.G6453A p.K2151K GTTGAAGATGCAT . PASS Atlas-SNP SLITRK5 26050 hgsc.bcm.edu 37 13 88328058 88328058 + Missense_Mutation SNP A A C novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 148.0 29.0 149.0 0.0 0.195946 0 . . none . SLITRK5 192 . NM_015567 exon2 c.A415C p.N139H AACAATAATAAAC . PASS Atlas-SNP CXCR7 57007 hgsc.bcm.edu 37 2 237489798 237489798 + Silent SNP C C A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 115.0 24.0 139.0 0.0 0.208696 0 . . none . CXCR7 72 . NM_020311 exon2 c.C690A p.V230V CGCTGTCTTCTAC . PASS Atlas-SNP REEP4 80346 hgsc.bcm.edu 37 8 21996529 21996529 + Missense_Mutation SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 39.0 20.0 78.0 0.0 0.512821 0 . . none . REEP4 13 . NM_025232 exon6 c.G463A p.D155N GCAGGTCCTGCAT . PASS Atlas-SNP GRID1 2894 hgsc.bcm.edu 37 10 87898678 87898678 + Silent SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 70.0 14.0 115.0 0.0 0.2 0 . . none . GRID1 204 . NM_017551 exon4 c.C624T p.L208L GGTGAAGAGGCTG . PASS Atlas-SNP ZFP28 140612 hgsc.bcm.edu 37 19 57065996 57065996 + Silent SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 137.0 36.0 175.0 0.0 0.262774 0 . . none . ZFP28 99 . NM_020828 exon8 c.G1842A p.E614E TGGGGAGAAGCCT . PASS Atlas-SNP SLC25A47 283600 hgsc.bcm.edu 37 14 100795800 100795800 + Missense_Mutation SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 56.0 12.0 75.0 0.0 0.214286 0 . . none . SLC25A47 36 . NM_207117 exon6 c.G745A p.G249R GCAGACGGGCAGG . PASS Atlas-SNP FAF2 23197 hgsc.bcm.edu 37 5 175913491 175913491 + Splice_Site SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 108.0 45.0 114.0 0.0 0.416667 0 . . none . FAF2 38 . NM_014613 exon3 c.267+1G>A . CCAAGGGCAAGTT . PASS Atlas-SNP P2RY8 286530 hgsc.bcm.edu 37 X 1584688 1584688 + Missense_Mutation SNP A A G novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 54.0 26.0 98.0 0.0 0.481481 0 . . none . P2RY8 53 . NM_178129 exon2 c.T764C p.F255S AGCACGAAGTTGT . PASS Atlas-SNP LAMA5 3911 hgsc.bcm.edu 37 20 60909029 60909029 + Missense_Mutation SNP T T C novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 97.0 35.0 122.0 0.0 0.360825 0 . . none . LAMA5 268 . NM_005560 exon23 c.A2806G p.N936D CCCGGTTGACGTA . PASS Atlas-SNP ZNF160 90338 hgsc.bcm.edu 37 19 53573446 53573446 + Missense_Mutation SNP T T C novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 181.0 28.0 221.0 0.0 0.154696 0 . . none . ZNF160 75 . NM_001102603 exon7 c.A341G p.H114R ACTGTGTGGAATA . PASS Atlas-SNP ROBO3 64221 hgsc.bcm.edu 37 11 124748633 124748633 + Silent SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 24.0 9.0 37.0 0.0 0.375 0 . . none . ROBO3 199 . NM_022370 exon23 c.C3474T p.P1158P TACACCCTCACCT . PASS Atlas-SNP LMAN1L 79748 hgsc.bcm.edu 37 15 75108518 75108518 + Missense_Mutation SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 31.0 15.0 44.0 0.0 0.483871 0 . . none . LMAN1L 43 . NM_021819 exon2 c.G196A p.E66K CTGGAGGAAGTGC . PASS Atlas-SNP MLL4 8085 hgsc.bcm.edu 37 19 36218067 36218067 + Silent SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 65.0 17.0 106.0 0.0 0.261538 0 . . none . MLL4 229 . NM_014727 exon15 c.C4014T p.C1338C CTACTGCCCGATC . PASS Atlas-SNP UBB 7314 hgsc.bcm.edu 37 17 16285294 16285294 + Missense_Mutation SNP A A T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 93.0 20.0 111.0 0.0 0.215054 0 . . none . UBB 30 . NM_018955 exon2 c.A73T p.N25Y ATCGAAAATGTGA . PASS Atlas-SNP NUP62 23636 hgsc.bcm.edu 37 19 50412090 50412090 + Silent SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 44.0 16.0 78.0 0.0 0.363636 0 . . none . NUP62 50 . NM_153719 exon3 c.C975T p.S325S GGCGGAGCTGGCA . PASS Atlas-SNP HSP90AB1 3326 hgsc.bcm.edu 37 6 44218144 44218144 + Silent SNP A A C novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 119.0 16.0 98.0 0.0 0.134454 0 . . none . HSP90AB1 83 . NM_007355 exon6 c.A765C p.S255S GGGTTCAGATGAG . PASS Atlas-SNP TMEM245 23731 hgsc.bcm.edu 37 9 111849490 111849490 + Missense_Mutation SNP A A C novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 129.0 45.0 94.0 0.0 0.348837 0 . . none . . . . NM_032012 exon6 c.T1283G p.V428G AGCCCGACAATGG . PASS Atlas-SNP FREM1 158326 hgsc.bcm.edu 37 9 14775791 14775791 + Missense_Mutation SNP A A C novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 261.0 54.0 157.0 0.0 0.206897 0 . . none . FREM1 261 . NM_144966 exon26 c.T4853G p.I1618S GCCTGAATGGTGA . PASS Atlas-SNP ITPKB 3707 hgsc.bcm.edu 37 1 226924346 226924346 + Missense_Mutation SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 67.0 25.0 78.0 0.0 0.373134 0 . . none . ITPKB 158 . NM_002221 exon2 c.G814A p.A272T CCATAGCTGTGGG . PASS Atlas-SNP STAP2 55620 hgsc.bcm.edu 37 19 4333777 4333777 + Missense_Mutation SNP G G C novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 63.0 15.0 74.0 0.0 0.238095 0 . . none . STAP2 38 . NM_001013841 exon3 c.C211G p.L71V CTGTGAGTTTCTC . PASS Atlas-SNP FAM9A 171482 hgsc.bcm.edu 37 X 8763298 8763298 + Missense_Mutation SNP C C G novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 75.0 30.0 84.0 0.0 0.4 0 . . none . FAM9A 57 . NM_174951 exon7 c.G652C p.V218L CTACTACTATTAC . PASS Atlas-SNP GEMIN4 50628 hgsc.bcm.edu 37 17 648463 648463 + Silent SNP G G C novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 32.0 11.0 62.0 0.0 0.34375 0 . . none . GEMIN4 116 . NM_015721 exon2 c.C2820G p.V940V GAGTTTGACCACG . PASS Atlas-SNP LRRC23 10233 hgsc.bcm.edu 37 12 7016547 7016547 + Missense_Mutation SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 85.0 28.0 101.0 0.0 0.329412 0 . . none LRRC23,colon,carcinoma,0,2 LRRC23 46 2 NM_001135217 exon5 c.C559T p.R187W GAGCTTCGGGGGA . PASS Atlas-SNP TLN1 7094 hgsc.bcm.edu 37 9 35704399 35704399 + Missense_Mutation SNP C C T rs149639715 bycluster;byfrequency;by1000genomes TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 148.0 15.0 82.0 0.0 0.101351 0 C|0.998;T|0.002 0.002 strong . TLN1 185 . NM_006289 exon45 c.G5977A p.D1993N TGGTGTCGAGGTC . PASS Atlas-SNP CDH2 1000 hgsc.bcm.edu 37 18 25563042 25563042 + Missense_Mutation SNP C C A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 177.0 20.0 172.0 0.0 0.112994 0 . . none . CDH2 194 . NM_001792 exon14 c.G2215T p.V739L TCAGCACAAGGAC . PASS Atlas-SNP UMODL1 89766 hgsc.bcm.edu 37 21 43547122 43547122 + Silent SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 106.0 33.0 97.0 0.0 0.311321 0 . . none . UMODL1 186 . NM_173568 exon18 c.C3684T p.Y1228Y GGTTTACACCATC . PASS Atlas-SNP DCSTAMP 81501 hgsc.bcm.edu 37 8 105367391 105367391 + Missense_Mutation SNP G G A rs139698540 TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 109.0 10.0 94.0 0.0 0.0917431 0 G|1.000;A|0.000 0.000 weak . . . . NM_030788 exon3 c.G1316A p.R439Q AAAGACGGCTGAG . PASS Atlas-SNP MUSK 4593 hgsc.bcm.edu 37 9 113538189 113538189 + Missense_Mutation SNP A A C novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 326.0 92.0 244.0 0.0 0.282209 0 . . none . MUSK 112 . NM_005592 exon9 c.A1306C p.K436Q TGCAGCAAGCTTC . PASS Atlas-SNP AP3B1 8546 hgsc.bcm.edu 37 5 77412011 77412011 + Silent SNP A A T rs42360 bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 147.0 15.0 117.0 0.0 0.102041 0 A|0.776;C|0.001 . alt AP3B1,NS,carcinoma,0,1 AP3B1 94 1 NM_003664 exon18 c.T2016A p.A672A CTTCTTAGCAGAA . PASS Atlas-SNP ILK 3611 hgsc.bcm.edu 37 11 6629314 6629314 + Missense_Mutation SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 81.0 12.0 116.0 0.0 0.148148 0 . . none ILK_ENST00000299421,NS,malignant_melanoma,0,1 ILK 41 1 NM_001014794 exon3 c.G128A p.R43Q CCTGCCGAGAGGG . PASS Atlas-SNP EXOC4 60412 hgsc.bcm.edu 37 7 132959870 132959870 + Missense_Mutation SNP C C T rs201300506 bycluster TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 72.0 16.0 103.0 0.0 0.222222 0 C|0.999;T|0.001 0.001 weak EXOC4,NS,carcinoma,-1,2 EXOC4 118 2 NM_021807 exon2 c.C220T p.R74C GCCATTCGCACAT . PASS Atlas-SNP PCDH11X 27328 hgsc.bcm.edu 37 X 91518117 91518117 + Missense_Mutation SNP A A T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 583.0 183.0 873.0 0.0 0.313894 0 . . none . PCDH11X 714 . NM_001168361 exon4 c.A3119T p.K1040I AGCGGAAATCTGA . PASS Atlas-SNP PCDH11X 27328 hgsc.bcm.edu 37 X 91134203 91134203 + Silent SNP C C A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 175.0 27.0 251.0 0.0 0.154286 0 . . none . PCDH11X 714 . NM_001168363 exon2 c.C2964A p.P988P AGATCCCTACAGC . PASS Atlas-SNP RIMS1 22999 hgsc.bcm.edu 37 6 72596832 72596832 + Missense_Mutation SNP A A G novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 48.0 22.0 116.0 0.0 0.458333 0 . . none . RIMS1 278 . NM_014989 exon1 c.A106G p.I36V AACATTATCATGG . PASS Atlas-SNP CAMK2G 818 hgsc.bcm.edu 37 10 75608359 75608359 + Missense_Mutation SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 85.0 22.0 71.0 0.0 0.258824 0 . . none . CAMK2G 79 . NM_172170 exon8 c.G526A p.G176S GGGTGCCAGCAAA . PASS Atlas-SNP NFATC2IP 84901 hgsc.bcm.edu 37 16 28962525 28962525 + Missense_Mutation SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 182.0 25.0 175.0 0.0 0.137363 0 . . none . NFATC2IP 24 . NM_032815 exon1 c.C193T p.R65C ACCGCTCGCGGTG . PASS Atlas-SNP LRRN1 57633 hgsc.bcm.edu 37 3 3888234 3888234 + Missense_Mutation SNP G G C novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 128.0 26.0 180.0 0.0 0.203125 0 . . none . LRRN1 82 . NM_020873 exon2 c.G1909C p.G637R GTAATGGGGTCTA . PASS Atlas-SNP RPL10L 140801 hgsc.bcm.edu 37 14 47120688 47120688 + Silent SNP G G C novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 68.0 20.0 113.0 0.0 0.294118 0 . . none . RPL10L 64 . NM_080746 exon1 c.C252G p.G84G GTGAAAGCCATCT . PASS Atlas-SNP ZCCHC8 55596 hgsc.bcm.edu 37 12 122962423 122962423 + Missense_Mutation SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 119.0 31.0 130.0 0.0 0.260504 0 . . none . ZCCHC8 56 . NM_017612 exon13 c.C1310T p.S437L CCCGCTGAGTTGC . PASS Atlas-SNP BAI3 577 hgsc.bcm.edu 37 6 70098685 70098685 + Missense_Mutation SNP G G A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 81.0 35.0 87.0 0.0 0.432099 0 . . none BAI3,colon,carcinoma,0,1 BAI3 451 1 NM_001704 exon32 c.G4471A p.E1491K GACACAGAGGCAA . PASS Atlas-SNP CACNA2D2 9254 hgsc.bcm.edu 37 3 50405270 50405270 + Missense_Mutation SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 134.0 21.0 132.0 1.0 0.156716 0.00757576 . . none CACNA2D2,colon,carcinoma,-1,2 CACNA2D2 82 2 NM_001174051 exon26 c.G2228A p.R743H CACACACGCTCTA . scavenged Atlas-SNP EVC 2121 hgsc.bcm.edu 37 4 5811337 5811337 + Silent SNP A A G novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 53.0 16.0 60.0 0.0 0.301887 0 . . none EVC,right_lower_lobe,carcinoma,0,1 EVC 90 1 NM_153717 exon19 c.A2781G p.L927L GCTGCTAGGTGAG . PASS Atlas-SNP MLL3 58508 hgsc.bcm.edu 37 7 151902302 151902302 + Missense_Mutation SNP C C T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 234.0 74.0 306.0 0.0 0.316239 0 . . none . MLL3 1564 . NM_170606 exon25 c.G3850A p.G1284R TAAATCCACCAAT . PASS Atlas-SNP ATR 545 hgsc.bcm.edu 37 3 142281284 142281284 + Missense_Mutation SNP C C A novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 177.0 61.0 162.0 0.0 0.344633 0 . . none . ATR 285 . NM_001184 exon4 c.G960T p.M320I CAGCAGCATATTT . PASS Atlas-SNP PHF12 57649 hgsc.bcm.edu 37 17 27248804 27248804 + Missense_Mutation SNP C C G novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 235.0 74.0 263.0 0.0 0.314894 0 . . none . PHF12 69 . NM_020889 exon5 c.G738C p.K246N TTCCTCCTTTCTT . PASS Atlas-SNP COL14A1 7373 hgsc.bcm.edu 37 8 121219273 121219273 + Silent SNP A A T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 183.0 65.0 111.0 0.0 0.355191 0 . . none . COL14A1 292 . NM_021110 exon10 c.A1131T p.P377P TGCCCCAGGAAAT . PASS Atlas-SNP TTF1 7270 hgsc.bcm.edu 37 9 135261984 135261984 + Missense_Mutation SNP A A T novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 408.0 86.0 375.0 0.0 0.210784 0 . . none . TTF1 82 . NM_007344 exon9 c.T2337A p.D779E ATTAGTATCTTCC . PASS Atlas-SNP GPR183 1880 hgsc.bcm.edu 37 13 99948277 99948277 + Silent SNP G G C novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 173.0 41.0 218.0 1.0 0.236994 0.00458716 . . none GPR183,NS,carcinoma,-2,1 GPR183 38 1 NM_004951 exon2 c.C123G p.V41V GATGAAGACGAGG . scavenged Atlas-SNP PGBD4 161779 hgsc.bcm.edu 37 15 34396402 34396402 + Missense_Mutation SNP A A G novel TCGA-GS-A9TW-01A-11D-A382-10 TCGA-GS-A9TW-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0c78bd1a-f7eb-4456-8210-f115aa079df5 e592ed1e-4fa3-459e-8256-01b5e2dc09ce 46.0 14.0 41.0 0.0 0.304348 0 . . none . PGBD4 58 . NM_152595 exon1 c.A1670G p.K557R TCCGGAAAGAAAC . PASS Atlas-SNP