Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ABCB5	0	genome.wustl.edu	37	7	20768053	20768053	+	Nonsense_Mutation	SNP	C	C	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	7	20768053	20768053	C	T	SNP	ABCB5	ENST00000258738	human	ensembl	74_37	+1	known	nonsense	c.1507	p.R503*	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB5	HGNC	ENSG00000004846	tier1	-	-	45	0	0.00	21	11	34.38
ADA	0	genome.wustl.edu	37	20	43255195	43255195	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	20	43255195	43255195	C	A	SNP	ADA	ENST00000372874	human	ensembl	74_37	-1	known	missense	c.264	p.E88D	1.000	pfam_A/AMP_deaminase_dom,tigrfam_Ado/ade_deaminase	pfam_A/AMP_deaminase_dom,tigrfam_Ado/ade_deaminase	-	no_errors	ADA	HGNC	ENSG00000196839				58	0	0.00	37	2	5.13
ADAMTSL4	0	genome.wustl.edu	37	1	150529724	150529724	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	1	150529724	150529724	C	T	SNP	ADAMTSL4	ENST00000369039	human	ensembl	74_37	+1	known	missense	c.2029	p.P677S	0.510	NULL	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL4	HGNC	ENSG00000143382	tier1	-	-	31	0	0.00	16	6	27.27
ADRA2A	0	genome.wustl.edu	37	10	112837931	112837931	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	10	112837931	112837931	G	T	SNP	ADRA2A	ENST00000280155	human	ensembl	74_37	+1	known	missense	c.177	p.M59I	1.000	pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_GPCR_Rhodpsn,prints_Musac_Ach_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRA2A_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam,prints_Musac_Ach_rcpt	-	no_errors	ADRA2A	HGNC	ENSG00000150594	tier1	-	-	61	0	0.00	28	9	24.32
ARHGAP31	0	genome.wustl.edu	37	3	119101244	119101244	+	Silent	SNP	C	C	G			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	3	119101244	119101244	C	G	SNP	ARHGAP31	ENST00000264245	human	ensembl	74_37	+1	known	silent	c.537	p.L179	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP31	HGNC	ENSG00000031081	tier1	-	-	40	0	0.00	28	19	40.43
ARID2	0	genome.wustl.edu	37	12	46230371	46230371	+	Splice_Site	SNP	G	G	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	12	46230371	46230371	G	T	SNP	ARID2	ENST00000334344	human	ensembl	74_37	+1	known	splice_site	c.706-1	e7-1	1.000	-	-	-	no_errors	ARID2	HGNC	ENSG00000189079				54	0	0.00	31	2	5.88
ARRDC2	0	genome.wustl.edu	37	19	18119840	18119840	+	Silent	SNP	C	C	A			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	19	18119840	18119840	C	A	SNP	ARRDC2	ENST00000222250	human	ensembl	74_37	+1	known	silent	c.402	p.T134	0.998	pfam_Arrestin-like_N,superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set	-	no_errors	ARRDC2	HGNC	ENSG00000105643	tier1	-	-	79	0	0.00	31	27	45.76
ATF4	0	genome.wustl.edu	37	22	39917608	39917609	+	Frame_Shift_Ins	INS	-	-	G			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	22	39917608	39917609	-	G	INS	ATF4	ENST00000337304	human	ensembl	74_37	+1	known	frame_shift_ins	c.158_159	p.A54fs	1.000:1.000	NULL	pfam_bZIP,smart_bZIP,pfscan_bZIP	-	no_errors	ATF4	HGNC	ENSG00000128272	tier1			33	0	0.00	20	4	16.67
BTN3A3	0	genome.wustl.edu	37	6	26452349	26452349	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	6	26452349	26452349	G	T	SNP	BTN3A3	ENST00000244519	human	ensembl	74_37	+1	known	missense	c.1465	p.A489S	0.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like_dom,prints_Butyrophylin	-	no_errors	BTN3A3	HGNC	ENSG00000111801				80	0	0.00	45	3	6.25
C11orf95	0	genome.wustl.edu	37	11	63531137	63531137	+	RNA	SNP	C	C	A			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	11	63531137	63531137	C	A	SNP	C11orf95	ENST00000433688	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	C11orf95	HGNC	ENSG00000188070	tier1	-	-	47	0	0.00	21	29	58.00
C1orf87	0	genome.wustl.edu	37	1	60503712	60503712	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	1	60503712	60503712	G	T	SNP	C1orf87	ENST00000371201	human	ensembl	74_37	-1	known	missense	c.815	p.A272E	0.000	NULL	NULL	-	no_errors	C1orf87	HGNC	ENSG00000162598				55	0	0.00	44	4	8.33
CALM3	0	genome.wustl.edu	37	19	47112431	47112431	+	RNA	SNP	G	G	A			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	19	47112431	47112431	G	A	SNP	CALM3	ENST00000477244	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.793	-	-	-	no_errors	CALM3	HGNC	ENSG00000160014	tier1	-	-	54	0	0.00	43	8	15.69
CASP2	0	genome.wustl.edu	37	7	142997478	142997478	+	RNA	SNP	A	A	G			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	7	142997478	142997478	A	G	SNP	CASP2	ENST00000493642	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CASP2	HGNC	ENSG00000106144	tier1	-	-	48	0	0.00	10	22	68.75
CATSPERG	0	genome.wustl.edu	37	19	38837227	38837227	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	19	38837227	38837227	G	T	SNP	CATSPERG	ENST00000409235	human	ensembl	74_37	+1	known	missense	c.807	p.K269N	0.002	NULL	NULL	-	no_errors	CATSPERG	HGNC	ENSG00000099338	tier1	-	-	62	0	0.00	53	4	7.02
CCSER1	0	genome.wustl.edu	37	4	91230145	91230145	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	4	91230145	91230145	G	T	SNP	CCSER1	ENST00000333691	human	ensembl	74_37	+1	known	missense	c.710	p.R237L	0.026	NULL	NULL	-	no_errors	CCSER1	HGNC	ENSG00000184305	tier1	-	-	35	0	0.00	20	3	13.04
CDH13	0	genome.wustl.edu	37	16	83711879	83711879	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	16	83711879	83711879	G	A	SNP	CDH13	ENST00000566620	human	ensembl	74_37	+1	known	missense	c.1351	p.V451I	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH13	HGNC	ENSG00000140945	tier1	-	-	76	0	0.00	26	9	25.71
CDKN2A	0	genome.wustl.edu	37	9	21994151	21994151	+	Frame_Shift_Del	DEL	A	A	-			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	9	21994151	21994151	A	-	DEL	CDKN2A	ENST00000361570	human	ensembl	74_37	-1	known	frame_shift_del	c.303	p.P102fs	0.976	NULL	pfam_Cyclin_kinase-Inhib_2A	-	no_errors	CDKN2A	HGNC	ENSG00000147889	tier1			117	0	0.00	14	2	12.50
CECR2	0	genome.wustl.edu	37	22	18003287	18003287	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	22	18003287	18003287	G	T	SNP	CECR2	ENST00000400573	human	ensembl	74_37	+1	novel	missense	c.1032	p.K344N	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	CECR2	HGNC	ENSG00000099954	tier1	-	-	59	0	0.00	9	19	67.86
CEP192	0	genome.wustl.edu	37	18	13015442	13015442	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	18	13015442	13015442	C	G	SNP	CEP192	ENST00000506447	human	ensembl	74_37	+1	known	missense	c.635	p.S212C	0.995	NULL	NULL	-	no_errors	CEP192	HGNC	ENSG00000101639	tier1	-	-	38	0	0.00	8	11	57.89
CHST5	0	genome.wustl.edu	37	16	75563364	75563364	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	16	75563364	75563364	G	A	SNP	CHST5	ENST00000541075	human	ensembl	74_37	-1	known	missense	c.937	p.R313C	0.016	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST5	HGNC	ENSG00000135702	tier1	-	-	46	0	0.00	15	7	31.82
CIRH1A	0	genome.wustl.edu	37	16	69173784	69173785	+	Frame_Shift_Ins	INS	-	-	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	16	69173784	69173785	-	T	INS	CIRH1A	ENST00000314423	human	ensembl	74_37	+1	known	frame_shift_ins	c.493_494	p.D166fs	1.000:1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Quinonprotein_ADH-like_supfam,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CIRH1A	HGNC	ENSG00000141076	tier1			115	0	0.00	33	9	21.43
CLASRP	0	genome.wustl.edu	37	19	45567607	45567609	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	19	45567607	45567609	CTC	0	DEL	CLASRP	ENST00000221455	human	ensembl	74_37	+1	known	in_frame_del	c.1128_1130	p.S380in_frame_del	1.000:1.000:1.000	NULL	pfam_SWAP_N_domain	-	no_errors	CLASRP	HGNC	ENSG00000104859				17	0	0.00	9	2	18.18
CLEC4D	0	genome.wustl.edu	37	12	8673805	8673805	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	12	8673805	8673805	G	T	SNP	CLEC4D	ENST00000299665	human	ensembl	74_37	+1	known	missense	c.586	p.D196Y	0.001	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC4D	HGNC	ENSG00000166527				28	0	0.00	37	2	5.13
CNOT1	0	genome.wustl.edu	37	16	58615277	58615277	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	16	58615277	58615277	T	C	SNP	CNOT1	ENST00000317147	human	ensembl	74_37	-1	known	missense	c.1187	p.Y396C	1.000	NULL	pfam_CCR4-Not_Not1_C,superfamily_ARM-type_fold	-	no_errors	CNOT1	HGNC	ENSG00000125107	tier1	-	-	88	0	0.00	36	11	23.40
COLGALT1	0	genome.wustl.edu	37	19	17692130	17692130	+	Silent	SNP	C	C	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	19	17692130	17692130	C	T	SNP	COLGALT1	ENST00000252599	human	ensembl	74_37	+1	known	silent	c.1746	p.V582	0.979	NULL	pfam_Glyco_trans_25	-	no_errors	COLGALT1	HGNC	ENSG00000130309	tier1	-	-	42	0	0.00	26	8	23.53
COX6C	0	genome.wustl.edu	37	8	100904210	100904210	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	8	100904210	100904210	G	A	SNP	COX6C	ENST00000297564	human	ensembl	74_37	-1	known	missense	c.40	p.L14F	1.000	pfam_COX6C	pfam_COX6C	-	no_errors	COX6C	HGNC	ENSG00000164919	tier1	-	-	10	0	0.00	4	5	55.56
CSF1R	0	genome.wustl.edu	37	5	149449523	149449523	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	5	149449523	149449523	C	T	SNP	CSF1R	ENST00000286301	human	ensembl	74_37	-1	known	missense	c.1423	p.E475K	0.000	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	CSF1R	HGNC	ENSG00000182578	tier1	-	-	59	0	0.00	26	8	23.53
DCAF16	0	genome.wustl.edu	37	4	17805701	17805701	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	4	17805701	17805701	T	C	SNP	DCAF16	ENST00000382247	human	ensembl	74_37	-1	known	missense	c.64	p.I22V	0.000	NULL	NULL	-	no_errors	DCAF16	HGNC	ENSG00000163257	tier1	-	-	28	0	0.00	10	13	56.52
DET1	0	genome.wustl.edu	37	15	89074355	89074355	+	Silent	SNP	A	A	G			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	15	89074355	89074355	A	G	SNP	DET1	ENST00000444300	human	ensembl	74_37	-1	known	silent	c.615	p.H205	0.838	pfam_De-etiolated_protein_1_Det1	pfam_De-etiolated_protein_1_Det1	-	no_errors	DET1	HGNC	ENSG00000140543	tier1	-	-	82	0	0.00	37	27	42.19
DPCR1	0	genome.wustl.edu	37	6	30919708	30919708	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	6	30919708	30919708	A	G	SNP	DPCR1	ENST00000462446	human	ensembl	74_37	+1	novel	missense	c.3467	p.H1156R	0.000	NULL	NULL	-	no_errors	DPCR1	HGNC	ENSG00000168631	tier1	-	-	31	0	0.00	6	3	33.33
DSE	0	genome.wustl.edu	37	6	116747882	116747882	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	6	116747882	116747882	A	T	SNP	DSE	ENST00000537543	human	ensembl	74_37	+1	known	missense	c.619	p.M207L	1.000	superfamily_Chondroitin_lyas	superfamily_Chondroitin_lyas	-	no_errors	DSE	HGNC	ENSG00000111817	tier1	-	-	76	0	0.00	53	12	18.18
ENSG00000271959	0	genome.wustl.edu	37	8	142445540	142445540	+	RNA	SNP	T	T	C			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	8	142445540	142445540	T	C	SNP	ENSG00000271959	ENST00000606664	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTD-3064M3.7	Clone_based_vega_gene	ENSG00000271959	tier1	rs13262445	-	22	0	0.00	16	5	23.81
ERMP1	0	genome.wustl.edu	37	9	5784880	5784880	+	RNA	DEL	T	T	-			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	9	5784880	5784880	T	-	DEL	ERMP1	ENST00000214893	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	ERMP1	HGNC	ENSG00000099219	tier1			11	0	0.00	2	4	66.67
FAM178A	0	genome.wustl.edu	37	10	102672870	102672870	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	10	102672870	102672870	G	T	SNP	FAM178A	ENST00000370269	human	ensembl	74_37	+1	known	missense	c.3	p.M1I	1.000	NULL	NULL	-	no_errors	FAM178A	HGNC	ENSG00000119906				44	0	0.00	25	3	10.71
FAM230B	0	genome.wustl.edu	37	22	21537734	21537734	+	RNA	SNP	A	A	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	22	21537734	21537734	A	T	SNP	FAM230B	ENST00000451257	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.114	-	-	-	no_errors	FAM230B	HGNC	ENSG00000215498	tier1	-	-	69	0	0.00	28	3	9.68
FILIP1	0	genome.wustl.edu	37	6	76024322	76024322	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	6	76024322	76024322	T	C	SNP	FILIP1	ENST00000237172	human	ensembl	74_37	-1	known	missense	c.1226	p.K409R	1.000	NULL	pfam_Cortactin-binding_p2_N,prints_Tropomyosin	-	no_errors	FILIP1	HGNC	ENSG00000118407	tier1	-	-	78	0	0.00	45	9	16.36
FLG	0	genome.wustl.edu	37	1	152279527	152279527	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	1	152279527	152279527	T	C	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.7835	p.D2612G	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	tier1	rs200423945	-	51	0	0.00	26	4	13.33
FOXJ2	0	genome.wustl.edu	37	12	8196342	8196342	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	12	8196342	8196342	A	G	SNP	FOXJ2	ENST00000162391	human	ensembl	74_37	+1	known	missense	c.454	p.R152G	1.000	smart_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXJ2	HGNC	ENSG00000065970	tier1	-	-	68	0	0.00	53	44	45.36
FRMD1	0	genome.wustl.edu	37	6	168479699	168479699	+	Nonsense_Mutation	SNP	G	G	A			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	6	168479699	168479699	G	A	SNP	FRMD1	ENST00000283309	human	ensembl	74_37	-1	known	nonsense	c.76	p.R26*	0.001	NULL	pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	-	no_errors	FRMD1	HGNC	ENSG00000153303	tier1	-	-	77	0	0.00	57	12	17.39
GDI2	0	genome.wustl.edu	37	10	5807199	5807199	+	RNA	SNP	T	T	C			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	10	5807199	5807199	T	C	SNP	GDI2	ENST00000479928	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	GDI2	HGNC	ENSG00000057608	tier1	-	-	32	0	0.00	16	5	23.81
GMEB1	0	genome.wustl.edu	37	1	29030774	29030774	+	Silent	SNP	G	G	A			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	1	29030774	29030774	G	A	SNP	GMEB1	ENST00000294409	human	ensembl	74_37	+1	known	silent	c.831	p.Q277	0.998	NULL	pfam_SAND_dom,superfamily_SAND_dom-like,smart_SAND_dom,pfscan_SAND_dom	-	no_errors	GMEB1	HGNC	ENSG00000162419	tier1	-	-	42	0	0.00	11	13	54.17
GRAMD3	0	genome.wustl.edu	37	5	125821384	125821384	+	Nonsense_Mutation	SNP	C	C	A			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	5	125821384	125821384	C	A	SNP	GRAMD3	ENST00000542322	human	ensembl	74_37	+1	known	nonsense	c.1001	p.S334*	0.997	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD3	HGNC	ENSG00000155324	tier1	-	-	67	0	0.00	29	33	53.23
GRHL2	0	genome.wustl.edu	37	8	102570742	102570742	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	8	102570742	102570742	A	G	SNP	GRHL2	ENST00000251808	human	ensembl	74_37	+1	known	missense	c.380	p.N127S	1.000	NULL	pfam_CP2	-	no_errors	GRHL2	HGNC	ENSG00000083307	tier1	-	-	38	0	0.00	38	12	23.53
HNF4A	0	genome.wustl.edu	37	20	43058230	43058230	+	Silent	SNP	G	G	A			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	20	43058230	43058230	G	A	SNP	HNF4A	ENST00000316099	human	ensembl	74_37	+1	known	silent	c.1350	p.P450	0.944	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF,prints_Retinoid-X_rcpt/HNF4	-	no_errors	HNF4A	HGNC	ENSG00000101076	tier1	-	-	108	0	0.00	49	35	41.67
ITFG3	0	genome.wustl.edu	37	16	318798	318798	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	16	318798	318798	A	T	SNP	ITFG3	ENST00000450082	human	ensembl	74_37	+1	known	missense	c.1569	p.R523S	0.001	NULL	superfamily_Quinonprotein_ADH-like_supfam	-	no_errors	ITFG3	HGNC	ENSG00000167930	tier1	-	-	68	0	0.00	29	16	35.56
JRK	0	genome.wustl.edu	37	8	143746717	143746717	+	RNA	SNP	T	T	C			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	8	143746717	143746717	T	C	SNP	JRK	ENST00000422119	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.041	-	-	-	no_errors	JRK	HGNC	ENSG00000234616	tier1	-	-	37	0	0.00	44	18	29.03
KPNA4	0	genome.wustl.edu	37	3	160227638	160227638	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	3	160227638	160227638	C	T	SNP	KPNA4	ENST00000334256	human	ensembl	74_37	-1	known	missense	c.1159	p.E387K	1.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,pfam_Importin-a_IBB,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA4	HGNC	ENSG00000186432	tier1	-	-	56	0	0.00	49	10	16.95
LCN1	0	genome.wustl.edu	37	9	138413998	138413998	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	9	138413998	138413998	A	T	SNP	LCN1	ENST00000263598	human	ensembl	74_37	+1	known	missense	c.196	p.N66Y	0.513	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_von_Ebner_gland	-	no_errors	LCN1	HGNC	ENSG00000160349	tier1	-	-	107	0	0.00	27	83	75.45
LNX1	0	genome.wustl.edu	37	4	54362373	54362373	+	Silent	SNP	G	G	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	4	54362373	54362373	G	T	SNP	LNX1	ENST00000263925	human	ensembl	74_37	-1	known	silent	c.1167	p.P389	0.001	pfam_PDZ,superfamily_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING	-	no_errors	LNX1	HGNC	ENSG00000072201	tier1	-	-	74	0	0.00	64	4	5.88
LOC100133077	0	genome.wustl.edu	37	9	140777395	140777395	+	RNA	SNP	C	C	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	9	140777395	140777395	C	T	SNP	LOC100133077	ENST00000371390	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-188C12.3	Clone_based_vega_gene	ENSG00000203987	tier1	-	-	56	0	0.00	33	4	10.81
LOC100294362	0	genome.wustl.edu	37	17	78328011	78328011	+	RNA	SNP	C	C	G			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	17	78328011	78328011	C	G	SNP	LOC100294362	ENST00000575034	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTD-2047H16.4	Clone_based_vega_gene	ENSG00000263069	tier1	-	-	13	0	0.00	3	9	75.00
LOC100507291	0	genome.wustl.edu	37	3	139302147	139302147	+	RNA	SNP	T	T	C			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	3	139302147	139302147	T	C	SNP	LOC100507291	ENST00000515247	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-319G6.1	Clone_based_vega_gene	ENSG00000248932	tier1	-	-	115	0	0.00	69	50	42.02
MAP3K19	0	genome.wustl.edu	37	2	135749143	135749143	+	Silent	SNP	C	C	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	2	135749143	135749143	C	T	SNP	MAP3K19	ENST00000375845	human	ensembl	74_37	-1	known	silent	c.582	p.S194	0.005	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K19	HGNC	ENSG00000176601				40	0	0.00	32	2	5.71
MARK1	0	genome.wustl.edu	37	1	220791724	220791724	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	1	220791724	220791724	G	T	SNP	MARK1	ENST00000366917	human	ensembl	74_37	+1	known	missense	c.625	p.V209F	0.983	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_KA1_dom,superfamily_Kinase-like_dom,superfamily_KA1/Ssp2_C,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_UBA/transl_elong_EF1B_N_euk,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	MARK1	HGNC	ENSG00000116141				63	0	0.00	34	2	5.56
MAT2B	0	genome.wustl.edu	37	5	162943690	162943690	+	Silent	SNP	C	C	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	5	162943690	162943690	C	T	SNP	MAT2B	ENST00000321757	human	ensembl	74_37	+1	known	silent	c.693	p.C231	1.000	pfam_dTDP_dehydrorham_reduct,pfam_Epimerase_deHydtase,pfam_3Beta_OHSteriod_DH/Estase	pfam_dTDP_dehydrorham_reduct,pfam_Epimerase_deHydtase,pfam_Polysac_CapD-like,pfam_3Beta_OHSteriod_DH/Estase	-	no_errors	MAT2B	HGNC	ENSG00000038274				99	0	0.00	48	4	7.69
MBL1P	0	genome.wustl.edu	37	10	81666392	81666392	+	RNA	SNP	A	A	G			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	10	81666392	81666392	A	G	SNP	MBL1P	ENST00000453174	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MBL1P	HGNC	ENSG00000242600	tier1	-	-	293	0	0.00	257	54	17.36
MFN1	0	genome.wustl.edu	37	3	179069778	179069778	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	3	179069778	179069778	G	A	SNP	MFN1	ENST00000263969	human	ensembl	74_37	+1	known	missense	c.203	p.G68D	0.997	superfamily_P-loop_NTPase	pfam_Fzo/mitofusin_HR2,pfam_Dynamin_GTPase,superfamily_P-loop_NTPase	-	no_errors	MFN1	HGNC	ENSG00000171109	tier1	-	-	85	0	0.00	44	29	39.73
MFSD5	0	genome.wustl.edu	37	12	53647345	53647345	+	Silent	SNP	C	C	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	12	53647345	53647345	C	T	SNP	MFSD5	ENST00000534842	human	ensembl	74_37	+1	known	silent	c.1047	p.C349	1.000	pfam_DUF791,pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_DUF791,pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD5	HGNC	ENSG00000182544				79	0	0.00	42	5	10.64
MGAT3	0	genome.wustl.edu	37	22	39883900	39883900	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	22	39883900	39883900	G	A	SNP	MGAT3	ENST00000341184	human	ensembl	74_37	+1	known	missense	c.548	p.G183D	0.998	pfam_Glyco_trans_17	pfam_Glyco_trans_17	-	no_errors	MGAT3	HGNC	ENSG00000128268	tier1	-	-	27	0	0.00	17	6	26.09
MIR567	0	genome.wustl.edu	37	3	111831724	111831724	+	RNA	DEL	A	A	-			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	3	111831724	111831724	A	-	DEL	MIR567	ENST00000385205	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MIR567	HGNC	ENSG00000207940	tier1			45	0	0.00	41	3	6.82
MIR624	0	genome.wustl.edu	37	14	31483858	31483858	+	RNA	SNP	G	G	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	14	31483858	31483858	G	T	SNP	MIR624	ENST00000385217	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MIR624	HGNC	ENSG00000207952	tier1	-	-	94	0	0.00	57	6	9.52
MOG	0	genome.wustl.edu	37	6	29637970	29637970	+	Silent	SNP	A	A	G			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	6	29637970	29637970	A	G	SNP	MOG	ENST00000494692	human	ensembl	74_37	+1	known	silent	c.612	p.G204	0.000	pirsf_Myelin-oligodendrocyte_glycop	pirsf_Myelin-oligodendrocyte_glycop,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	MOG	HGNC	ENSG00000204655	tier1	-	-	41	0	0.00	21	13	38.24
MORC1	0	genome.wustl.edu	37	3	108723734	108723734	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	3	108723734	108723734	C	G	SNP	MORC1	ENST00000232603	human	ensembl	74_37	-1	known	missense	c.2015	p.R672T	0.009	NULL	pfam_Znf_CW,superfamily_HATPase_ATP-bd,pfscan_Znf_CW	-	no_errors	MORC1	HGNC	ENSG00000114487	tier1	-	-	36	0	0.00	23	17	42.50
MPO	0	genome.wustl.edu	37	17	56356572	56356572	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	17	56356572	56356572	G	T	SNP	MPO	ENST00000340482	human	ensembl	74_37	-1	known	missense	c.778	p.R260S	0.999	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	MPO	HGNC	ENSG00000005381	tier1	-	-	28	0	0.00	13	3	18.75
MUL1	0	genome.wustl.edu	37	1	20827583	20827583	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	1	20827583	20827583	T	C	SNP	MUL1	ENST00000264198	human	ensembl	74_37	-1	known	missense	c.659	p.Y220C	1.000	pfam_MULAN	pfam_MULAN,pfscan_Znf_RING	-	no_errors	MUL1	HGNC	ENSG00000090432	tier1	-	-	48	0	0.00	19	4	17.39
NCOR2	0	genome.wustl.edu	37	12	124826549	124826549	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	12	124826549	124826549	T	C	SNP	NCOR2	ENST00000356219	human	ensembl	74_37	-1	known	missense	c.5029	p.I1677V	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR2	HGNC	ENSG00000196498	tier1	-	-	179	0	0.00	39	45	53.57
NEK7	0	genome.wustl.edu	37	1	198288588	198288588	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	1	198288588	198288588	G	T	SNP	NEK7	ENST00000367385	human	ensembl	74_37	+1	known	missense	c.845	p.R282L	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK7	HGNC	ENSG00000151414				83	0	0.00	31	2	6.06
NFATC2	0	genome.wustl.edu	37	20	50140465	50140466	+	Frame_Shift_Ins	INS	-	-	A			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	20	50140465	50140466	-	A	INS	NFATC2	ENST00000396009	human	ensembl	74_37	-1	known	frame_shift_ins	c.315_314	p.A106fs	1.000:1.000	NULL	pfam_RHD,pfam_IPT,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFATC2	HGNC	ENSG00000101096	tier1			43	0	0.00	23	8	25.81
NHSL2	0	genome.wustl.edu	37	X	71359229	71359229	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	X	71359229	71359229	C	G	SNP	NHSL2	ENST00000540800	human	ensembl	74_37	+1	known	missense	c.1831	p.H611D	0.410	NULL	NULL	-	no_errors	NHSL2	HGNC	ENSG00000204131	tier1	-	-	18	0	0.00	3	17	85.00
NSUN4	0	genome.wustl.edu	37	1	46826379	46826380	+	Frame_Shift_Ins	INS	-	-	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	1	46826379	46826380	-	T	INS	NSUN4	ENST00000474844	human	ensembl	74_37	+1	known	frame_shift_ins	c.757_758	p.V254fs	1.000:1.000	pfam_Fmu/NOL1/Nop2p,prints_RCMT	pfam_Fmu/NOL1/Nop2p,prints_RCMT	-	no_errors	NSUN4	HGNC	ENSG00000117481	tier1			57	0	0.00	27	7	20.59
NTM	0	genome.wustl.edu	37	11	131530893	131530893	+	Silent	SNP	C	C	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	11	131530893	131530893	C	T	SNP	NTM	ENST00000427481	human	ensembl	74_37	+1	known	silent	c.6	p.N2	0.053	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	NTM	HGNC	ENSG00000182667	tier1	-	-	34	0	0.00	11	7	38.89
OR11H4	0	genome.wustl.edu	37	14	20711735	20711735	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	14	20711735	20711735	A	G	SNP	OR11H4	ENST00000315409	human	ensembl	74_37	+1	known	missense	c.785	p.Y262C	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR11H4	HGNC	ENSG00000176198	tier1	-	-	109	0	0.00	21	57	73.08
OR14A16	0	genome.wustl.edu	37	1	247978881	247978881	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	1	247978881	247978881	G	A	SNP	OR14A16	ENST00000357627	human	ensembl	74_37	-1	known	missense	c.151	p.H51Y	0.004	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR14A16	HGNC	ENSG00000196772	tier1	-	-	23	0	0.00	14	5	26.32
OR2A4	0	genome.wustl.edu	37	6	132021790	132021790	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	6	132021790	132021790	T	C	SNP	OR2A4	ENST00000315453	human	ensembl	74_37	-1	known	missense	c.752	p.Y251C	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,prints_Melcrt_ACTH_rcpt	-	no_errors	OR2A4	HGNC	ENSG00000180658	tier1	-	-	64	0	0.00	20	12	37.50
OR5P3	0	genome.wustl.edu	37	11	7847098	7847098	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	11	7847098	7847098	C	T	SNP	OR5P3	ENST00000328375	human	ensembl	74_37	-1	known	missense	c.422	p.C141Y	0.003	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5P3	HGNC	ENSG00000182334	tier1	-	-	46	0	0.00	24	3	11.11
OR8A1	0	genome.wustl.edu	37	11	124440069	124440069	+	Silent	SNP	G	G	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	11	124440069	124440069	G	T	SNP	OR8A1	ENST00000284287	human	ensembl	74_37	+1	known	silent	c.105	p.T35	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8A1	HGNC	ENSG00000196119				41	0	0.00	27	2	6.90
OR8H3	0	genome.wustl.edu	37	11	55890163	55890163	+	Silent	SNP	C	C	G			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	11	55890163	55890163	C	G	SNP	OR8H3	ENST00000313472	human	ensembl	74_37	+1	known	silent	c.315	p.V105	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8H3	HGNC	ENSG00000181761	tier1	-	-	162	0	0.00	61	29	32.22
PAXBP1	0	genome.wustl.edu	37	21	34110493	34110493	+	Frame_Shift_Del	DEL	T	T	-			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	21	34110493	34110493	T	-	DEL	PAXBP1	ENST00000331923	human	ensembl	74_37	-1	known	frame_shift_del	c.2472	p.A825fs	1.000	NULL	pfam_GCFC_dom	-	no_errors	PAXBP1	HGNC	ENSG00000159086	tier1			34	0	0.00	18	2	10.00
PCDH15	0	genome.wustl.edu	37	10	55849756	55849756	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	10	55849756	55849756	T	C	SNP	PCDH15	ENST00000320301	human	ensembl	74_37	-1	known	missense	c.1985	p.N662S	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275	tier1	-	-	39	0	0.00	16	18	52.94
PCDHB3	0	genome.wustl.edu	37	5	140482555	140482555	+	Silent	SNP	C	C	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	5	140482555	140482555	C	T	SNP	PCDHB3	ENST00000231130	human	ensembl	74_37	+1	known	silent	c.2322	p.F774	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB3	HGNC	ENSG00000113205	tier1	-	-	77	0	0.00	20	38	65.52
PCMTD1	0	genome.wustl.edu	37	8	52733124	52733124	+	Silent	SNP	A	A	C			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	8	52733124	52733124	A	C	SNP	PCMTD1	ENST00000360540	human	ensembl	74_37	-1	known	silent	c.861	p.T287	0.566	NULL	pfam_PCMT	-	no_errors	PCMTD1	HGNC	ENSG00000168300	tier1	-	-	145	0	0.00	74	8	9.76
PHOSPHO2	0	genome.wustl.edu	37	2	170557861	170557862	+	Frame_Shift_Ins	INS	-	-	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	2	170557861	170557862	-	T	INS	PHOSPHO2	ENST00000359744	human	ensembl	74_37	+1	known	frame_shift_ins	c.380_381	p.N129fs	0.815:0.819	pfam_Pase_PHOSPHO-typ,superfamily_HAD-like_dom,pirsf_Pase_PHOSPHO-typ,tigrfam_PyrdxlP_Pase-rel,tigrfam_HAD-SF_hydro_IB_PSP-like	pfam_Pase_PHOSPHO-typ,superfamily_HAD-like_dom,pirsf_Pase_PHOSPHO-typ,tigrfam_PyrdxlP_Pase-rel,tigrfam_HAD-SF_hydro_IB_PSP-like	-	no_errors	PHOSPHO2	HGNC	ENSG00000144362	tier1			37	0	0.00	14	7	33.33
PI16	0	genome.wustl.edu	37	6	36927007	36927007	+	Silent	SNP	C	C	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	6	36927007	36927007	C	T	SNP	PI16	ENST00000373674	human	ensembl	74_37	+1	known	silent	c.258	p.G86	0.442	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	-	no_errors	PI16	HGNC	ENSG00000164530	tier1	-	-	93	0	0.00	30	34	53.12
PIPSL	0	genome.wustl.edu	37	10	95718405	95718405	+	RNA	SNP	C	C	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	10	95718405	95718405	C	T	SNP	PIPSL	ENST00000480546	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.063	-	-	-	no_errors	PIPSL	HGNC	ENSG00000180764	tier1	-	-	10	0	0.00	4	4	50.00
PKHD1L1	0	genome.wustl.edu	37	8	110376813	110376813	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	8	110376813	110376813	A	G	SNP	PKHD1L1	ENST00000378402	human	ensembl	74_37	+1	known	missense	c.111	p.I37M	0.997	pfam_IPT,superfamily_Ig_E-set,smart_IPT	pfam_IPT,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	tier1	-	-	81	0	0.00	51	18	26.09
PLEKHM1P	0	genome.wustl.edu	37	17	62800958	62800958	+	RNA	SNP	C	C	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	17	62800958	62800958	C	T	SNP	PLEKHM1P	ENST00000578036	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.858	-	-	-	no_errors	PLEKHM1P	HGNC	ENSG00000214176	tier1	-	-	69	0	0.00	33	18	35.29
PLXNA2	0	genome.wustl.edu	37	1	208213028	208213028	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	1	208213028	208213028	C	T	SNP	PLXNA2	ENST00000367033	human	ensembl	74_37	-1	known	missense	c.4438	p.E1480K	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA2	HGNC	ENSG00000076356	tier1	-	-	46	0	0.00	21	9	30.00
PPP4R2	0	genome.wustl.edu	37	3	73096461	73096461	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	3	73096461	73096461	G	T	SNP	PPP4R2	ENST00000356692	human	ensembl	74_37	+1	known	missense	c.241	p.D81Y	1.000	pfam_PPP4R2	pfam_PPP4R2	-	no_errors	PPP4R2	HGNC	ENSG00000163605				49	0	0.00	23	2	8.00
PREX1	0	genome.wustl.edu	37	20	47251277	47251277	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	20	47251277	47251277	T	C	SNP	PREX1	ENST00000371941	human	ensembl	74_37	-1	known	missense	c.4204	p.T1402A	0.995	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX1	HGNC	ENSG00000124126	tier1	-	-	42	0	0.00	20	4	16.67
PSKH2	0	genome.wustl.edu	37	8	87060700	87060700	+	Silent	SNP	C	C	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	8	87060700	87060700	C	T	SNP	PSKH2	ENST00000276616	human	ensembl	74_37	-1	known	silent	c.1149	p.A383	0.006	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PSKH2	HGNC	ENSG00000147613	tier1	-	-	98	0	0.00	52	23	30.67
RAI1	0	genome.wustl.edu	37	17	17701660	17701660	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	17	17701660	17701660	G	A	SNP	RAI1	ENST00000353383	human	ensembl	74_37	+1	known	missense	c.5398	p.D1800N	1.000	NULL	smart_Znf_PHD	-	no_errors	RAI1	HGNC	ENSG00000108557	tier1	-	-	56	0	0.00	24	8	25.00
RANBP6	0	genome.wustl.edu	37	9	6015307	6015307	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	9	6015307	6015307	G	T	SNP	RANBP6	ENST00000259569	human	ensembl	74_37	-1	known	missense	c.301	p.L101M	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	RANBP6	HGNC	ENSG00000137040				53	0	0.00	46	3	6.12
RHOBTB1	0	genome.wustl.edu	37	10	62648194	62648194	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	10	62648194	62648194	A	G	SNP	RHOBTB1	ENST00000337910	human	ensembl	74_37	-1	known	missense	c.1232	p.F411S	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,superfamily_BTB/POZ_fold,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_BTB/POZ-like,pfscan_BTB/POZ-like,prints_Small_GTPase	-	no_errors	RHOBTB1	HGNC	ENSG00000072422	tier1	-	-	27	0	0.00	15	12	44.44
RLF	0	genome.wustl.edu	37	1	40654740	40654740	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	1	40654740	40654740	A	G	SNP	RLF	ENST00000372771	human	ensembl	74_37	+1	known	missense	c.251	p.Y84C	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RLF	HGNC	ENSG00000117000	tier1	-	-	44	0	0.00	25	12	32.43
RNF213	0	genome.wustl.edu	37	17	78360667	78360667	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	17	78360667	78360667	G	T	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	missense	c.14898	p.Q4966H	1.000	NULL	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	tier1	-	-	34	0	0.00	6	14	70.00
SCAPER	0	genome.wustl.edu	37	15	77096904	77096904	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	15	77096904	77096904	T	A	SNP	SCAPER	ENST00000324767	human	ensembl	74_37	-1	known	missense	c.464	p.E155V	1.000	NULL	smart_Znf_U1	-	no_errors	SCAPER	HGNC	ENSG00000140386	tier1	-	-	54	0	0.00	18	5	21.74
SCN11A	0	genome.wustl.edu	37	3	38888583	38888583	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	3	38888583	38888583	C	T	SNP	SCN11A	ENST00000302328	human	ensembl	74_37	-1	known	missense	c.4978	p.A1660T	0.811	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN11A	HGNC	ENSG00000168356	tier1	-	-	60	0	0.00	4	17	80.95
SEPT7P9	0	genome.wustl.edu	37	10	38680984	38680984	+	RNA	SNP	G	G	A			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	10	38680984	38680984	G	A	SNP	SEPT7P9	ENST00000475691	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SEPT7P9	HGNC	ENSG00000120555	tier1	-	-	183	0	0.00	80	25	23.81
SERPINA9	0	genome.wustl.edu	37	14	94942497	94942497	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	14	94942497	94942497	C	A	SNP	SERPINA9	ENST00000337425	human	ensembl	74_37	-1	known	missense	c.13	p.G5C	0.045	NULL	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINA9	HGNC	ENSG00000170054	tier1	-	-	140	0	0.00	93	33	26.19
SI	0	genome.wustl.edu	37	3	164783108	164783108	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	3	164783108	164783108	G	A	SNP	SI	ENST00000264382	human	ensembl	74_37	-1	known	missense	c.748	p.R250C	0.998	superfamily_Gal_mutarotase_SF_dom	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402	tier1	rs200745562	-	45	0	0.00	23	11	32.35
SLC15A2	0	genome.wustl.edu	37	3	121634493	121634493	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	3	121634493	121634493	A	G	SNP	SLC15A2	ENST00000489711	human	ensembl	74_37	+1	known	missense	c.650	p.Y217C	1.000	pfam_POT_fam,superfamily_MFS_dom_general_subst_transpt,tigrfam_Oligopep_transport	pfam_POT_fam,superfamily_MFS_dom_general_subst_transpt,tigrfam_Oligopep_transport	-	no_errors	SLC15A2	HGNC	ENSG00000163406	tier1	-	-	60	0	0.00	39	22	36.07
SLC38A9	0	genome.wustl.edu	37	5	55008260	55008260	+	RNA	SNP	C	C	A			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	5	55008260	55008260	C	A	SNP	SLC38A9	ENST00000504880	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.065	-	-	-	no_errors	SLC38A9	HGNC	ENSG00000177058	tier1	-	-	44	0	0.00	6	19	76.00
SLC7A11	0	genome.wustl.edu	37	4	139103481	139103481	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	4	139103481	139103481	C	A	SNP	SLC7A11	ENST00000280612	human	ensembl	74_37	-1	known	missense	c.1086	p.K362N	1.000	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1,tigrfam_L_AA_transporter	pfam_AA-permease/SLC12A_dom,pfam_AA_transpt_TM,pirsf_AA/rel_permease1,tigrfam_L_AA_transporter	-	no_errors	SLC7A11	HGNC	ENSG00000151012	tier1	-	-	58	0	0.00	10	16	61.54
SMYD4	0	genome.wustl.edu	37	17	1704284	1704284	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	17	1704284	1704284	T	A	SNP	SMYD4	ENST00000305513	human	ensembl	74_37	-1	known	missense	c.404	p.H135L	1.000	NULL	pfam_SET_dom,pfam_Znf_MYND,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD4	HGNC	ENSG00000186532				45	0	0.00	4	4	6.67
SNX7	0	genome.wustl.edu	37	1	99157106	99157106	+	Missense_Mutation	SNP	T	T	G			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	1	99157106	99157106	T	G	SNP	SNX7	ENST00000306121	human	ensembl	74_37	+1	known	missense	c.490	p.F164V	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX7	HGNC	ENSG00000162627	tier1	-	-	51	0	0.00	26	8	23.53
SOWAHB	0	genome.wustl.edu	37	4	77816698	77816698	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	4	77816698	77816698	G	T	SNP	SOWAHB	ENST00000334306	human	ensembl	74_37	-1	known	missense	c.2305	p.Q769K	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	SOWAHB	HGNC	ENSG00000186212	tier1	-	-	111	0	0.00	48	4	7.69
SSBP1	0	genome.wustl.edu	37	7	141450109	141450109	+	Splice_Site	SNP	A	A	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	7	141450109	141450109	A	T	SNP	SSBP1	ENST00000265304	human	ensembl	74_37	+1	known	splice_site	c.404-2	e6-2	1.000	-	-	-	no_errors	SSBP1	HGNC	ENSG00000106028				38	0	0.00	21	4	16.00
SSFA2	0	genome.wustl.edu	37	2	182774683	182774683	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	2	182774683	182774683	A	T	SNP	SSFA2	ENST00000431877	human	ensembl	74_37	+1	known	missense	c.1471	p.T491S	0.538	NULL	NULL	-	no_errors	SSFA2	HGNC	ENSG00000138434				65	0	0.00	35	2	5.26
SSR1	0	genome.wustl.edu	37	6	7269350	7269350	+	RNA	SNP	C	C	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	6	7269350	7269350	C	T	SNP	SSR1	ENST00000475213	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SSR1	HGNC	ENSG00000124783	tier1	-	-	127	0	0.00	53	23	30.26
STAG2	0	genome.wustl.edu	37	X	123210195	123210195	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	X	123210195	123210195	G	T	SNP	STAG2	ENST00000218089	human	ensembl	74_37	+1	known	missense	c.2547	p.E849D	0.998	NULL	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG2	HGNC	ENSG00000101972				55	0	0.00	55	4	6.78
STARD10	0	genome.wustl.edu	37	11	72466800	72466800	+	Splice_Site	SNP	T	T	C			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	11	72466800	72466800	T	C	SNP	STARD10	ENST00000334805	human	ensembl	74_37	-1	known	splice_site	c.578-2	e5-2	0.998	-	-	-	no_errors	STARD10	HGNC	ENSG00000214530	tier1	-	-	41	0	0.00	12	9	42.86
SYMPK	0	genome.wustl.edu	37	19	46333319	46333319	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	19	46333319	46333319	G	T	SNP	SYMPK	ENST00000245934	human	ensembl	74_37	-1	known	missense	c.1742	p.A581E	0.997	superfamily_ARM-type_fold	pfam_DUF3453,pfam_Symplekin_C,superfamily_ARM-type_fold	-	no_errors	SYMPK	HGNC	ENSG00000125755	tier1	-	-	95	0	0.00	51	8	13.56
TADA2A	0	genome.wustl.edu	37	17	35800613	35800613	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	17	35800613	35800613	G	T	SNP	TADA2A	ENST00000225396	human	ensembl	74_37	+1	known	missense	c.292	p.V98L	1.000	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pirsf_Transcriptional_adaptor_2,pfscan_Myb-like_dom	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pirsf_Transcriptional_adaptor_2,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	TADA2A	HGNC	ENSG00000108264	tier1	-	-	65	0	0.00	45	4	8.16
TBC1D29	0	genome.wustl.edu	37	17	28890301	28890301	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	17	28890301	28890301	G	A	SNP	TBC1D29	ENST00000579181	human	ensembl	74_37	+1	known	missense	c.311	p.S104N	0.904	NULL	superfamily_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D29	HGNC	ENSG00000266733				39	0	0.00	36	4	10.00
TMEM201	0	genome.wustl.edu	37	1	9661232	9661232	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	1	9661232	9661232	G	T	SNP	TMEM201	ENST00000340381	human	ensembl	74_37	+1	known	missense	c.676	p.A226S	0.897	pfam_DUF2448	pfam_DUF2448,pfam_Ima1_N	-	no_errors	TMEM201	HGNC	ENSG00000188807				68	0	0.00	71	4	5.33
TMEM64	0	genome.wustl.edu	37	8	91657797	91657797	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	8	91657797	91657797	A	T	SNP	TMEM64	ENST00000458549	human	ensembl	74_37	-1	known	missense	c.337	p.C113S	1.000	NULL	pfam_SNARE_assoc	-	no_errors	TMEM64	HGNC	ENSG00000180694	tier1	-	-	10	0	0.00	1	6	85.71
TP53	0	genome.wustl.edu	37	17	7578403	7578403	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	17	7578403	7578403	C	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.527	p.C176Y	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	42	0	0.00	6	22	78.57
TRRAP	0	genome.wustl.edu	37	7	98548596	98548596	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	7	98548596	98548596	C	A	SNP	TRRAP	ENST00000359863	human	ensembl	74_37	+1	known	missense	c.5411	p.P1804Q	0.998	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367	tier1	-	-	100	0	0.00	79	33	29.46
TUBB2A	0	genome.wustl.edu	37	6	3155143	3155143	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	6	3155143	3155143	C	T	SNP	TUBB2A	ENST00000333628	human	ensembl	74_37	-1	known	missense	c.292	p.G98R	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Alpha_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB2A	HGNC	ENSG00000137267				42	0	0.00	17	2	10.53
UBIAD1	0	genome.wustl.edu	37	1	11333860	11333860	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	1	11333860	11333860	T	A	SNP	UBIAD1	ENST00000376810	human	ensembl	74_37	+1	known	missense	c.272	p.V91D	1.000	pfam_UbiA_prenyltransferase	pfam_UbiA_prenyltransferase	-	no_errors	UBIAD1	HGNC	ENSG00000120942	tier1	-	-	73	0	0.00	24	27	51.92
UCKL1	0	genome.wustl.edu	37	20	62572378	62572378	+	Nonsense_Mutation	SNP	G	G	A			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	20	62572378	62572378	G	A	SNP	UCKL1	ENST00000358711	human	ensembl	74_37	-1	known	nonsense	c.1090	p.R364*	0.046	NULL	pfam_PRK/URK,pfam_CPT,superfamily_P-loop_NTPase,prints_Uridine_kinase,prints_PRK,tigrfam_Uridine_kinase	-	no_errors	UCKL1	HGNC	ENSG00000198276	tier1	-	-	40	0	0.00	19	5	20.83
WNT5B	0	genome.wustl.edu	37	12	1755098	1755098	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	12	1755098	1755098	G	A	SNP	WNT5B	ENST00000310594	human	ensembl	74_37	+1	known	missense	c.760	p.A254T	0.999	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt	-	no_errors	WNT5B	HGNC	ENSG00000111186	tier1	-	-	50	0	0.00	53	23	30.26
ZFR	0	genome.wustl.edu	37	5	32355672	32355672	+	RNA	DEL	T	T	-			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	5	32355672	32355672	T	-	DEL	ZFR	ENST00000510369	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	ZFR	HGNC	ENSG00000056097	tier1			16	0	0.00	24	3	11.11
ZNF221	0	genome.wustl.edu	37	19	44470083	44470083	+	Silent	SNP	C	C	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	19	44470083	44470083	C	T	SNP	ZNF221	ENST00000251269	human	ensembl	74_37	+1	known	silent	c.429	p.S143	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF221	HGNC	ENSG00000159905	tier1	-	-	76	0	0.00	15	10	40.00
ZNF554	0	genome.wustl.edu	37	19	2834252	2834252	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	19	2834252	2834252	G	T	SNP	ZNF554	ENST00000317243	human	ensembl	74_37	+1	known	missense	c.1019	p.S340I	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF554	HGNC	ENSG00000172006				23	0	0.00	15	2	11.76
ZNF709	0	genome.wustl.edu	37	19	12576489	12576489	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	19	12576489	12576489	T	C	SNP	ZNF709	ENST00000397732	human	ensembl	74_37	-1	known	missense	c.247	p.I83V	0.000	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_Znf_C2H2_jaz,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF709	HGNC	ENSG00000242852	tier1	-	-	79	0	0.00	28	30	51.72
ZNF804B	0	genome.wustl.edu	37	7	88963384	88963384	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49O-01A-11D-A247-09	TCGA-LN-A49O-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4a309e69-3970-434f-8504-fbd71533c8f7	d8f34a63-8393-4ded-b6ce-58e16e452144	7	88963384	88963384	C	A	SNP	ZNF804B	ENST00000333190	human	ensembl	74_37	+1	known	missense	c.1088	p.A363E	0.213	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804B	HGNC	ENSG00000182348	tier1	-	-	22	0	0.00	20	6	23.08